Wall clock time and date at job start Tue Mar 31 2020 15:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46796 * 2 1 4 4 H 1.09003 * 109.46936 * 305.00125 * 3 2 1 5 5 C 1.50698 * 109.46725 * 185.00316 * 3 2 1 6 6 H 1.08001 * 120.00187 * 239.99839 * 5 3 2 7 7 C 1.37880 * 120.00096 * 60.00656 * 5 3 2 8 8 N 1.31513 * 119.99991 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99888 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47099 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47035 * 119.99800 * 9 7 5 12 12 H 1.48495 * 109.46906 * 239.99350 * 9 7 5 13 13 O 1.45198 * 109.46956 * 65.00262 * 3 2 1 14 14 C 1.34664 * 116.99974 * 269.99749 * 13 3 2 15 15 O 1.21423 * 120.00139 * 0.02562 * 14 13 3 16 16 C 1.48068 * 119.99849 * 179.97438 * 14 13 3 17 17 C 1.40010 * 120.89678 * 359.97438 * 16 14 13 18 18 C 1.37987 * 119.13168 * 180.02562 * 17 16 14 19 19 N 1.31890 * 120.98087 * 359.74507 * 18 17 16 20 20 C 1.32187 * 121.98635 * 0.52817 * 19 18 17 21 21 O 1.35682 * 119.62682 * 179.75337 * 20 19 18 22 22 C 1.35897 * 117.99683 * 5.54533 * 21 20 19 23 23 C 1.38755 * 120.05306 * 70.00182 * 22 21 20 24 24 C 1.38135 * 119.93997 * 179.97438 * 23 22 21 25 25 C 1.38274 * 120.05888 * 359.97438 * 24 23 22 26 26 C 1.38277 * 120.11266 * 0.26035 * 25 24 23 27 27 C 1.38133 * 120.05842 * 359.48389 * 26 25 24 28 28 C 1.38912 * 120.75291 * 359.46775 * 20 19 18 29 29 H 1.09003 * 109.47079 * 299.99625 * 1 2 3 30 30 H 1.08991 * 109.47541 * 59.99484 * 1 2 3 31 31 H 1.09001 * 109.46761 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47079 * 240.00375 * 2 1 3 33 33 H 1.08995 * 109.47352 * 120.00041 * 2 1 3 34 34 H 0.96997 * 119.99672 * 180.02562 * 8 7 5 35 35 H 1.08005 * 120.43083 * 0.03746 * 17 16 14 36 36 H 1.07999 * 119.50501 * 180.02562 * 18 17 16 37 37 H 1.07999 * 120.03244 * 359.95247 * 23 22 21 38 38 H 1.07992 * 119.97458 * 180.02562 * 24 23 22 39 39 H 1.07999 * 119.94680 * 179.97438 * 25 24 23 40 40 H 1.07996 * 119.97015 * 179.72012 * 26 25 24 41 41 H 1.08002 * 120.03242 * 180.25720 * 27 26 25 42 42 H 1.07995 * 120.53088 * 180.27616 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1431 0.8786 -1.2282 8 7 3.4060 0.3369 -2.1731 9 14 6.0048 0.8815 -1.3820 10 1 6.5986 1.5474 -0.1950 11 1 6.4969 -0.5172 -1.4634 12 1 6.3988 1.6170 -2.6104 13 8 1.6558 2.0917 1.2407 14 6 0.4688 2.7275 1.2561 15 8 -0.2266 2.7391 0.2608 16 6 0.0112 3.4114 2.4870 17 6 0.7972 3.4084 3.6457 18 6 0.3350 4.0569 4.7726 19 7 -0.8279 4.6791 4.7689 20 6 -1.6055 4.7037 3.7003 21 8 -2.7951 5.3541 3.7512 22 6 -3.0900 6.0575 4.8760 23 6 -2.3979 7.2243 5.1673 24 6 -2.6999 7.9377 6.3110 25 6 -3.6911 7.4903 7.1649 26 6 -4.3789 6.3252 6.8793 27 6 -4.0845 5.6109 5.7343 28 6 -1.2160 4.0762 2.5238 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8291 -0.0614 -2.9497 35 1 1.7528 2.9053 3.6571 36 1 0.9366 4.0588 5.6695 37 1 -1.6236 7.5743 4.5007 38 1 -2.1619 8.8461 6.5381 39 1 -3.9254 8.0492 8.0588 40 1 -5.1496 5.9755 7.5502 41 1 -4.6249 4.7032 5.5095 42 1 -1.8521 4.1023 1.6514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787092018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:30 Heat of formation + Delta-G solvation = -52.684983 kcal Electronic energy + Delta-G solvation = -26461.642537 eV Core-core repulsion = 22565.690468 eV Total energy + Delta-G solvation = -3895.952069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27113 -39.98354 -39.09402 -37.65171 -35.94057 -33.64621 -32.68089 -31.45996 -31.32058 -31.18636 -29.69688 -27.45370 -25.32934 -23.85859 -23.23392 -22.93482 -22.65008 -21.00507 -19.83437 -18.80459 -17.88705 -16.88696 -16.71734 -16.35828 -16.23791 -16.01607 -15.46156 -15.23533 -15.17922 -14.63557 -14.33358 -14.21067 -14.03896 -13.73026 -13.14188 -12.91412 -12.89375 -12.51772 -12.25311 -12.01941 -11.92182 -11.56118 -11.41842 -11.25876 -11.16280 -11.02580 -10.71989 -10.34873 -10.17515 -9.98895 -9.83382 -9.69539 -9.46952 -9.25162 -9.10471 -8.88694 -8.62737 -8.52206 -6.24497 -4.31965 0.61941 0.82062 1.04756 1.08875 2.66386 2.97431 3.19998 3.26296 3.30258 3.41730 3.65049 3.78696 4.11035 4.27350 4.61839 4.62410 4.72746 4.81737 4.91838 4.99535 5.07763 5.08984 5.20918 5.24460 5.50145 5.60673 5.68769 5.79893 6.04164 6.11296 6.13338 6.17446 6.18922 6.21322 6.24782 6.39281 6.55243 6.78298 6.88334 7.09046 7.12773 7.23674 7.53920 7.65527 7.65733 7.83082 8.07053 8.46780 8.78624 9.33375 10.82341 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.002369 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.032523 B =11817.348723 C =12351.372729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.344 6.344 14 C 0.496 3.504 15 O -0.499 6.499 16 C -0.031 4.031 17 C -0.149 4.149 18 C 0.128 3.872 19 N -0.513 5.513 20 C 0.304 3.696 21 O -0.248 6.248 22 C 0.100 3.900 23 C -0.117 4.117 24 C -0.106 4.106 25 C -0.122 4.122 26 C -0.108 4.108 27 C -0.118 4.118 28 C -0.126 4.126 29 H 0.030 0.970 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.111 0.889 33 H 0.043 0.957 34 H 0.267 0.733 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 10.592 17.240 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.260 6.260 14 C 0.339 3.661 15 O -0.389 6.389 16 C -0.040 4.040 17 C -0.169 4.169 18 C -0.027 4.027 19 N -0.236 5.236 20 C 0.128 3.872 21 O -0.154 6.154 22 C 0.058 3.942 23 C -0.135 4.135 24 C -0.124 4.124 25 C -0.140 4.140 26 C -0.126 4.126 27 C -0.136 4.136 28 C -0.147 4.147 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.129 0.871 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.013 10.890 17.258 23.680 hybrid contribution 1.192 -0.499 -0.921 1.587 sum -10.821 10.391 16.337 22.181 Atomic orbital electron populations 1.21874 0.98347 0.99207 1.00723 1.22038 0.92651 0.99167 1.03554 1.20803 0.95236 0.88818 0.78195 0.93284 1.21049 0.89411 1.39153 1.06375 0.91161 1.24890 0.99334 0.94693 0.95023 1.69892 1.35376 1.37677 1.09476 0.86215 0.83732 0.77920 0.78263 1.19449 1.20677 1.20734 1.86522 1.32918 1.62044 1.44533 1.20683 0.81525 0.77258 0.86651 1.90797 1.55377 1.57946 1.34753 1.19579 0.93879 0.96929 0.93615 1.22503 1.01911 1.00090 0.92376 1.22441 0.90464 0.91716 0.98085 1.67175 1.07056 1.21145 1.28230 1.19592 0.85753 0.92006 0.89889 1.84610 1.32668 1.61275 1.36842 1.18558 0.97067 0.91407 0.87134 1.21333 0.99630 0.94746 0.97826 1.21008 0.97658 0.99836 0.93943 1.21212 0.96340 0.96695 0.99758 1.21001 0.99973 0.95228 0.96369 1.21144 0.98975 1.00447 0.93062 1.21092 0.96832 0.98953 0.97822 0.95067 0.92714 0.94634 0.87148 0.93817 0.92344 0.82403 0.81473 0.85713 0.85507 0.85699 0.85356 0.85267 0.82576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.56 37.16 0.32 -2.78 16 2 C -0.14 -3.29 5.49 -26.73 -0.15 -3.43 16 3 C 0.22 5.69 2.25 -27.88 -0.06 5.63 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.11 8.90 -34.44 -0.31 -14.42 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.45 11.29 55.43 0.63 -23.83 16 9 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 O -0.34 -7.80 9.16 -40.39 -0.37 -8.17 16 14 C 0.50 10.17 6.38 34.76 0.22 10.39 16 15 O -0.50 -11.29 13.62 -19.21 -0.26 -11.55 16 16 C -0.03 -0.51 5.91 -104.69 -0.62 -1.13 16 17 C -0.15 -2.02 9.70 -39.01 -0.38 -2.39 16 18 C 0.13 1.51 11.17 -17.62 -0.20 1.31 16 19 N -0.51 -6.88 8.97 -13.37 -0.12 -7.00 16 20 C 0.30 4.33 7.32 -17.15 -0.13 4.21 16 21 O -0.25 -3.40 9.97 -2.93 -0.03 -3.43 16 22 C 0.10 1.21 5.26 -39.20 -0.21 1.01 16 23 C -0.12 -1.26 9.39 -39.43 -0.37 -1.63 16 24 C -0.11 -0.91 10.04 -39.61 -0.40 -1.31 16 25 C -0.12 -0.94 10.04 -39.55 -0.40 -1.34 16 26 C -0.11 -0.88 10.04 -39.61 -0.40 -1.28 16 27 C -0.12 -1.21 9.99 -39.43 -0.39 -1.60 16 28 C -0.13 -1.91 9.62 -38.82 -0.37 -2.28 16 29 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16 30 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 33 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.16 2.02 7.71 -52.48 -0.40 1.61 16 36 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.16 2.33 7.74 -52.49 -0.41 1.92 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -30.29 362.37 -8.78 -39.07 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.14 Total: 3.40 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -3.92 Total: -9.47 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.51 Total: -30.82 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.66 Total: -23.15 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.29 -8.78 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787092018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.617 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds