Wall clock time and date at job start Tue Mar 31 2020 14:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34245 * 126.43830 * 2 1 4 4 C 1.34486 * 108.18308 * 179.97438 * 3 2 1 5 5 C 1.47873 * 125.48055 * 180.02562 * 4 3 2 6 6 C 1.39548 * 120.14131 * 359.72113 * 5 4 3 7 7 C 1.37976 * 119.85279 * 179.76736 * 6 5 4 8 8 C 1.38350 * 120.14257 * 0.51116 * 7 6 5 9 9 C 1.38356 * 120.28822 * 359.74179 * 8 7 6 10 10 C 1.37969 * 120.14173 * 0.02562 * 9 8 7 11 11 N 1.30882 * 109.04067 * 0.02562 * 4 3 2 12 12 C 1.35824 * 108.40759 * 359.75371 * 11 4 3 13 13 C 1.47320 * 126.37634 * 180.27939 * 12 11 4 14 14 O 1.21525 * 120.00081 * 180.12655 * 13 12 11 15 15 O 1.34779 * 119.99452 * 0.13279 * 13 12 11 16 16 C 1.45200 * 116.99541 * 177.70770 * 15 13 12 17 17 C 1.50706 * 112.85079 * 65.17740 * 16 15 13 18 18 H 1.07997 * 119.99738 * 242.51785 * 17 16 15 19 19 C 1.37877 * 120.00050 * 62.51699 * 17 16 15 20 20 N 1.31514 * 120.00026 * 353.77196 * 19 17 16 21 21 Si 1.86797 * 119.99739 * 173.77636 * 19 17 16 22 22 H 1.48499 * 109.47373 * 59.99959 * 21 19 17 23 23 H 1.48504 * 109.46928 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46995 * 299.99480 * 21 19 17 25 25 C 1.53779 * 113.61862 * 293.97779 * 16 15 13 26 26 C 1.53951 * 87.02314 * 220.04931 * 25 16 15 27 27 C 1.53781 * 87.11144 * 25.36355 * 26 25 16 28 28 H 1.08994 * 109.47120 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46776 * 120.02117 * 1 2 3 30 30 H 1.08998 * 109.47046 * 240.01924 * 1 2 3 31 31 H 1.08000 * 120.07229 * 0.02833 * 6 5 4 32 32 H 1.08001 * 119.92564 * 180.25711 * 7 6 5 33 33 H 1.08002 * 119.85392 * 179.71992 * 8 7 6 34 34 H 1.07992 * 119.92620 * 180.02562 * 9 8 7 35 35 H 1.07997 * 120.07522 * 180.02562 * 10 9 8 36 36 H 0.96994 * 120.00153 * 185.01747 * 20 19 17 37 37 H 1.09007 * 113.61301 * 334.56967 * 25 16 15 38 38 H 1.08998 * 113.61445 * 105.46604 * 25 16 15 39 39 H 1.09000 * 113.54060 * 270.81359 * 26 25 16 40 40 H 1.09000 * 113.74676 * 139.93893 * 26 25 16 41 41 H 1.09003 * 113.61682 * 220.09725 * 27 26 25 42 42 H 1.08997 * 113.69692 * 89.19723 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3044 1.0800 0.0000 4 6 3.5816 0.6587 0.0006 5 6 4.7739 1.5334 0.0013 6 6 4.6251 2.9209 -0.0044 7 6 5.7416 3.7314 0.0012 8 6 7.0067 3.1714 0.0017 9 6 7.1611 1.7965 0.0021 10 6 6.0527 0.9748 0.0014 11 7 3.5995 -0.6500 0.0004 12 6 2.3168 -1.0965 0.0052 13 6 1.8816 -2.5039 0.0125 14 8 0.6966 -2.7735 0.0140 15 8 2.7977 -3.4925 0.0176 16 6 2.2976 -4.8543 0.0765 17 6 1.5119 -5.2427 -1.1496 18 1 0.4675 -5.5029 -1.0616 19 6 2.1266 -5.2658 -2.3836 20 7 3.3617 -4.8325 -2.5112 21 14 1.2049 -5.9123 -3.8741 22 1 -0.0142 -5.0938 -4.0958 23 1 2.0800 -5.8304 -5.0711 24 1 0.8160 -7.3264 -3.6405 25 6 1.5858 -5.1928 1.3969 26 6 2.2785 -6.5658 1.3252 27 6 3.3656 -5.8861 0.4761 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3633 -0.5135 0.8901 31 1 3.6380 3.3593 -0.0089 32 1 5.6278 4.8054 0.0009 33 1 7.8775 3.8102 0.0015 34 1 8.1513 1.3655 0.0030 35 1 6.1745 -0.0983 0.0021 36 1 3.7691 -4.7804 -3.3899 37 1 1.9131 -4.5820 2.2384 38 1 0.5008 -5.2448 1.3072 39 1 1.7041 -7.3153 0.7807 40 1 2.6389 -6.9264 2.2886 41 1 3.7153 -6.4971 -0.3561 42 1 4.1811 -5.4650 1.0640 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788144280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:44 Heat of formation + Delta-G solvation = -31.858637 kcal Electronic energy + Delta-G solvation = -27437.044175 eV Core-core repulsion = 23541.995204 eV Total energy + Delta-G solvation = -3895.048971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.57561 -41.05450 -39.98924 -38.89340 -36.19111 -35.97704 -34.40071 -34.09652 -31.97586 -31.92683 -28.67228 -28.01038 -26.41084 -25.93985 -24.72799 -23.83397 -23.36797 -22.36448 -21.19046 -20.49357 -19.30331 -18.62114 -18.19075 -17.66246 -17.10321 -16.83815 -16.73694 -16.39275 -16.11170 -15.80003 -15.63846 -15.02049 -14.75850 -14.63050 -14.39283 -14.27374 -14.14598 -13.74302 -13.54184 -13.44044 -13.03603 -12.95825 -12.85138 -12.58033 -12.41366 -12.28721 -12.15454 -12.10042 -11.84408 -11.79955 -11.68721 -11.37931 -10.82235 -10.74905 -10.59599 -10.45376 -9.96675 -9.34741 -8.19935 -6.40408 -0.47664 0.13521 0.40389 1.17576 1.20978 1.34835 1.36046 1.44542 2.00626 2.23413 2.34871 2.74608 2.82962 3.09512 3.42981 3.84209 3.90029 3.97526 4.00434 4.05127 4.06798 4.17688 4.26095 4.31587 4.45314 4.51306 4.52028 4.54344 4.71960 4.81199 4.82967 4.89262 4.94584 5.01782 5.07911 5.13298 5.34697 5.38204 5.39609 5.46485 5.51567 5.59762 5.71679 5.90957 5.93995 6.26507 6.36861 6.65616 7.21288 7.36457 8.83245 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013918 B = 0.003496 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.345307 B = 8007.775562 C = 8215.460207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.054 3.946 3 O -0.182 6.182 4 C 0.228 3.772 5 C -0.044 4.044 6 C -0.091 4.091 7 C -0.116 4.116 8 C -0.090 4.090 9 C -0.122 4.122 10 C -0.090 4.090 11 N -0.462 5.462 12 C -0.084 4.084 13 C 0.540 3.460 14 O -0.517 6.517 15 O -0.343 6.343 16 C 0.211 3.789 17 C -0.530 4.530 18 H 0.057 0.943 19 C 0.030 3.970 20 N -0.888 5.888 21 Si 0.952 3.048 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.151 4.151 26 C -0.107 4.107 27 C -0.109 4.109 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.115 0.885 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.862 17.679 6.296 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.002 4.002 3 O -0.070 6.070 4 C 0.021 3.979 5 C -0.045 4.045 6 C -0.111 4.111 7 C -0.133 4.133 8 C -0.108 4.108 9 C -0.139 4.139 10 C -0.110 4.110 11 N -0.191 5.191 12 C -0.203 4.203 13 C 0.384 3.616 14 O -0.408 6.408 15 O -0.258 6.258 16 C 0.177 3.823 17 C -0.567 4.567 18 H 0.075 0.925 19 C -0.173 4.173 20 N -0.524 5.524 21 Si 0.776 3.224 22 H -0.203 1.203 23 H -0.206 1.206 24 H -0.183 1.183 25 C -0.189 4.189 26 C -0.145 4.145 27 C -0.147 4.147 28 H 0.138 0.862 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.160 0.840 32 H 0.184 0.816 33 H 0.183 0.817 34 H 0.170 0.830 35 H 0.133 0.867 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.231 17.085 6.185 18.656 hybrid contribution -1.015 -0.478 -1.109 1.577 sum 3.216 16.607 5.077 17.661 Atomic orbital electron populations 1.20646 0.79362 1.06209 1.05549 1.24336 0.96292 0.82118 0.97464 1.84337 1.17314 1.35138 1.70181 1.24420 0.83452 0.88763 1.01235 1.17510 0.86592 0.91915 1.08523 1.21457 1.01497 0.90383 0.97742 1.21501 0.91274 1.01510 0.99063 1.21837 0.98874 0.94707 0.95413 1.21421 0.98533 0.94245 0.99735 1.21290 0.91253 1.00878 0.97570 1.71037 1.22084 1.09205 1.16758 1.20940 0.89785 0.93885 1.15680 1.19473 0.84313 0.84630 0.73144 1.90698 1.17920 1.84589 1.47617 1.86643 1.39954 1.18337 1.80898 1.21602 0.93015 0.74731 0.92944 1.21074 0.96228 1.47251 0.92190 0.92458 1.25826 0.95369 0.94337 1.01782 1.70173 1.13978 1.44150 1.24136 0.85714 0.78392 0.79732 0.78515 1.20255 1.20590 1.18295 1.23472 0.99825 0.98174 0.97399 1.22477 0.96912 0.95270 0.99791 1.22884 0.96611 0.96778 0.98382 0.86211 0.88749 0.87743 0.84002 0.81637 0.81734 0.82954 0.86684 0.92848 0.91438 0.92382 0.90064 0.89024 0.92960 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.64 9.12 71.24 0.65 -0.99 16 2 C 0.05 1.95 7.44 25.24 0.19 2.14 16 3 O -0.18 -5.99 10.45 -3.72 -0.04 -6.03 16 4 C 0.23 8.23 7.88 87.39 0.69 8.92 16 5 C -0.04 -1.26 5.87 -20.09 -0.12 -1.37 16 6 C -0.09 -1.84 9.71 22.52 0.22 -1.62 16 7 C -0.12 -1.59 10.03 22.23 0.22 -1.37 16 8 C -0.09 -1.18 10.04 22.32 0.22 -0.96 16 9 C -0.12 -2.23 10.03 22.23 0.22 -2.01 16 10 C -0.09 -2.45 9.68 22.52 0.22 -2.23 16 11 N -0.46 -20.76 10.96 -294.31 -3.23 -23.99 16 12 C -0.08 -3.87 7.03 40.47 0.28 -3.58 16 13 C 0.54 28.47 7.52 70.21 0.53 29.00 16 14 O -0.52 -27.21 14.08 19.75 0.28 -26.93 16 15 O -0.34 -19.65 9.77 -56.90 -0.56 -20.20 16 16 C 0.21 11.33 0.47 -11.01 -0.01 11.32 16 17 C -0.53 -30.62 7.08 25.60 0.18 -30.44 16 18 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 19 C 0.03 1.74 5.30 84.65 0.45 2.19 16 20 N -0.89 -53.70 12.79 21.45 0.27 -53.42 16 21 Si 0.95 45.13 29.55 68.60 2.03 47.16 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 C -0.15 -6.87 6.57 31.18 0.20 -6.67 16 26 C -0.11 -4.31 7.81 31.18 0.24 -4.06 16 27 C -0.11 -5.26 7.29 31.12 0.23 -5.03 16 28 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.73 8.08 -2.38 -0.02 2.71 16 30 H 0.10 2.74 8.06 -2.39 -0.02 2.72 16 31 H 0.14 2.43 7.89 -2.91 -0.02 2.41 16 32 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.12 3.66 7.82 -2.91 -0.02 3.64 16 36 H 0.26 15.17 8.32 -92.71 -0.77 14.40 16 37 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 38 H 0.06 2.67 8.09 -2.39 -0.02 2.65 16 39 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.05 2.71 7.98 -2.39 -0.02 2.69 16 42 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -77.42 366.71 4.42 -73.00 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.04 Total: 17.20 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 4.63 Total: -6.78 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -2.95 Total: -77.41 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -0.32 Total: -53.17 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -77.42 4.42 -73.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788144280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.139 kcal (2) G-P(sol) polarization free energy of solvation -77.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds