Wall clock time and date at job start Tue Mar 31 2020 14:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34245 * 126.43830 * 2 1 4 4 C 1.34486 * 108.18308 * 179.97438 * 3 2 1 5 5 C 1.47873 * 125.48055 * 180.02562 * 4 3 2 6 6 C 1.39548 * 120.14131 * 359.72113 * 5 4 3 7 7 C 1.37976 * 119.85279 * 179.76736 * 6 5 4 8 8 C 1.38350 * 120.14257 * 0.51116 * 7 6 5 9 9 C 1.38356 * 120.28822 * 359.74179 * 8 7 6 10 10 C 1.37969 * 120.14173 * 0.02562 * 9 8 7 11 11 N 1.30882 * 109.04067 * 0.02562 * 4 3 2 12 12 C 1.35824 * 108.40759 * 359.75371 * 11 4 3 13 13 C 1.47320 * 126.37634 * 180.27939 * 12 11 4 14 14 O 1.21525 * 120.00081 * 180.12655 * 13 12 11 15 15 O 1.34779 * 119.99452 * 0.13279 * 13 12 11 16 16 C 1.45200 * 116.99541 * 177.70770 * 15 13 12 17 17 C 1.50706 * 112.85079 * 65.17740 * 16 15 13 18 18 H 1.07997 * 119.99738 * 242.51785 * 17 16 15 19 19 C 1.37877 * 120.00050 * 62.51699 * 17 16 15 20 20 N 1.31514 * 120.00026 * 353.77196 * 19 17 16 21 21 Si 1.86797 * 119.99739 * 173.77636 * 19 17 16 22 22 H 1.48499 * 109.47373 * 59.99959 * 21 19 17 23 23 H 1.48504 * 109.46928 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46995 * 299.99480 * 21 19 17 25 25 C 1.53779 * 113.61862 * 293.97779 * 16 15 13 26 26 C 1.53951 * 87.02314 * 220.04931 * 25 16 15 27 27 C 1.53781 * 87.11144 * 25.36355 * 26 25 16 28 28 H 1.08994 * 109.47120 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46776 * 120.02117 * 1 2 3 30 30 H 1.08998 * 109.47046 * 240.01924 * 1 2 3 31 31 H 1.08000 * 120.07229 * 0.02833 * 6 5 4 32 32 H 1.08001 * 119.92564 * 180.25711 * 7 6 5 33 33 H 1.08002 * 119.85392 * 179.71992 * 8 7 6 34 34 H 1.07992 * 119.92620 * 180.02562 * 9 8 7 35 35 H 1.07997 * 120.07522 * 180.02562 * 10 9 8 36 36 H 0.96994 * 120.00153 * 185.01747 * 20 19 17 37 37 H 1.09007 * 113.61301 * 334.56967 * 25 16 15 38 38 H 1.08998 * 113.61445 * 105.46604 * 25 16 15 39 39 H 1.09000 * 113.54060 * 270.81359 * 26 25 16 40 40 H 1.09000 * 113.74676 * 139.93893 * 26 25 16 41 41 H 1.09003 * 113.61682 * 220.09725 * 27 26 25 42 42 H 1.08997 * 113.69692 * 89.19723 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3044 1.0800 0.0000 4 6 3.5816 0.6587 0.0006 5 6 4.7739 1.5334 0.0013 6 6 4.6251 2.9209 -0.0044 7 6 5.7416 3.7314 0.0012 8 6 7.0067 3.1714 0.0017 9 6 7.1611 1.7965 0.0021 10 6 6.0527 0.9748 0.0014 11 7 3.5995 -0.6500 0.0004 12 6 2.3168 -1.0965 0.0052 13 6 1.8816 -2.5039 0.0125 14 8 0.6966 -2.7735 0.0140 15 8 2.7977 -3.4925 0.0176 16 6 2.2976 -4.8543 0.0765 17 6 1.5119 -5.2427 -1.1496 18 1 0.4675 -5.5029 -1.0616 19 6 2.1266 -5.2658 -2.3836 20 7 3.3617 -4.8325 -2.5112 21 14 1.2049 -5.9123 -3.8741 22 1 -0.0142 -5.0938 -4.0958 23 1 2.0800 -5.8304 -5.0711 24 1 0.8160 -7.3264 -3.6405 25 6 1.5858 -5.1928 1.3969 26 6 2.2785 -6.5658 1.3252 27 6 3.3656 -5.8861 0.4761 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3633 -0.5135 0.8901 31 1 3.6380 3.3593 -0.0089 32 1 5.6278 4.8054 0.0009 33 1 7.8775 3.8102 0.0015 34 1 8.1513 1.3655 0.0030 35 1 6.1745 -0.0983 0.0021 36 1 3.7691 -4.7804 -3.3899 37 1 1.9131 -4.5820 2.2384 38 1 0.5008 -5.2448 1.3072 39 1 1.7041 -7.3153 0.7807 40 1 2.6389 -6.9264 2.2886 41 1 3.7153 -6.4971 -0.3561 42 1 4.1811 -5.4650 1.0640 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788144280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:44 Heat of formation + Delta-G solvation = -11.830720 kcal Electronic energy + Delta-G solvation = -27436.175699 eV Core-core repulsion = 23541.995204 eV Total energy + Delta-G solvation = -3894.180495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.16718 -39.21295 -39.06263 -37.04096 -34.63383 -34.15003 -32.87379 -32.26808 -31.12027 -30.92331 -27.16472 -26.11423 -24.55784 -24.42320 -23.15424 -22.82037 -22.06284 -21.08451 -19.68891 -18.53817 -17.80787 -17.03164 -16.77518 -16.25515 -15.61851 -15.23601 -15.03849 -14.85060 -14.76803 -14.19461 -13.94464 -13.78269 -13.59298 -13.36364 -13.20915 -13.03457 -12.74640 -12.34984 -12.22157 -11.62832 -11.56208 -11.26587 -11.22910 -11.03523 -11.00276 -10.86355 -10.46005 -10.37694 -10.27950 -9.89896 -9.79395 -9.61533 -9.51464 -9.14408 -8.79245 -8.54801 -8.50148 -8.12492 -6.07136 -4.20813 0.60706 1.22030 1.55229 2.50944 2.52911 3.28621 3.33547 3.36788 3.65572 3.68502 4.02722 4.12096 4.36957 4.67323 4.77139 4.84862 4.94439 5.16398 5.19828 5.24578 5.41890 5.46859 5.55625 5.64781 5.72089 5.78481 5.84977 5.87311 5.99161 6.02303 6.11967 6.22987 6.29671 6.32232 6.36119 6.50041 6.56931 6.67822 6.72449 6.93081 7.13398 7.31476 7.55137 7.74532 7.78253 7.90546 8.32135 8.82214 9.18275 9.49275 10.96563 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013918 B = 0.003496 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.345307 B = 8007.775562 C = 8215.460207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.030 3.970 3 O -0.195 6.195 4 C 0.211 3.789 5 C -0.007 4.007 6 C -0.094 4.094 7 C -0.124 4.124 8 C -0.107 4.107 9 C -0.120 4.120 10 C -0.070 4.070 11 N -0.413 5.413 12 C -0.032 4.032 13 C 0.548 3.452 14 O -0.502 6.502 15 O -0.319 6.319 16 C 0.238 3.762 17 C -0.518 4.518 18 H 0.069 0.931 19 C 0.076 3.924 20 N -0.856 5.856 21 Si 0.892 3.108 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.159 4.159 26 C -0.131 4.131 27 C -0.107 4.107 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.143 0.857 36 H 0.264 0.736 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 15.013 5.897 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.025 4.025 3 O -0.082 6.082 4 C 0.006 3.994 5 C -0.008 4.008 6 C -0.113 4.113 7 C -0.142 4.142 8 C -0.125 4.125 9 C -0.138 4.138 10 C -0.089 4.089 11 N -0.142 5.142 12 C -0.153 4.153 13 C 0.390 3.610 14 O -0.392 6.392 15 O -0.234 6.234 16 C 0.205 3.795 17 C -0.555 4.555 18 H 0.087 0.913 19 C -0.130 4.130 20 N -0.491 5.491 21 Si 0.719 3.281 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.197 4.197 26 C -0.168 4.168 27 C -0.145 4.145 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.947 14.441 5.775 16.046 hybrid contribution -1.042 0.144 -1.019 1.465 sum 2.904 14.585 4.755 15.613 Atomic orbital electron populations 1.20448 0.82257 1.03405 1.05857 1.23767 0.95014 0.83095 1.00649 1.84299 1.17606 1.35959 1.70366 1.23708 0.82443 0.89239 1.04033 1.17285 0.87782 0.90847 1.04908 1.21222 0.99749 0.91793 0.98547 1.21034 0.92130 0.99879 1.01119 1.21338 0.97442 0.95231 0.98520 1.21137 0.98741 0.93450 1.00487 1.21323 0.90158 1.01594 0.95821 1.71125 1.21893 1.07161 1.14004 1.21129 0.88302 0.94562 1.11311 1.19021 0.84536 0.83641 0.73787 1.90752 1.17756 1.83994 1.46687 1.86673 1.38866 1.17479 1.80343 1.21277 0.91540 0.74712 0.91988 1.20899 0.96608 1.47144 0.90850 0.91337 1.25093 0.94602 0.94265 0.99082 1.70043 1.12526 1.42795 1.23750 0.86655 0.79830 0.79810 0.81808 1.20049 1.21144 1.19791 1.23563 1.00416 0.96814 0.98891 1.22560 0.99116 0.96512 0.98644 1.22893 0.95988 0.97153 0.98431 0.90588 0.88004 0.88197 0.85252 0.85406 0.85637 0.85047 0.83905 0.92631 0.92268 0.91714 0.90197 0.92970 0.90712 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 9.12 36.01 0.33 -0.54 16 2 C 0.03 0.53 7.44 -35.00 -0.26 0.27 16 3 O -0.19 -3.22 10.45 5.37 0.06 -3.16 16 4 C 0.21 3.69 7.88 -14.01 -0.11 3.58 16 5 C -0.01 -0.10 5.87 -104.98 -0.62 -0.72 16 6 C -0.09 -1.05 9.71 -39.19 -0.38 -1.43 16 7 C -0.12 -1.11 10.03 -39.64 -0.40 -1.51 16 8 C -0.11 -0.92 10.04 -39.50 -0.40 -1.32 16 9 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 10 C -0.07 -0.92 9.68 -39.19 -0.38 -1.30 16 11 N -0.41 -8.70 10.96 -8.28 -0.09 -8.79 16 12 C -0.03 -0.70 7.03 -83.10 -0.58 -1.29 16 13 C 0.55 13.68 7.52 34.42 0.26 13.94 16 14 O -0.50 -12.64 14.08 -19.28 -0.27 -12.91 16 15 O -0.32 -8.64 9.77 -40.71 -0.40 -9.04 16 16 C 0.24 6.18 0.47 -90.95 -0.04 6.14 16 17 C -0.52 -14.46 7.08 -34.44 -0.24 -14.70 16 18 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 19 C 0.08 2.13 5.30 -17.82 -0.09 2.04 16 20 N -0.86 -24.83 12.79 55.43 0.71 -24.12 16 21 Si 0.89 21.50 29.55 -169.99 -5.02 16.48 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.16 -3.58 6.57 -25.83 -0.17 -3.75 16 26 C -0.13 -2.67 7.81 -25.83 -0.20 -2.87 16 27 C -0.11 -2.52 7.29 -25.92 -0.19 -2.71 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.48 8.08 -51.93 -0.42 1.06 16 30 H 0.10 1.34 8.06 -51.93 -0.42 0.92 16 31 H 0.13 1.28 7.89 -52.49 -0.41 0.87 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.14 2.05 7.82 -52.49 -0.41 1.63 16 36 H 0.26 7.33 8.32 -40.82 -0.34 6.99 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.47 8.09 -51.93 -0.42 1.05 16 39 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.87 7.98 -51.93 -0.41 1.46 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -33.07 366.71 -8.79 -41.86 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.42 Total: 1.95 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.88 Total: -7.78 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.62 Total: -32.92 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.61 Total: -25.12 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.07 -8.79 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788144280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.034 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds