Wall clock time and date at job start Tue Mar 31 2020 15:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46796 * 2 1 4 4 H 1.09003 * 109.46936 * 305.00125 * 3 2 1 5 5 C 1.50698 * 109.46725 * 185.00316 * 3 2 1 6 6 H 1.08001 * 120.00187 * 239.99839 * 5 3 2 7 7 C 1.37880 * 120.00096 * 60.00656 * 5 3 2 8 8 N 1.31513 * 119.99991 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99888 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47099 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47035 * 119.99800 * 9 7 5 12 12 H 1.48495 * 109.46906 * 239.99350 * 9 7 5 13 13 O 1.45198 * 109.46956 * 65.00262 * 3 2 1 14 14 C 1.34664 * 116.99974 * 269.99749 * 13 3 2 15 15 O 1.21423 * 120.00139 * 0.02562 * 14 13 3 16 16 C 1.48068 * 119.99849 * 179.97438 * 14 13 3 17 17 C 1.40010 * 120.89678 * 359.97438 * 16 14 13 18 18 C 1.37987 * 119.13168 * 180.02562 * 17 16 14 19 19 N 1.31890 * 120.98087 * 359.74507 * 18 17 16 20 20 C 1.32187 * 121.98635 * 0.52817 * 19 18 17 21 21 O 1.35682 * 119.62682 * 179.75337 * 20 19 18 22 22 C 1.35897 * 117.99683 * 5.54533 * 21 20 19 23 23 C 1.38755 * 120.05306 * 70.00182 * 22 21 20 24 24 C 1.38135 * 119.93997 * 179.97438 * 23 22 21 25 25 C 1.38274 * 120.05888 * 359.97438 * 24 23 22 26 26 C 1.38277 * 120.11266 * 0.26035 * 25 24 23 27 27 C 1.38133 * 120.05842 * 359.48389 * 26 25 24 28 28 C 1.38912 * 120.75291 * 359.46775 * 20 19 18 29 29 H 1.09003 * 109.47079 * 299.99625 * 1 2 3 30 30 H 1.08991 * 109.47541 * 59.99484 * 1 2 3 31 31 H 1.09001 * 109.46761 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47079 * 240.00375 * 2 1 3 33 33 H 1.08995 * 109.47352 * 120.00041 * 2 1 3 34 34 H 0.96997 * 119.99672 * 180.02562 * 8 7 5 35 35 H 1.08005 * 120.43083 * 0.03746 * 17 16 14 36 36 H 1.07999 * 119.50501 * 180.02562 * 18 17 16 37 37 H 1.07999 * 120.03244 * 359.95247 * 23 22 21 38 38 H 1.07992 * 119.97458 * 180.02562 * 24 23 22 39 39 H 1.07999 * 119.94680 * 179.97438 * 25 24 23 40 40 H 1.07996 * 119.97015 * 179.72012 * 26 25 24 41 41 H 1.08002 * 120.03242 * 180.25720 * 27 26 25 42 42 H 1.07995 * 120.53088 * 180.27616 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1431 0.8786 -1.2282 8 7 3.4060 0.3369 -2.1731 9 14 6.0048 0.8815 -1.3820 10 1 6.5986 1.5474 -0.1950 11 1 6.4969 -0.5172 -1.4634 12 1 6.3988 1.6170 -2.6104 13 8 1.6558 2.0917 1.2407 14 6 0.4688 2.7275 1.2561 15 8 -0.2266 2.7391 0.2608 16 6 0.0112 3.4114 2.4870 17 6 0.7972 3.4084 3.6457 18 6 0.3350 4.0569 4.7726 19 7 -0.8279 4.6791 4.7689 20 6 -1.6055 4.7037 3.7003 21 8 -2.7951 5.3541 3.7512 22 6 -3.0900 6.0575 4.8760 23 6 -2.3979 7.2243 5.1673 24 6 -2.6999 7.9377 6.3110 25 6 -3.6911 7.4903 7.1649 26 6 -4.3789 6.3252 6.8793 27 6 -4.0845 5.6109 5.7343 28 6 -1.2160 4.0762 2.5238 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8291 -0.0614 -2.9497 35 1 1.7528 2.9053 3.6571 36 1 0.9366 4.0588 5.6695 37 1 -1.6236 7.5743 4.5007 38 1 -2.1619 8.8461 6.5381 39 1 -3.9254 8.0492 8.0588 40 1 -5.1496 5.9755 7.5502 41 1 -4.6249 4.7032 5.5095 42 1 -1.8521 4.1023 1.6514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787092018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:29 Heat of formation + Delta-G solvation = -68.776506 kcal Electronic energy + Delta-G solvation = -26462.340318 eV Core-core repulsion = 22565.690468 eV Total energy + Delta-G solvation = -3896.649850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.33262 -41.44256 -40.21866 -38.53653 -37.73717 -35.57260 -33.98670 -33.27381 -32.30906 -31.92521 -30.54954 -29.41082 -26.70668 -25.21719 -24.72119 -23.77027 -23.65037 -22.40545 -21.51724 -20.10281 -19.07896 -18.73257 -17.95420 -17.37772 -17.36047 -17.22767 -17.06296 -16.78980 -16.32819 -16.06224 -15.38624 -15.22905 -14.91111 -14.88010 -14.75168 -14.39497 -14.15164 -13.66218 -13.53128 -13.35447 -13.28986 -13.14719 -13.05639 -12.85253 -12.58609 -12.56099 -12.13963 -11.89582 -11.84594 -11.71091 -11.43453 -11.21011 -10.92224 -10.85507 -10.54939 -9.97689 -9.94171 -9.54673 -8.28284 -6.44965 -0.63147 -0.10940 0.14407 0.39774 1.41638 1.43127 1.48913 1.52532 1.60549 2.05231 2.39891 2.59546 2.87405 3.01982 3.13567 3.52460 3.74864 3.79059 3.94395 3.95127 4.05184 4.23692 4.34651 4.36353 4.45494 4.46957 4.48569 4.55673 4.61811 4.71347 4.79967 4.96204 5.04097 5.06036 5.17265 5.22438 5.30701 5.39757 5.42781 5.49833 5.53220 5.63837 5.83427 5.89478 6.05301 6.30227 6.56989 6.61527 6.82926 7.25588 8.78826 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.002369 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.032523 B =11817.348723 C =12351.372729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.262 1.262 11 H -0.272 1.272 12 H -0.278 1.278 13 O -0.346 6.346 14 C 0.495 3.505 15 O -0.529 6.529 16 C -0.048 4.048 17 C -0.143 4.143 18 C 0.147 3.853 19 N -0.511 5.511 20 C 0.305 3.695 21 O -0.259 6.259 22 C 0.067 3.933 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.115 4.115 26 C -0.105 4.105 27 C -0.131 4.131 28 C -0.136 4.136 29 H 0.033 0.967 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.271 0.729 35 H 0.168 0.832 36 H 0.213 0.787 37 H 0.117 0.883 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.131 0.869 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.018 11.429 20.524 25.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.027 0.973 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.805 3.195 10 H -0.186 1.186 11 H -0.197 1.197 12 H -0.204 1.204 13 O -0.262 6.262 14 C 0.339 3.661 15 O -0.420 6.420 16 C -0.057 4.057 17 C -0.163 4.163 18 C -0.009 4.009 19 N -0.234 5.234 20 C 0.129 3.871 21 O -0.165 6.165 22 C 0.025 3.975 23 C -0.151 4.151 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.123 4.123 27 C -0.149 4.149 28 C -0.156 4.156 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.186 0.814 36 H 0.230 0.770 37 H 0.135 0.865 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.174 0.826 41 H 0.149 0.851 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.664 11.742 20.556 26.390 hybrid contribution 0.966 -0.653 -1.826 2.167 sum -10.698 11.088 18.729 24.253 Atomic orbital electron populations 1.21734 0.96500 1.00724 0.99974 1.21885 0.94248 0.97951 1.02677 1.20513 0.94845 0.89319 0.78138 0.97326 1.21331 0.90133 1.39951 1.06996 0.91179 1.25803 1.04210 0.93901 0.94378 1.70016 1.37398 1.37903 1.09905 0.85152 0.77703 0.78281 0.78388 1.18561 1.19744 1.20408 1.86494 1.34277 1.62537 1.42897 1.21373 0.80373 0.76493 0.87823 1.90776 1.55871 1.58990 1.36323 1.19321 0.95165 0.98419 0.92780 1.22669 1.01820 1.00004 0.91830 1.23119 0.89807 0.89368 0.98636 1.67325 1.07420 1.21031 1.27661 1.19592 0.86220 0.91720 0.89604 1.84599 1.32311 1.61378 1.38222 1.18908 0.98734 0.92244 0.87609 1.21410 0.99886 0.94930 0.98833 1.21337 0.97892 1.00273 0.93015 1.21641 0.95067 0.96315 1.00293 1.21378 1.00241 0.95010 0.95691 1.21340 0.98782 1.01121 0.93691 1.20988 0.96620 0.99729 0.98308 0.94763 0.94489 0.91857 0.89315 0.93153 0.92019 0.81447 0.77042 0.86488 0.83187 0.82466 0.82574 0.85062 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.56 71.98 0.62 -5.18 16 2 C -0.13 -6.42 5.49 30.60 0.17 -6.26 16 3 C 0.22 12.01 2.25 29.85 0.07 12.08 16 4 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 5 C -0.55 -30.20 8.90 25.60 0.23 -29.97 16 6 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.91 -51.57 11.29 21.45 0.24 -51.33 16 9 Si 0.98 42.05 29.54 68.60 2.03 44.08 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 13 O -0.35 -16.17 9.16 -55.73 -0.51 -16.68 16 14 C 0.49 21.11 6.38 70.43 0.45 21.56 16 15 O -0.53 -25.33 13.62 20.08 0.27 -25.05 16 16 C -0.05 -1.60 5.91 -19.91 -0.12 -1.72 16 17 C -0.14 -3.71 9.70 22.64 0.22 -3.49 16 18 C 0.15 3.08 11.17 84.62 0.94 4.02 16 19 N -0.51 -12.96 8.97 -309.12 -2.77 -15.74 16 20 C 0.30 8.72 7.32 84.80 0.62 9.34 16 21 O -0.26 -7.29 9.97 -33.41 -0.33 -7.62 16 22 C 0.07 1.59 5.26 22.52 0.12 1.70 16 23 C -0.13 -2.74 9.39 22.37 0.21 -2.53 16 24 C -0.11 -1.58 10.04 22.25 0.22 -1.35 16 25 C -0.12 -1.38 10.04 22.29 0.22 -1.16 16 26 C -0.11 -1.43 10.04 22.25 0.22 -1.21 16 27 C -0.13 -2.54 9.99 22.37 0.22 -2.32 16 28 C -0.14 -4.26 9.62 22.76 0.22 -4.04 16 29 H 0.03 1.45 6.06 -2.39 -0.01 1.43 16 30 H 0.04 1.72 7.79 -2.39 -0.02 1.70 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.09 4.81 5.95 -2.39 -0.01 4.79 16 33 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.17 4.02 7.71 -2.91 -0.02 3.99 16 36 H 0.21 2.53 8.06 -2.91 -0.02 2.50 16 37 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 40 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.15 4.76 7.74 -2.91 -0.02 4.74 16 Total: -1.00 -68.29 362.37 5.05 -63.24 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.04 Total: 18.25 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 5.09 Total: -9.15 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -2.53 Total: -67.07 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.57 Total: -49.35 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -68.29 5.05 -63.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787092018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.540 kcal (2) G-P(sol) polarization free energy of solvation -68.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds