Wall clock time and date at job start Tue Mar 31 2020 15:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 H 1.09000 * 109.47465 * 303.85671 * 3 2 1 5 5 C 1.50700 * 109.47121 * 183.85567 * 3 2 1 6 6 H 1.07998 * 120.00778 * 239.99934 * 5 3 2 7 7 C 1.37883 * 119.99868 * 60.00251 * 5 3 2 8 8 N 1.31510 * 119.99886 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00109 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47288 * 270.00449 * 9 7 5 11 11 H 1.48507 * 109.47108 * 30.00221 * 9 7 5 12 12 H 1.48501 * 109.47443 * 150.00181 * 9 7 5 13 13 N 1.46496 * 109.47099 * 63.86015 * 3 2 1 14 14 S 1.65606 * 119.99686 * 215.58278 * 13 3 2 15 15 O 1.42102 * 104.27628 * 180.02562 * 14 13 3 16 16 O 1.42090 * 104.27857 * 307.87708 * 14 13 3 17 17 C 1.81396 * 104.44849 * 63.95135 * 14 13 3 18 18 C 1.53008 * 109.47098 * 175.08164 * 17 14 13 19 19 C 1.50702 * 109.46833 * 179.97438 * 18 17 14 20 20 C 1.38261 * 119.94344 * 269.72379 * 19 18 17 21 21 C 1.38153 * 120.05337 * 179.73051 * 20 19 18 22 22 C 1.38723 * 119.94210 * 0.57035 * 21 20 19 23 23 O 1.35905 * 120.05759 * 179.68270 * 22 21 20 24 24 C 1.42896 * 116.99611 * 0.02562 * 23 22 21 25 25 C 1.38735 * 119.89147 * 359.70507 * 22 21 20 26 26 C 1.38149 * 119.94307 * 359.97438 * 25 22 21 27 27 H 1.08995 * 109.47568 * 184.32505 * 1 2 3 28 28 H 1.09003 * 109.47212 * 304.33032 * 1 2 3 29 29 H 1.08997 * 109.47121 * 64.32255 * 1 2 3 30 30 H 1.08998 * 109.47241 * 240.00303 * 2 1 3 31 31 H 1.09004 * 109.47101 * 119.99903 * 2 1 3 32 32 H 0.97002 * 119.99823 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00420 * 35.57989 * 13 3 2 34 34 H 1.09002 * 109.47456 * 295.08006 * 17 14 13 35 35 H 1.09006 * 109.47359 * 55.08229 * 17 14 13 36 36 H 1.08994 * 109.47101 * 299.99977 * 18 17 14 37 37 H 1.08997 * 109.46903 * 59.99907 * 18 17 14 38 38 H 1.08000 * 119.97521 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.02557 * 180.25652 * 21 20 19 40 40 H 1.08997 * 109.47404 * 299.99988 * 24 23 22 41 41 H 1.09004 * 109.47332 * 59.99482 * 24 23 22 42 42 H 1.09001 * 109.47030 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.03152 * 179.97438 * 25 22 21 44 44 H 1.08001 * 119.97192 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6213 1.9760 -0.8534 5 6 3.5440 1.4436 -0.0955 6 1 4.1347 1.8933 0.6888 7 6 4.1660 0.8704 -1.1844 8 7 5.4784 0.8708 -1.2676 9 14 3.1445 0.0919 -2.5409 10 1 2.9177 -1.3422 -2.2288 11 1 1.8373 0.7898 -2.6387 12 1 3.8661 0.2091 -3.8334 13 7 1.6291 2.1057 1.2399 14 16 1.2186 3.7100 1.2240 15 8 0.8833 3.9994 2.5742 16 8 2.3190 4.3471 0.5898 17 6 -0.2562 3.7894 0.1708 18 6 -0.8095 5.2159 0.1746 19 6 -2.0344 5.2819 -0.7009 20 6 -1.9074 5.5873 -2.0434 21 6 -3.0282 5.6429 -2.8492 22 6 -4.2829 5.4038 -2.3078 23 8 -5.3876 5.4643 -3.0971 24 6 -5.1833 5.7790 -4.4759 25 6 -4.4081 5.1032 -0.9592 26 6 -3.2836 5.0423 -0.1590 27 1 -0.3634 -1.0247 0.0775 28 1 -0.3634 0.5796 0.8487 29 1 -0.3633 0.4453 -0.9262 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.9160 0.4673 -2.0335 33 1 1.5974 1.6052 2.0702 34 1 0.0088 3.5052 -0.8476 35 1 -1.0134 3.1050 0.5536 36 1 -1.0745 5.5001 1.1929 37 1 -0.0524 5.9002 -0.2082 38 1 -0.9310 5.7786 -2.4633 39 1 -2.9281 5.8774 -3.8987 40 1 -4.7100 6.7573 -4.5590 41 1 -4.5402 5.0247 -4.9294 42 1 -6.1438 5.7955 -4.9910 43 1 -5.3838 4.9170 -0.5353 44 1 -3.3806 4.8087 0.8910 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788667426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:56 Heat of formation + Delta-G solvation = -88.707869 kcal Electronic energy + Delta-G solvation = -26012.814048 eV Core-core repulsion = 22250.743861 eV Total energy + Delta-G solvation = -3762.070187 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.37581 -38.05897 -36.66563 -36.24552 -35.34335 -33.91745 -32.19996 -31.30556 -31.08804 -29.41773 -27.53209 -27.24683 -24.16758 -22.86721 -22.77377 -21.16908 -20.68455 -18.76771 -18.41172 -17.37098 -16.82561 -16.57694 -16.07488 -15.98518 -15.63676 -15.43054 -14.96068 -14.53855 -14.43428 -14.00817 -13.77080 -13.62844 -13.35032 -13.26333 -12.80512 -12.48148 -12.32114 -12.26928 -12.15366 -11.97435 -11.71873 -11.55581 -11.45618 -11.38187 -11.21689 -11.03599 -10.96280 -10.89387 -10.67585 -10.27366 -10.11812 -9.77009 -9.43914 -9.21307 -8.62254 -8.38932 -8.25922 -6.11270 -4.11115 0.75082 1.13126 1.20849 2.99268 3.18041 3.24814 3.31532 3.35621 3.53543 4.24487 4.31094 4.48867 4.59652 4.63045 4.69362 4.78915 4.82127 4.85368 5.02663 5.11960 5.12840 5.16906 5.26465 5.35826 5.50299 5.60352 5.64926 5.72233 5.83578 5.83814 5.88903 6.04560 6.12451 6.14512 6.36652 6.39575 6.44410 6.53191 6.55726 6.81753 7.12482 7.16307 7.54334 7.80520 8.47829 8.99615 9.47370 11.02314 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013065 B = 0.003614 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.630389 B = 7745.122355 C = 8770.035143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.139 4.139 3 C 0.252 3.748 4 H 0.036 0.964 5 C -0.522 4.522 6 H 0.085 0.915 7 C 0.072 3.928 8 N -0.892 5.892 9 Si 0.878 3.122 10 H -0.276 1.276 11 H -0.266 1.266 12 H -0.293 1.293 13 N -1.097 6.097 14 S 2.609 3.391 15 O -0.979 6.979 16 O -0.936 6.936 17 C -0.636 4.636 18 C -0.067 4.067 19 C -0.107 4.107 20 C -0.074 4.074 21 C -0.205 4.205 22 C 0.120 3.880 23 O -0.320 6.320 24 C 0.027 3.973 25 C -0.150 4.150 26 C -0.076 4.076 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.265 0.735 33 H 0.409 0.591 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.099 0.901 43 H 0.130 0.870 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.021 7.211 -2.877 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.178 4.178 3 C 0.146 3.854 4 H 0.053 0.947 5 C -0.561 4.561 6 H 0.103 0.897 7 C -0.130 4.130 8 N -0.529 5.529 9 Si 0.707 3.293 10 H -0.203 1.203 11 H -0.191 1.191 12 H -0.221 1.221 13 N -0.856 5.856 14 S 2.699 3.301 15 O -0.969 6.969 16 O -0.926 6.926 17 C -0.763 4.763 18 C -0.105 4.105 19 C -0.108 4.108 20 C -0.093 4.093 21 C -0.223 4.223 22 C 0.075 3.925 23 O -0.233 6.233 24 C -0.068 4.068 25 C -0.168 4.168 26 C -0.094 4.094 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.242 0.758 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.148 0.852 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.593 7.926 -2.686 22.229 hybrid contribution -0.752 -1.161 -1.304 1.901 sum -21.346 6.765 -3.990 22.745 Atomic orbital electron populations 1.21898 0.97660 1.00733 1.01108 1.22241 0.93635 0.99708 1.02193 1.18890 0.96207 0.89301 0.80965 0.94679 1.21365 0.88962 1.37795 1.07944 0.89720 1.24942 0.94800 0.95709 0.97583 1.69879 1.08026 1.44673 1.30369 0.87029 0.80477 0.79940 0.81808 1.20269 1.19118 1.22076 1.55310 1.82659 1.30122 1.17526 1.04941 0.76308 0.74050 0.74767 1.93538 1.85982 1.84013 1.33343 1.93657 1.46596 1.74478 1.77878 1.30831 1.22487 1.04383 1.18606 1.20225 0.96096 0.93530 1.00661 1.19590 0.94342 1.02585 0.94310 1.20944 0.98468 0.96973 0.92879 1.21233 0.92092 1.08259 1.00758 1.19052 0.85644 0.96798 0.91033 1.86056 1.30697 1.85654 1.20933 1.23053 1.03580 1.00369 0.79797 1.20404 0.99721 1.05842 0.90879 1.20908 0.91092 0.97611 0.99833 0.93554 0.92824 0.93483 0.92240 0.91215 0.92491 0.75774 0.84891 0.85158 0.89401 0.89509 0.85272 0.85401 0.92633 0.92564 0.88297 0.85188 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.84 37.16 0.37 -2.00 16 2 C -0.14 -2.65 5.04 -26.73 -0.13 -2.79 16 3 C 0.25 5.42 1.67 -69.08 -0.12 5.30 16 4 H 0.04 0.75 6.24 -51.93 -0.32 0.42 16 5 C -0.52 -14.22 9.42 -34.44 -0.32 -14.54 16 6 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 7 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 8 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 9 Si 0.88 20.67 24.40 -169.99 -4.15 16.52 16 10 H -0.28 -6.24 6.84 56.52 0.39 -5.85 16 11 H -0.27 -5.79 6.53 56.52 0.37 -5.42 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 N -1.10 -20.11 4.67 -5.88 -0.03 -20.14 16 14 S 2.61 45.27 5.38 -107.50 -0.58 44.69 16 15 O -0.98 -18.12 18.08 -57.54 -1.04 -19.16 16 16 O -0.94 -20.66 17.84 -57.54 -1.03 -21.69 16 17 C -0.64 -8.27 5.87 37.16 0.22 -8.05 16 18 C -0.07 -0.78 5.35 -27.88 -0.15 -0.93 16 19 C -0.11 -1.22 5.13 -104.60 -0.54 -1.75 16 20 C -0.07 -0.83 9.69 -39.60 -0.38 -1.21 16 21 C -0.20 -2.14 9.04 -39.43 -0.36 -2.49 16 22 C 0.12 1.31 6.69 -39.22 -0.26 1.05 16 23 O -0.32 -3.27 10.50 -19.44 -0.20 -3.48 16 24 C 0.03 0.18 9.81 101.05 0.99 1.17 16 25 C -0.15 -1.58 9.99 -39.43 -0.39 -1.97 16 26 C -0.08 -0.80 9.69 -39.60 -0.38 -1.18 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.70 7.60 -51.93 -0.39 0.31 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.23 3.22 -51.93 -0.17 1.07 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.41 6.65 8.80 -34.48 -0.30 6.34 16 34 H 0.13 1.73 7.54 -51.92 -0.39 1.34 16 35 H 0.13 1.41 8.14 -51.92 -0.42 0.99 16 36 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 40 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 41 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -35.36 370.43 -8.77 -44.13 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.53 Total: 7.13 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -1.56 Total: -27.46 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.75 Total: -46.27 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -2.27 Total: -44.33 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.15 Total: 16.52 kcal Atomic # 16 Polarization: 45.27 SS G_CDS: -0.58 Total: 44.69 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.36 -8.77 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788667426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.577 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds