Wall clock time and date at job start Tue Mar 31 2020 15:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47380 * 2 1 4 4 H 1.09007 * 109.46762 * 304.99552 * 3 2 1 5 5 C 1.50701 * 109.47153 * 185.00285 * 3 2 1 6 6 H 1.08001 * 119.99627 * 239.99976 * 5 3 2 7 7 C 1.37874 * 120.00123 * 59.99535 * 5 3 2 8 8 N 1.31511 * 120.00161 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99882 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46937 * 90.00108 * 9 7 5 11 11 H 1.48499 * 109.47198 * 209.99896 * 9 7 5 12 12 H 1.48503 * 109.47230 * 330.00199 * 9 7 5 13 13 O 1.45195 * 109.47052 * 64.99673 * 3 2 1 14 14 C 1.34738 * 117.00313 * 269.99971 * 13 3 2 15 15 O 1.21506 * 119.99995 * 0.02562 * 14 13 3 16 16 C 1.47482 * 120.00253 * 180.02562 * 14 13 3 17 17 C 1.40323 * 120.49826 * 180.02562 * 16 14 13 18 18 C 1.36946 * 118.46542 * 179.70782 * 17 16 14 19 19 C 1.39176 * 119.40002 * 0.53418 * 18 17 16 20 20 O 1.35486 * 119.51626 * 179.72690 * 19 18 17 21 21 C 1.35890 * 117.99693 * 185.75974 * 20 19 18 22 22 C 1.38752 * 120.05761 * 250.69823 * 21 20 19 23 23 C 1.38132 * 119.94483 * 179.72265 * 22 21 20 24 24 C 1.38270 * 120.05797 * 0.55897 * 23 22 21 25 25 C 1.38275 * 120.11092 * 359.71454 * 24 23 22 26 26 C 1.38136 * 120.05851 * 0.02562 * 25 24 23 27 27 N 1.32460 * 120.96875 * 359.45483 * 19 18 17 28 28 C 1.31682 * 121.66273 * 0.27157 * 27 19 18 29 29 H 1.09008 * 109.46883 * 300.00460 * 1 2 3 30 30 H 1.09005 * 109.47078 * 59.99766 * 1 2 3 31 31 H 1.09000 * 109.47279 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47498 * 239.99863 * 2 1 3 33 33 H 1.09000 * 109.47343 * 119.99870 * 2 1 3 34 34 H 0.97007 * 120.00187 * 180.02562 * 8 7 5 35 35 H 1.08001 * 120.76431 * 359.97438 * 17 16 14 36 36 H 1.08004 * 120.30227 * 180.26198 * 18 17 16 37 37 H 1.08009 * 120.02569 * 0.02562 * 22 21 20 38 38 H 1.07999 * 119.97458 * 180.24912 * 23 22 21 39 39 H 1.07995 * 119.94671 * 179.70058 * 24 23 22 40 40 H 1.08000 * 119.96894 * 180.02562 * 25 24 23 41 41 H 1.08003 * 120.02935 * 179.97438 * 26 25 24 42 42 H 1.08010 * 119.74806 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8783 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0049 0.8811 -1.3819 10 1 6.5548 -0.3503 -0.7602 11 1 6.3829 0.9221 -2.8173 12 1 6.5570 2.0737 -0.6903 13 8 1.6559 2.0917 1.2406 14 6 0.4682 2.7279 1.2559 15 8 -0.2276 2.7396 0.2599 16 6 0.0129 3.4102 2.4816 17 6 -1.2223 4.0755 2.5093 18 6 -1.6068 4.6900 3.6712 19 6 -0.7641 4.6472 4.7780 20 8 -1.1397 5.2590 5.9270 21 6 -0.2452 5.3012 6.9491 22 6 -0.4536 4.5351 8.0870 23 6 0.4601 4.5753 9.1222 24 6 1.5757 5.3870 9.0301 25 6 1.7827 6.1559 7.8996 26 6 0.8748 6.1151 6.8593 27 7 0.3973 4.0124 4.7262 28 6 0.8041 3.4035 3.6318 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0612 -2.9499 35 1 -1.8570 4.0987 1.6358 36 1 -2.5534 5.2070 3.7268 37 1 -1.3270 3.9040 8.1612 38 1 0.3004 3.9761 10.0064 39 1 2.2863 5.4208 9.8426 40 1 2.6551 6.7887 7.8299 41 1 1.0368 6.7161 5.9767 42 1 1.7569 2.8948 3.6241 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787093307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:23 Heat of formation + Delta-G solvation = -55.071899 kcal Electronic energy + Delta-G solvation = -26556.034135 eV Core-core repulsion = 22659.978562 eV Total energy + Delta-G solvation = -3896.055573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32716 -39.96063 -39.02847 -37.67081 -35.81819 -33.56078 -32.71694 -31.65525 -31.27447 -31.15257 -29.86750 -27.32782 -24.99218 -24.05762 -23.23938 -22.97003 -22.26097 -21.03370 -19.65762 -19.15608 -17.61968 -17.58039 -16.80289 -16.43243 -16.37149 -15.74702 -15.36863 -15.20629 -14.70068 -14.56596 -14.32982 -14.17974 -13.72546 -13.63941 -13.11004 -12.97998 -12.84783 -12.61193 -12.53854 -12.07016 -11.91586 -11.52365 -11.38578 -11.22468 -11.13345 -10.99387 -10.67362 -10.31562 -10.13467 -10.07780 -9.80071 -9.60694 -9.39307 -9.23879 -9.09390 -8.84921 -8.66063 -8.47597 -6.21021 -4.28262 0.58567 0.88732 1.07868 1.12127 2.70198 2.98104 3.23360 3.28730 3.31859 3.53400 3.60341 3.84002 4.11500 4.31037 4.62164 4.62851 4.75754 4.81404 4.83086 4.89966 5.10222 5.11093 5.23666 5.32454 5.47605 5.56487 5.69546 5.82389 6.05509 6.11589 6.13317 6.20709 6.21210 6.22091 6.28332 6.43716 6.55008 6.83979 6.92994 7.13687 7.16516 7.20111 7.58177 7.63564 7.70359 7.89452 8.11920 8.55719 8.83785 9.37017 10.85737 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002792 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.423398 B =10027.458108 C =11253.389663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.350 6.350 14 C 0.504 3.496 15 O -0.511 6.511 16 C -0.197 4.197 17 C 0.014 3.986 18 C -0.194 4.194 19 C 0.333 3.667 20 O -0.247 6.247 21 C 0.095 3.905 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.119 4.119 25 C -0.105 4.105 26 C -0.115 4.115 27 N -0.534 5.534 28 C 0.198 3.802 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.267 0.733 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 9.260 18.864 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.267 6.267 14 C 0.348 3.652 15 O -0.402 6.402 16 C -0.201 4.201 17 C -0.011 4.011 18 C -0.215 4.215 19 C 0.156 3.844 20 O -0.153 6.153 21 C 0.053 3.947 22 C -0.135 4.135 23 C -0.126 4.126 24 C -0.137 4.137 25 C -0.123 4.123 26 C -0.134 4.134 27 N -0.256 5.256 28 C 0.042 3.958 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.174 0.826 36 H 0.167 0.833 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.502 9.259 19.160 22.563 hybrid contribution 0.475 -0.154 -0.985 1.105 sum -7.027 9.105 18.174 21.508 Atomic orbital electron populations 1.21864 0.98376 0.99066 1.00732 1.22030 0.92644 0.99280 1.03457 1.20731 0.95073 0.88753 0.78357 0.93358 1.21030 0.89554 1.39085 1.06316 0.91251 1.24878 0.99249 0.94740 0.95031 1.69887 1.35406 1.37741 1.09484 0.86283 0.83861 0.78709 0.77355 1.20330 1.20986 1.19606 1.86517 1.33357 1.62366 1.44419 1.20505 0.81194 0.76810 0.86691 1.90790 1.55579 1.58862 1.35019 1.20366 0.98007 1.06248 0.95483 1.21299 0.93461 0.88975 0.97380 1.20703 1.02566 1.07193 0.91022 1.20253 0.89940 0.88768 0.85474 1.84565 1.39966 1.70735 1.19984 1.18540 0.90992 0.97684 0.87446 1.21121 1.00427 0.98002 0.93947 1.21007 0.94064 0.99047 0.98443 1.21233 0.97719 0.96661 0.98122 1.21029 0.98789 0.99342 0.93184 1.21317 0.93521 0.98836 0.99702 1.67529 1.15476 1.13032 1.29537 1.23038 0.98222 0.89538 0.85043 0.94996 0.92769 0.94774 0.87261 0.93890 0.92350 0.82562 0.83273 0.85315 0.85299 0.85602 0.85382 0.85689 0.80251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.56 37.15 0.32 -2.77 16 2 C -0.14 -3.31 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.78 2.25 -27.88 -0.06 5.71 16 4 H 0.05 1.39 7.16 -51.92 -0.37 1.02 16 5 C -0.52 -14.26 8.90 -34.44 -0.31 -14.56 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.66 11.29 55.43 0.63 -24.03 16 9 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 O -0.35 -8.01 9.07 -40.60 -0.37 -8.38 16 14 C 0.50 10.29 6.35 34.50 0.22 10.51 16 15 O -0.51 -11.44 13.59 -19.27 -0.26 -11.70 16 16 C -0.20 -3.19 5.89 -104.84 -0.62 -3.80 16 17 C 0.01 0.19 9.66 -39.27 -0.38 -0.19 16 18 C -0.19 -2.28 9.97 -39.70 -0.40 -2.67 16 19 C 0.33 4.41 7.33 -16.93 -0.12 4.28 16 20 O -0.25 -3.10 9.96 -2.31 -0.02 -3.12 16 21 C 0.10 1.12 5.21 -39.20 -0.20 0.92 16 22 C -0.12 -1.18 9.99 -39.43 -0.39 -1.58 16 23 C -0.11 -0.91 10.04 -39.61 -0.40 -1.31 16 24 C -0.12 -0.98 10.04 -39.56 -0.40 -1.37 16 25 C -0.11 -0.96 10.04 -39.61 -0.40 -1.35 16 26 C -0.12 -1.26 9.45 -39.43 -0.37 -1.63 16 27 N -0.53 -7.74 9.03 -12.93 -0.12 -7.86 16 28 C 0.20 3.00 10.79 -17.11 -0.18 2.81 16 29 H 0.03 0.66 6.06 -51.92 -0.31 0.35 16 30 H 0.05 1.22 7.79 -51.93 -0.40 0.82 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 35 H 0.16 1.90 7.73 -52.49 -0.41 1.50 16 36 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 42 H 0.18 2.63 7.62 -52.48 -0.40 2.23 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -30.47 362.12 -8.78 -39.24 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.13 Total: 3.53 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.94 Total: -8.86 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.51 Total: -31.89 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.65 Total: -23.19 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.47 -8.78 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787093307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.828 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds