Wall clock time and date at job start Tue Mar 31 2020 15:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47156 * 2 1 4 4 H 1.09006 * 109.47198 * 54.99924 * 3 2 1 5 5 C 1.50700 * 109.47103 * 174.99631 * 3 2 1 6 6 H 1.08005 * 120.00129 * 120.00067 * 5 3 2 7 7 C 1.37878 * 120.00175 * 300.00281 * 5 3 2 8 8 N 1.31515 * 119.99755 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00142 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47563 * 89.99824 * 9 7 5 11 11 H 1.48507 * 109.47018 * 209.99699 * 9 7 5 12 12 H 1.48498 * 109.47227 * 329.99469 * 9 7 5 13 13 O 1.45197 * 109.47203 * 294.99643 * 3 2 1 14 14 C 1.34759 * 117.00024 * 89.99977 * 13 3 2 15 15 O 1.21509 * 119.99946 * 0.02562 * 14 13 3 16 16 C 1.47394 * 119.99796 * 179.97438 * 14 13 3 17 17 C 1.39764 * 120.19976 * 0.02562 * 16 14 13 18 18 C 1.37769 * 119.90327 * 179.97438 * 17 16 14 19 19 C 1.38577 * 120.31297 * 0.02562 * 18 17 16 20 20 C 1.38048 * 120.40437 * 359.97438 * 19 18 17 21 21 C 1.38733 * 120.08701 * 359.72420 * 20 19 18 22 22 O 1.35620 * 120.15537 * 180.27938 * 21 20 19 23 23 C 1.35899 * 117.99820 * 267.24019 * 22 21 20 24 24 C 1.39171 * 120.47775 * 185.40697 * 23 22 21 25 25 C 1.38532 * 118.37044 * 179.78382 * 24 23 22 26 26 C 1.38261 * 119.22334 * 0.47224 * 25 24 23 27 27 N 1.31852 * 120.88911 * 359.77128 * 26 25 24 28 28 C 1.31834 * 121.78760 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46788 * 60.00454 * 1 2 3 31 31 H 1.08995 * 109.47672 * 300.00318 * 1 2 3 32 32 H 1.09007 * 109.46585 * 119.99994 * 2 1 3 33 33 H 1.09003 * 109.47122 * 239.99451 * 2 1 3 34 34 H 0.96999 * 119.99923 * 180.02562 * 8 7 5 35 35 H 1.07996 * 120.05111 * 359.97438 * 17 16 14 36 36 H 1.07994 * 119.84501 * 179.97438 * 18 17 16 37 37 H 1.08000 * 119.79927 * 179.97438 * 19 18 17 38 38 H 1.07998 * 119.95272 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.80692 * 0.02562 * 24 23 22 40 40 H 1.07991 * 120.38394 * 180.22024 * 25 24 23 41 41 H 1.08002 * 119.55440 * 179.79093 * 26 25 24 42 42 H 1.08000 * 119.65739 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3373 2.1734 9 14 6.0049 0.8811 1.3820 10 1 6.4416 2.1140 2.0852 11 1 6.4394 -0.3100 2.1552 12 1 6.6136 0.8414 0.0281 13 8 1.6560 2.0916 -1.2407 14 6 0.4682 2.7278 -1.2561 15 8 -0.2274 2.7402 -0.2599 16 6 0.0132 3.4097 -2.4811 17 6 0.8102 3.3985 -3.6292 18 6 0.3788 4.0373 -4.7710 19 6 -0.8424 4.6922 -4.7871 20 6 -1.6398 4.7113 -3.6604 21 6 -1.2246 4.0681 -2.5035 22 8 -2.0094 4.0813 -1.3975 23 6 -1.8040 5.0635 -0.4811 24 6 -2.5013 5.0621 0.7234 25 6 -2.2546 6.0819 1.6280 26 6 -1.3384 7.0652 1.3033 27 7 -0.6981 7.0399 0.1510 28 6 -0.9002 6.0848 -0.7350 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 3.8291 -0.0605 2.9503 35 1 1.7628 2.8898 -3.6213 36 1 0.9955 4.0284 -5.6575 37 1 -1.1723 5.1906 -5.6867 38 1 -2.5904 5.2235 -3.6812 39 1 -3.2144 4.2830 0.9488 40 1 -2.7748 6.1107 2.5739 41 1 -1.1444 7.8646 2.0032 42 1 -0.3570 6.0981 -1.6684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787088524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:43 Heat of formation + Delta-G solvation = -67.917503 kcal Electronic energy + Delta-G solvation = -28046.933353 eV Core-core repulsion = 24150.320753 eV Total energy + Delta-G solvation = -3896.612600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.42747 -41.20512 -40.19494 -38.67762 -37.53552 -35.53699 -33.49186 -33.48013 -32.43584 -31.90474 -30.78034 -29.35654 -26.05642 -25.12644 -24.75684 -24.57544 -23.33886 -22.38018 -21.43602 -19.89807 -19.12537 -18.56895 -18.32001 -17.70277 -17.60889 -17.25290 -16.93075 -16.59648 -16.17330 -15.56971 -15.29104 -15.26872 -15.02362 -14.82881 -14.72790 -14.18736 -14.06752 -13.74097 -13.55459 -13.39021 -13.35187 -13.31405 -13.13549 -12.86460 -12.82395 -12.60241 -12.33715 -12.15798 -11.80697 -11.49806 -11.28015 -10.85864 -10.77169 -10.66489 -10.57202 -10.19969 -9.90240 -9.57169 -8.30695 -6.47905 -0.51782 0.03971 0.06628 0.24878 1.38791 1.40861 1.52172 1.60465 1.89330 2.02199 2.38562 2.67834 2.76209 2.98970 3.44383 3.61302 3.66958 3.78974 3.90006 4.00108 4.01745 4.14456 4.27132 4.28876 4.32584 4.33572 4.47932 4.53258 4.61617 4.76553 4.83803 4.93103 5.00792 5.05919 5.12429 5.15990 5.19105 5.28725 5.34889 5.47038 5.51420 5.61485 5.69747 5.91616 6.06407 6.33860 6.56405 6.87149 6.92852 7.23466 8.76385 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.004391 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.265581 B = 6374.639765 C = 7413.477660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.127 4.127 3 C 0.230 3.770 4 H 0.001 0.999 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.274 1.274 11 H -0.273 1.273 12 H -0.261 1.261 13 O -0.359 6.359 14 C 0.483 3.517 15 O -0.523 6.523 16 C -0.159 4.159 17 C -0.061 4.061 18 C -0.114 4.114 19 C -0.055 4.055 20 C -0.135 4.135 21 C 0.112 3.888 22 O -0.256 6.256 23 C 0.085 3.915 24 C -0.114 4.114 25 C -0.123 4.123 26 C 0.049 3.951 27 N -0.476 5.476 28 C 0.009 3.991 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.271 0.729 35 H 0.140 0.860 36 H 0.176 0.824 37 H 0.186 0.814 38 H 0.162 0.838 39 H 0.151 0.849 40 H 0.181 0.819 41 H 0.190 0.810 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.385 10.891 -11.961 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.165 4.165 3 C 0.177 3.823 4 H 0.019 0.981 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.199 1.199 11 H -0.198 1.198 12 H -0.185 1.185 13 O -0.275 6.275 14 C 0.328 3.672 15 O -0.414 6.414 16 C -0.161 4.161 17 C -0.079 4.079 18 C -0.131 4.131 19 C -0.072 4.072 20 C -0.153 4.153 21 C 0.069 3.931 22 O -0.166 6.166 23 C 0.040 3.960 24 C -0.140 4.140 25 C -0.142 4.142 26 C -0.108 4.108 27 N -0.186 5.186 28 C -0.148 4.148 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.158 0.842 36 H 0.194 0.806 37 H 0.203 0.797 38 H 0.179 0.821 39 H 0.169 0.831 40 H 0.198 0.802 41 H 0.207 0.793 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.095 11.253 -11.650 19.633 hybrid contribution 0.367 -1.173 1.010 1.591 sum -10.727 10.080 -10.639 18.163 Atomic orbital electron populations 1.21671 0.96440 1.00433 0.99771 1.21856 0.94248 0.98051 1.02381 1.20341 0.94573 0.89123 0.78246 0.98130 1.21306 0.90302 1.40104 1.07059 0.91638 1.25806 1.04314 0.93759 0.94260 1.70015 1.37497 1.37865 1.09808 0.85217 0.77580 0.78035 0.78814 1.19931 1.19804 1.18537 1.86501 1.35167 1.63201 1.42674 1.21563 0.80150 0.76863 0.88603 1.90781 1.55486 1.58828 1.36289 1.19820 0.96770 1.05593 0.93920 1.21675 0.98797 0.96205 0.91226 1.21717 0.97321 0.96014 0.98070 1.21843 0.92281 0.94957 0.98156 1.21654 1.02634 0.99325 0.91677 1.19028 0.88690 0.97921 0.87445 1.84225 1.54906 1.48293 1.29211 1.20265 0.96969 0.87953 0.90837 1.21279 1.01294 1.00722 0.90745 1.22428 0.98257 0.92972 1.00578 1.23284 0.93799 0.99889 0.93851 1.67495 1.23265 1.24309 1.03504 1.22834 0.99047 0.92399 1.00541 0.91949 0.95046 0.94728 0.89393 0.93503 0.91986 0.84188 0.80627 0.79686 0.82063 0.83101 0.80183 0.79329 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 8.56 71.98 0.62 -5.25 16 2 C -0.13 -6.67 5.49 30.59 0.17 -6.50 16 3 C 0.23 13.06 2.25 29.85 0.07 13.13 16 4 H 0.00 0.06 7.16 -2.38 -0.02 0.04 16 5 C -0.55 -32.03 8.90 25.60 0.23 -31.80 16 6 H 0.07 3.74 7.81 -2.91 -0.02 3.71 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -53.28 11.29 21.45 0.24 -53.04 16 9 Si 0.98 43.57 29.54 68.60 2.03 45.60 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 13 O -0.36 -18.21 9.06 -56.70 -0.51 -18.72 16 14 C 0.48 22.29 6.34 70.23 0.45 22.74 16 15 O -0.52 -26.42 11.37 26.81 0.30 -26.12 16 16 C -0.16 -5.62 5.88 -20.02 -0.12 -5.74 16 17 C -0.06 -1.65 9.61 22.53 0.22 -1.43 16 18 C -0.11 -1.90 10.02 22.24 0.22 -1.67 16 19 C -0.05 -0.76 10.03 22.31 0.22 -0.53 16 20 C -0.13 -2.71 9.81 22.34 0.22 -2.49 16 21 C 0.11 3.44 4.02 22.87 0.09 3.53 16 22 O -0.26 -8.95 8.59 -11.83 -0.10 -9.06 16 23 C 0.08 2.88 5.41 22.61 0.12 3.00 16 24 C -0.11 -3.39 10.13 22.56 0.23 -3.16 16 25 C -0.12 -2.97 10.11 22.35 0.23 -2.74 16 26 C 0.05 1.29 11.18 84.70 0.95 2.24 16 27 N -0.48 -15.58 10.35 -195.42 -2.02 -17.60 16 28 C 0.01 0.30 10.37 84.81 0.88 1.18 16 29 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.03 1.44 6.06 -2.39 -0.01 1.42 16 31 H 0.03 1.70 7.79 -2.39 -0.02 1.68 16 32 H 0.09 4.98 5.95 -2.38 -0.01 4.97 16 33 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.14 3.96 7.61 -2.91 -0.02 3.94 16 36 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.19 0.84 8.06 -2.91 -0.02 0.81 16 38 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.18 2.78 8.06 -2.92 -0.02 2.76 16 41 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 42 H 0.15 4.83 6.71 -2.91 -0.02 4.81 16 Total: -1.00 -77.39 356.96 6.21 -71.18 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 1.04 Total: 21.80 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 5.23 Total: -14.04 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.78 Total: -70.64 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.31 Total: -53.89 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -77.39 6.21 -71.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.260 kcal (2) G-P(sol) polarization free energy of solvation -77.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds