Wall clock time and date at job start Tue Mar 31 2020 15:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 H 1.09000 * 109.47465 * 303.85671 * 3 2 1 5 5 C 1.50700 * 109.47121 * 183.85567 * 3 2 1 6 6 H 1.07998 * 120.00778 * 239.99934 * 5 3 2 7 7 C 1.37883 * 119.99868 * 60.00251 * 5 3 2 8 8 N 1.31510 * 119.99886 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00109 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47288 * 270.00449 * 9 7 5 11 11 H 1.48507 * 109.47108 * 30.00221 * 9 7 5 12 12 H 1.48501 * 109.47443 * 150.00181 * 9 7 5 13 13 N 1.46496 * 109.47099 * 63.86015 * 3 2 1 14 14 S 1.65606 * 119.99686 * 215.58278 * 13 3 2 15 15 O 1.42102 * 104.27628 * 180.02562 * 14 13 3 16 16 O 1.42090 * 104.27857 * 307.87708 * 14 13 3 17 17 C 1.81396 * 104.44849 * 63.95135 * 14 13 3 18 18 C 1.53008 * 109.47098 * 175.08164 * 17 14 13 19 19 C 1.50702 * 109.46833 * 179.97438 * 18 17 14 20 20 C 1.38261 * 119.94344 * 269.72379 * 19 18 17 21 21 C 1.38153 * 120.05337 * 179.73051 * 20 19 18 22 22 C 1.38723 * 119.94210 * 0.57035 * 21 20 19 23 23 O 1.35905 * 120.05759 * 179.68270 * 22 21 20 24 24 C 1.42896 * 116.99611 * 0.02562 * 23 22 21 25 25 C 1.38735 * 119.89147 * 359.70507 * 22 21 20 26 26 C 1.38149 * 119.94307 * 359.97438 * 25 22 21 27 27 H 1.08995 * 109.47568 * 184.32505 * 1 2 3 28 28 H 1.09003 * 109.47212 * 304.33032 * 1 2 3 29 29 H 1.08997 * 109.47121 * 64.32255 * 1 2 3 30 30 H 1.08998 * 109.47241 * 240.00303 * 2 1 3 31 31 H 1.09004 * 109.47101 * 119.99903 * 2 1 3 32 32 H 0.97002 * 119.99823 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00420 * 35.57989 * 13 3 2 34 34 H 1.09002 * 109.47456 * 295.08006 * 17 14 13 35 35 H 1.09006 * 109.47359 * 55.08229 * 17 14 13 36 36 H 1.08994 * 109.47101 * 299.99977 * 18 17 14 37 37 H 1.08997 * 109.46903 * 59.99907 * 18 17 14 38 38 H 1.08000 * 119.97521 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.02557 * 180.25652 * 21 20 19 40 40 H 1.08997 * 109.47404 * 299.99988 * 24 23 22 41 41 H 1.09004 * 109.47332 * 59.99482 * 24 23 22 42 42 H 1.09001 * 109.47030 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.03152 * 179.97438 * 25 22 21 44 44 H 1.08001 * 119.97192 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6213 1.9760 -0.8534 5 6 3.5440 1.4436 -0.0955 6 1 4.1347 1.8933 0.6888 7 6 4.1660 0.8704 -1.1844 8 7 5.4784 0.8708 -1.2676 9 14 3.1445 0.0919 -2.5409 10 1 2.9177 -1.3422 -2.2288 11 1 1.8373 0.7898 -2.6387 12 1 3.8661 0.2091 -3.8334 13 7 1.6291 2.1057 1.2399 14 16 1.2186 3.7100 1.2240 15 8 0.8833 3.9994 2.5742 16 8 2.3190 4.3471 0.5898 17 6 -0.2562 3.7894 0.1708 18 6 -0.8095 5.2159 0.1746 19 6 -2.0344 5.2819 -0.7009 20 6 -1.9074 5.5873 -2.0434 21 6 -3.0282 5.6429 -2.8492 22 6 -4.2829 5.4038 -2.3078 23 8 -5.3876 5.4643 -3.0971 24 6 -5.1833 5.7790 -4.4759 25 6 -4.4081 5.1032 -0.9592 26 6 -3.2836 5.0423 -0.1590 27 1 -0.3634 -1.0247 0.0775 28 1 -0.3634 0.5796 0.8487 29 1 -0.3633 0.4453 -0.9262 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.9160 0.4673 -2.0335 33 1 1.5974 1.6052 2.0702 34 1 0.0088 3.5052 -0.8476 35 1 -1.0134 3.1050 0.5536 36 1 -1.0745 5.5001 1.1929 37 1 -0.0524 5.9002 -0.2082 38 1 -0.9310 5.7786 -2.4633 39 1 -2.9281 5.8774 -3.8987 40 1 -4.7100 6.7573 -4.5590 41 1 -4.5402 5.0247 -4.9294 42 1 -6.1438 5.7955 -4.9910 43 1 -5.3838 4.9170 -0.5353 44 1 -3.3806 4.8087 0.8910 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788667426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:55 Heat of formation + Delta-G solvation = -115.586880 kcal Electronic energy + Delta-G solvation = -26013.979609 eV Core-core repulsion = 22250.743861 eV Total energy + Delta-G solvation = -3763.235748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.09119 -38.79213 -38.21805 -37.79633 -36.86661 -34.82184 -34.26311 -32.47348 -32.04003 -30.23243 -29.05070 -28.13198 -25.09236 -24.47918 -23.59064 -22.26878 -21.96374 -20.19493 -19.13291 -19.02117 -18.49590 -17.48835 -17.36055 -17.05254 -16.69309 -16.63104 -16.15671 -15.79491 -15.30272 -15.20577 -15.08616 -14.53135 -14.52122 -14.18918 -14.15960 -13.95743 -13.70976 -13.29101 -13.18009 -13.08816 -12.96730 -12.94082 -12.76817 -12.64198 -12.48816 -12.31504 -12.23961 -11.90558 -11.73035 -11.68301 -11.62795 -11.39806 -11.21806 -10.67374 -10.01070 -9.96174 -9.06989 -8.25613 -6.30884 -0.60363 0.38399 0.41114 1.32581 1.37999 1.48335 1.95431 2.33587 2.38597 2.71309 2.95343 3.06960 3.40166 3.74747 3.77993 3.87335 3.94274 4.02351 4.26123 4.29113 4.30574 4.38292 4.42297 4.43678 4.48825 4.52350 4.64928 4.68183 4.75462 4.78888 4.89279 5.02482 5.10163 5.11431 5.23264 5.29902 5.38476 5.41135 5.58409 5.63791 5.66042 5.80839 6.27514 6.43912 6.46552 6.75996 7.32579 8.92659 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013065 B = 0.003614 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.630389 B = 7745.122355 C = 8770.035143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.138 4.138 3 C 0.255 3.745 4 H 0.048 0.952 5 C -0.530 4.530 6 H 0.028 0.972 7 C 0.006 3.994 8 N -0.952 5.952 9 Si 0.944 3.056 10 H -0.258 1.258 11 H -0.230 1.230 12 H -0.302 1.302 13 N -1.099 6.099 14 S 2.606 3.394 15 O -0.994 6.994 16 O -0.997 6.997 17 C -0.603 4.603 18 C -0.074 4.074 19 C -0.118 4.118 20 C -0.087 4.087 21 C -0.210 4.210 22 C 0.110 3.890 23 O -0.335 6.335 24 C 0.018 3.982 25 C -0.160 4.160 26 C -0.076 4.076 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.416 0.584 34 H 0.141 0.859 35 H 0.165 0.835 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.142 0.858 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.313 6.563 -4.037 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C 0.148 3.852 4 H 0.066 0.934 5 C -0.569 4.569 6 H 0.046 0.954 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.769 3.231 10 H -0.183 1.183 11 H -0.153 1.153 12 H -0.230 1.230 13 N -0.858 5.858 14 S 2.703 3.297 15 O -0.985 6.985 16 O -0.987 6.987 17 C -0.736 4.736 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.105 4.105 21 C -0.229 4.229 22 C 0.065 3.935 23 O -0.249 6.249 24 C -0.076 4.076 25 C -0.178 4.178 26 C -0.094 4.094 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.251 0.749 34 H 0.160 0.840 35 H 0.183 0.817 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.137 0.863 43 H 0.160 0.840 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.867 7.276 -3.780 26.184 hybrid contribution 0.545 -0.830 -0.886 1.331 sum -24.322 6.446 -4.666 25.591 Atomic orbital electron populations 1.21886 0.93745 1.02772 1.02663 1.22124 0.97092 0.96953 1.01566 1.18722 0.92265 0.91688 0.82530 0.93433 1.21745 0.92379 1.36440 1.06336 0.95381 1.25950 0.95937 0.96512 1.00732 1.70080 1.10591 1.46884 1.31653 0.85953 0.79916 0.80047 0.77207 1.18347 1.15280 1.22971 1.55146 1.83357 1.30144 1.17130 1.04781 0.77078 0.73050 0.74790 1.93508 1.86343 1.83887 1.34757 1.93590 1.50948 1.75524 1.78687 1.30520 1.19267 1.06617 1.17150 1.20352 0.96545 0.92400 1.01940 1.19554 0.94277 1.03809 0.94284 1.21140 0.99037 0.97169 0.93145 1.21428 0.91790 1.08044 1.01635 1.19292 0.86038 0.96649 0.91530 1.86040 1.30756 1.85649 1.22455 1.23315 1.05101 1.00918 0.78255 1.20662 1.00449 1.05744 0.90973 1.21147 0.90579 0.96880 1.00831 0.91455 0.90837 0.92350 0.93492 0.91423 0.92592 0.74938 0.84037 0.81744 0.87950 0.89502 0.84765 0.83821 0.91840 0.92056 0.86317 0.83975 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.84 71.98 0.71 -3.14 16 2 C -0.14 -4.91 5.04 30.59 0.15 -4.75 16 3 C 0.25 10.67 1.67 44.25 0.07 10.75 16 4 H 0.05 1.89 6.24 -2.39 -0.01 1.88 16 5 C -0.53 -29.92 9.42 25.60 0.24 -29.68 16 6 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.33 5.45 84.66 0.46 0.79 16 8 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 9 Si 0.94 42.08 24.40 68.60 1.67 43.76 16 10 H -0.26 -10.69 6.84 99.48 0.68 -10.01 16 11 H -0.23 -8.80 6.53 99.48 0.65 -8.15 16 12 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 13 N -1.10 -39.53 4.67 -172.53 -0.81 -40.34 16 14 S 2.61 88.74 5.38 -56.49 -0.30 88.43 16 15 O -0.99 -36.14 18.08 -127.65 -2.31 -38.45 16 16 O -1.00 -45.45 17.84 -127.65 -2.28 -47.72 16 17 C -0.60 -13.63 5.87 71.98 0.42 -13.21 16 18 C -0.07 -1.51 5.35 29.85 0.16 -1.35 16 19 C -0.12 -2.31 5.13 -19.85 -0.10 -2.41 16 20 C -0.09 -1.71 9.69 22.26 0.22 -1.49 16 21 C -0.21 -3.86 9.04 22.37 0.20 -3.66 16 22 C 0.11 2.14 6.69 22.50 0.15 2.29 16 23 O -0.33 -6.07 10.50 -92.48 -0.97 -7.04 16 24 C 0.02 0.19 9.81 113.37 1.11 1.31 16 25 C -0.16 -2.90 9.99 22.37 0.22 -2.68 16 26 C -0.08 -1.33 9.69 22.25 0.22 -1.12 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.55 7.60 -2.39 -0.02 1.53 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.79 3.22 -2.39 -0.01 1.78 16 31 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.42 13.31 8.80 -96.74 -0.85 12.45 16 34 H 0.14 3.13 7.54 -2.39 -0.02 3.11 16 35 H 0.16 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.10 1.81 8.08 -2.39 -0.02 1.79 16 37 H 0.09 1.78 8.08 -2.39 -0.02 1.76 16 38 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.14 2.03 6.30 -2.91 -0.02 2.01 16 40 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 41 H 0.06 0.58 7.66 -2.38 -0.02 0.56 16 42 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -81.48 370.43 -0.38 -81.87 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.07 Total: 27.81 kcal Atomic # 6 Polarization: -52.60 SS G_CDS: 4.24 Total: -48.36 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -0.51 Total: -100.28 kcal Atomic # 8 Polarization: -87.66 SS G_CDS: -5.56 Total: -93.22 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.67 Total: 43.76 kcal Atomic # 16 Polarization: 88.74 SS G_CDS: -0.30 Total: 88.43 kcal Total: -81.48 -0.38 -81.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788667426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.721 kcal (2) G-P(sol) polarization free energy of solvation -81.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds