Wall clock time and date at job start Tue Mar 31 2020 15:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47380 * 2 1 4 4 H 1.09007 * 109.46762 * 304.99552 * 3 2 1 5 5 C 1.50701 * 109.47153 * 185.00285 * 3 2 1 6 6 H 1.08001 * 119.99627 * 239.99976 * 5 3 2 7 7 C 1.37874 * 120.00123 * 59.99535 * 5 3 2 8 8 N 1.31511 * 120.00161 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99882 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46937 * 90.00108 * 9 7 5 11 11 H 1.48499 * 109.47198 * 209.99896 * 9 7 5 12 12 H 1.48503 * 109.47230 * 330.00199 * 9 7 5 13 13 O 1.45195 * 109.47052 * 64.99673 * 3 2 1 14 14 C 1.34738 * 117.00313 * 269.99971 * 13 3 2 15 15 O 1.21506 * 119.99995 * 0.02562 * 14 13 3 16 16 C 1.47482 * 120.00253 * 180.02562 * 14 13 3 17 17 C 1.40323 * 120.49826 * 180.02562 * 16 14 13 18 18 C 1.36946 * 118.46542 * 179.70782 * 17 16 14 19 19 C 1.39176 * 119.40002 * 0.53418 * 18 17 16 20 20 O 1.35486 * 119.51626 * 179.72690 * 19 18 17 21 21 C 1.35890 * 117.99693 * 185.75974 * 20 19 18 22 22 C 1.38752 * 120.05761 * 250.69823 * 21 20 19 23 23 C 1.38132 * 119.94483 * 179.72265 * 22 21 20 24 24 C 1.38270 * 120.05797 * 0.55897 * 23 22 21 25 25 C 1.38275 * 120.11092 * 359.71454 * 24 23 22 26 26 C 1.38136 * 120.05851 * 0.02562 * 25 24 23 27 27 N 1.32460 * 120.96875 * 359.45483 * 19 18 17 28 28 C 1.31682 * 121.66273 * 0.27157 * 27 19 18 29 29 H 1.09008 * 109.46883 * 300.00460 * 1 2 3 30 30 H 1.09005 * 109.47078 * 59.99766 * 1 2 3 31 31 H 1.09000 * 109.47279 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47498 * 239.99863 * 2 1 3 33 33 H 1.09000 * 109.47343 * 119.99870 * 2 1 3 34 34 H 0.97007 * 120.00187 * 180.02562 * 8 7 5 35 35 H 1.08001 * 120.76431 * 359.97438 * 17 16 14 36 36 H 1.08004 * 120.30227 * 180.26198 * 18 17 16 37 37 H 1.08009 * 120.02569 * 0.02562 * 22 21 20 38 38 H 1.07999 * 119.97458 * 180.24912 * 23 22 21 39 39 H 1.07995 * 119.94671 * 179.70058 * 24 23 22 40 40 H 1.08000 * 119.96894 * 180.02562 * 25 24 23 41 41 H 1.08003 * 120.02935 * 179.97438 * 26 25 24 42 42 H 1.08010 * 119.74806 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8783 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0049 0.8811 -1.3819 10 1 6.5548 -0.3503 -0.7602 11 1 6.3829 0.9221 -2.8173 12 1 6.5570 2.0737 -0.6903 13 8 1.6559 2.0917 1.2406 14 6 0.4682 2.7279 1.2559 15 8 -0.2276 2.7396 0.2599 16 6 0.0129 3.4102 2.4816 17 6 -1.2223 4.0755 2.5093 18 6 -1.6068 4.6900 3.6712 19 6 -0.7641 4.6472 4.7780 20 8 -1.1397 5.2590 5.9270 21 6 -0.2452 5.3012 6.9491 22 6 -0.4536 4.5351 8.0870 23 6 0.4601 4.5753 9.1222 24 6 1.5757 5.3870 9.0301 25 6 1.7827 6.1559 7.8996 26 6 0.8748 6.1151 6.8593 27 7 0.3973 4.0124 4.7262 28 6 0.8041 3.4035 3.6318 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0612 -2.9499 35 1 -1.8570 4.0987 1.6358 36 1 -2.5534 5.2070 3.7268 37 1 -1.3270 3.9040 8.1612 38 1 0.3004 3.9761 10.0064 39 1 2.2863 5.4208 9.8426 40 1 2.6551 6.7887 7.8299 41 1 1.0368 6.7161 5.9767 42 1 1.7569 2.8948 3.6241 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787093307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:22 Heat of formation + Delta-G solvation = -71.161345 kcal Electronic energy + Delta-G solvation = -26556.731826 eV Core-core repulsion = 22659.978562 eV Total energy + Delta-G solvation = -3896.753264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35897 -41.37010 -40.20527 -38.57363 -37.59349 -35.51360 -33.83859 -33.41302 -32.45353 -31.94486 -30.75941 -29.28479 -26.27754 -25.15388 -25.05868 -23.70807 -23.30585 -22.47947 -21.47552 -20.07791 -19.25564 -18.81660 -18.28705 -17.55711 -17.42091 -17.25068 -17.01127 -16.48711 -16.10347 -15.72251 -15.35872 -15.06592 -14.92924 -14.79539 -14.52982 -14.40940 -14.12726 -13.89035 -13.59542 -13.37790 -13.29720 -13.26245 -13.10951 -12.81946 -12.57890 -12.53970 -12.14569 -11.90617 -11.77534 -11.59222 -11.39382 -11.21952 -10.84830 -10.82377 -10.51847 -10.01812 -9.95281 -9.60228 -8.26692 -6.43088 -0.59419 0.03302 0.10011 0.38827 1.42727 1.44356 1.53038 1.55462 1.79605 1.95328 2.41617 2.59931 2.85458 3.03226 3.04402 3.59590 3.71761 3.83507 3.93542 3.96836 4.02597 4.22350 4.38434 4.40068 4.40570 4.46230 4.54306 4.55200 4.63365 4.75414 4.84567 4.96832 5.02480 5.10368 5.19679 5.21811 5.36273 5.37368 5.41049 5.51980 5.52407 5.67582 5.79866 5.95524 6.10211 6.23257 6.55177 6.60936 6.93769 7.27841 8.80073 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002792 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.423398 B =10027.458108 C =11253.389663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.227 3.773 4 H 0.010 0.990 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.266 1.266 13 O -0.357 6.357 14 C 0.503 3.497 15 O -0.537 6.537 16 C -0.217 4.217 17 C 0.021 3.979 18 C -0.178 4.178 19 C 0.333 3.667 20 O -0.245 6.245 21 C 0.064 3.936 22 C -0.127 4.127 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.112 4.112 26 C -0.132 4.132 27 N -0.543 5.543 28 C 0.201 3.799 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.270 0.730 35 H 0.169 0.831 36 H 0.186 0.814 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.119 0.881 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.501 9.707 21.192 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.174 3.826 4 H 0.028 0.972 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.191 1.191 13 O -0.273 6.273 14 C 0.349 3.651 15 O -0.429 6.429 16 C -0.221 4.221 17 C -0.004 4.004 18 C -0.198 4.198 19 C 0.156 3.844 20 O -0.150 6.150 21 C 0.023 3.977 22 C -0.146 4.146 23 C -0.126 4.126 24 C -0.134 4.134 25 C -0.130 4.130 26 C -0.150 4.150 27 N -0.265 5.265 28 C 0.044 3.956 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.186 0.814 36 H 0.203 0.797 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.173 0.827 40 H 0.165 0.835 41 H 0.137 0.863 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.392 9.720 21.514 24.738 hybrid contribution 0.375 -0.195 -1.547 1.604 sum -7.018 9.526 19.967 23.209 Atomic orbital electron populations 1.21716 0.96290 1.00608 1.00121 1.21877 0.94470 0.98049 1.02414 1.20420 0.94561 0.89268 0.78348 0.97218 1.21322 0.90448 1.39945 1.06917 0.91504 1.25766 1.04071 0.93927 0.94376 1.70008 1.37370 1.37913 1.09872 0.85237 0.77906 0.79089 0.77522 1.19253 1.20400 1.19071 1.86499 1.35035 1.62973 1.42801 1.21168 0.79978 0.76088 0.87864 1.90768 1.55937 1.59869 1.36356 1.20146 0.99814 1.08223 0.93911 1.21449 0.92321 0.88152 0.98451 1.20996 1.03353 1.05960 0.89503 1.20610 0.89596 0.87904 0.86295 1.84585 1.40264 1.70284 1.19913 1.18848 0.91800 0.99305 0.87790 1.21358 1.01254 0.98004 0.93970 1.21394 0.93478 0.98923 0.98766 1.21641 0.97937 0.95459 0.98376 1.21343 0.98941 0.99669 0.92998 1.21422 0.94051 0.99208 1.00364 1.67539 1.16418 1.13497 1.29055 1.22939 0.98066 0.89584 0.84991 0.94579 0.94326 0.92051 0.89457 0.93535 0.92036 0.81386 0.79719 0.84535 0.82568 0.82713 0.83484 0.86309 0.80573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 8.56 71.98 0.62 -5.05 16 2 C -0.13 -6.50 5.49 30.59 0.17 -6.33 16 3 C 0.23 12.24 2.25 29.85 0.07 12.30 16 4 H 0.01 0.61 7.16 -2.38 -0.02 0.59 16 5 C -0.55 -30.80 8.90 25.60 0.23 -30.58 16 6 H 0.07 3.68 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.01 5.29 84.65 0.45 1.46 16 8 N -0.91 -51.86 11.29 21.45 0.24 -51.62 16 9 Si 0.98 42.61 29.54 68.60 2.03 44.63 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 O -0.36 -16.91 9.07 -56.49 -0.51 -17.42 16 14 C 0.50 21.14 6.35 70.26 0.45 21.59 16 15 O -0.54 -24.80 13.59 19.82 0.27 -24.53 16 16 C -0.22 -7.04 5.89 -20.00 -0.12 -7.16 16 17 C 0.02 0.54 9.66 22.47 0.22 0.75 16 18 C -0.18 -3.80 9.97 22.19 0.22 -3.58 16 19 C 0.33 8.41 7.33 84.82 0.62 9.03 16 20 O -0.25 -5.86 9.96 -31.19 -0.31 -6.17 16 21 C 0.06 1.45 5.21 22.51 0.12 1.57 16 22 C -0.13 -2.39 9.99 22.37 0.22 -2.17 16 23 C -0.11 -1.55 10.04 22.25 0.22 -1.32 16 24 C -0.12 -1.58 10.04 22.29 0.22 -1.36 16 25 C -0.11 -1.83 10.04 22.25 0.22 -1.60 16 26 C -0.13 -2.78 9.45 22.37 0.21 -2.57 16 27 N -0.54 -15.46 9.03 -307.68 -2.78 -18.24 16 28 C 0.20 6.12 10.79 85.05 0.92 7.03 16 29 H 0.04 1.51 6.06 -2.38 -0.01 1.50 16 30 H 0.04 1.77 7.79 -2.38 -0.02 1.75 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 4.77 5.95 -2.39 -0.01 4.75 16 33 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 35 H 0.17 3.88 7.73 -2.91 -0.02 3.86 16 36 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 40 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.12 2.53 8.06 -2.91 -0.02 2.50 16 42 H 0.18 5.34 7.62 -2.91 -0.02 5.32 16 Total: -1.00 -67.53 362.12 5.03 -62.50 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 1.04 Total: 18.84 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.06 Total: -8.00 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: -2.54 Total: -69.86 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -0.55 Total: -48.12 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -67.53 5.03 -62.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787093307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.660 kcal (2) G-P(sol) polarization free energy of solvation -67.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds