Wall clock time and date at job start Tue Mar 31 2020 15:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47289 * 2 1 4 4 H 1.09004 * 109.47038 * 178.48068 * 3 2 1 5 5 C 1.50698 * 109.47117 * 298.47799 * 3 2 1 6 6 H 1.08002 * 119.99878 * 119.99687 * 5 3 2 7 7 C 1.37871 * 120.00527 * 300.00066 * 5 3 2 8 8 N 1.31516 * 120.00025 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00318 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47048 * 89.99773 * 9 7 5 11 11 H 1.48503 * 109.47210 * 209.99877 * 9 7 5 12 12 H 1.48499 * 109.46774 * 329.99910 * 9 7 5 13 13 N 1.46496 * 109.47224 * 58.48022 * 3 2 1 14 14 S 1.65604 * 120.00132 * 96.37962 * 13 3 2 15 15 O 1.42106 * 104.27628 * 308.98988 * 14 13 3 16 16 O 1.42097 * 104.27754 * 181.12803 * 14 13 3 17 17 C 1.81399 * 104.44500 * 65.05692 * 14 13 3 18 18 C 1.53002 * 109.46890 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.46898 * 180.02562 * 18 17 14 20 20 C 1.38269 * 119.94512 * 269.72267 * 19 18 17 21 21 C 1.38138 * 120.05601 * 179.72756 * 20 19 18 22 22 C 1.38732 * 119.94594 * 0.57213 * 21 20 19 23 23 O 1.35899 * 120.05991 * 179.68777 * 22 21 20 24 24 C 1.42903 * 116.99801 * 0.02562 * 23 22 21 25 25 C 1.38733 * 119.88757 * 359.70454 * 22 21 20 26 26 C 1.38148 * 119.94465 * 359.97438 * 25 22 21 27 27 H 1.08997 * 109.47300 * 175.72278 * 1 2 3 28 28 H 1.09009 * 109.46616 * 295.72041 * 1 2 3 29 29 H 1.09002 * 109.47493 * 55.71934 * 1 2 3 30 30 H 1.09007 * 109.46938 * 240.00242 * 2 1 3 31 31 H 1.08993 * 109.47638 * 120.00251 * 2 1 3 32 32 H 0.96996 * 120.00590 * 179.97438 * 8 7 5 33 33 H 0.97005 * 119.99825 * 276.39052 * 13 3 2 34 34 H 1.08999 * 109.47250 * 60.00488 * 17 14 13 35 35 H 1.08997 * 109.47322 * 299.99694 * 17 14 13 36 36 H 1.08999 * 109.47576 * 60.00107 * 18 17 14 37 37 H 1.08997 * 109.46829 * 299.99924 * 18 17 14 38 38 H 1.08003 * 119.97110 * 359.97438 * 20 19 18 39 39 H 1.07998 * 120.02741 * 180.25330 * 21 20 19 40 40 H 1.09003 * 109.47140 * 180.02562 * 24 23 22 41 41 H 1.08992 * 109.47268 * 300.01115 * 24 23 22 42 42 H 1.09000 * 109.46444 * 60.01191 * 24 23 22 43 43 H 1.07994 * 120.03150 * 179.97438 * 25 22 21 44 44 H 1.07998 * 119.97546 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 0.0272 5 6 1.5687 2.1420 -1.2489 6 1 0.9456 3.0208 -1.1731 7 6 1.9329 1.6600 -2.4882 8 7 2.6921 0.5900 -2.5805 9 14 1.3481 2.5266 -4.0362 10 1 2.3357 3.5651 -4.4252 11 1 1.2109 1.5375 -5.1354 12 1 0.0329 3.1660 -3.7786 13 7 1.5220 2.1436 1.1774 14 16 2.4510 2.2673 2.5427 15 8 2.8685 0.9344 2.8045 16 8 1.6291 2.9718 3.4632 17 6 3.8626 3.2890 2.0386 18 6 4.8062 3.4776 3.2281 19 6 5.9786 4.3269 2.8095 20 6 7.1180 3.7292 2.3033 21 6 8.1919 4.5059 1.9136 22 6 8.1310 5.8860 2.0415 23 8 9.1885 6.6518 1.6648 24 6 10.3311 5.9693 1.1445 25 6 6.9888 6.4829 2.5550 26 6 5.9150 5.7023 2.9371 27 1 -0.3634 -1.0248 -0.0766 28 1 -0.3633 0.4460 0.9259 29 1 -0.3634 0.5788 -0.8491 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.9480 0.2506 -3.4524 33 1 0.6348 2.5353 1.1573 34 1 3.5049 4.2615 1.7004 35 1 4.3965 2.7957 1.2265 36 1 5.1640 2.5050 3.5660 37 1 4.2725 3.9707 4.0406 38 1 7.1670 2.6545 2.2088 39 1 9.0801 4.0388 1.5145 40 1 11.1007 6.6958 0.8835 41 1 10.7193 5.2840 1.8979 42 1 10.0449 5.4075 0.2553 43 1 6.9391 7.5570 2.6560 44 1 5.0254 6.1665 3.3366 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788667427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:59 Heat of formation + Delta-G solvation = -121.026744 kcal Electronic energy + Delta-G solvation = -25809.845079 eV Core-core repulsion = 22046.373440 eV Total energy + Delta-G solvation = -3763.471639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10180 -38.79843 -38.18389 -37.64373 -36.88434 -34.81443 -34.06236 -32.05742 -32.00983 -30.22912 -28.22874 -28.13403 -25.37656 -25.05370 -23.60928 -22.00642 -21.77420 -19.99891 -19.13998 -18.98441 -18.01178 -17.38302 -17.32755 -17.01812 -16.64272 -16.51145 -16.18011 -15.55299 -15.29438 -15.12461 -14.88652 -14.57811 -14.49098 -14.20586 -14.14393 -14.01140 -13.38104 -13.25320 -13.10489 -12.98797 -12.97401 -12.80167 -12.77717 -12.59205 -12.41028 -12.32583 -12.13844 -11.91702 -11.77499 -11.70649 -11.56132 -11.45598 -10.94345 -10.50276 -9.97765 -9.91030 -9.07735 -8.07966 -6.20551 -0.55824 0.36864 0.40062 1.46045 1.49660 1.57122 1.99120 2.37156 2.47312 2.70229 2.94250 3.21856 3.37453 3.75024 3.76476 3.89270 3.93886 4.01245 4.27239 4.37426 4.40867 4.43828 4.50595 4.52822 4.66402 4.70232 4.74232 4.77824 4.81116 4.90455 4.95969 5.08378 5.27524 5.28280 5.36698 5.49990 5.63816 5.64475 5.72340 5.74563 5.79304 6.13323 6.18206 6.42519 6.49797 6.90286 7.48248 8.96441 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011070 B = 0.003629 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.862502 B = 7713.101877 C = 9389.507121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.136 4.136 3 C 0.284 3.716 4 H 0.025 0.975 5 C -0.527 4.527 6 H 0.068 0.932 7 C 0.024 3.976 8 N -0.913 5.913 9 Si 0.951 3.049 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.268 1.268 13 N -1.105 6.105 14 S 2.618 3.382 15 O -0.994 6.994 16 O -0.995 6.995 17 C -0.607 4.607 18 C -0.072 4.072 19 C -0.120 4.120 20 C -0.087 4.087 21 C -0.210 4.210 22 C 0.109 3.891 23 O -0.335 6.335 24 C 0.018 3.982 25 C -0.161 4.161 26 C -0.080 4.080 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.414 0.586 34 H 0.149 0.851 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.120 0.880 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.143 0.857 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.088 9.600 8.305 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.176 4.176 3 C 0.178 3.822 4 H 0.043 0.957 5 C -0.566 4.566 6 H 0.086 0.914 7 C -0.177 4.177 8 N -0.552 5.552 9 Si 0.778 3.222 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.192 1.192 13 N -0.864 5.864 14 S 2.714 3.286 15 O -0.985 6.985 16 O -0.985 6.985 17 C -0.738 4.738 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.105 4.105 21 C -0.229 4.229 22 C 0.064 3.936 23 O -0.249 6.249 24 C -0.076 4.076 25 C -0.179 4.179 26 C -0.098 4.098 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.248 0.752 34 H 0.168 0.832 35 H 0.151 0.849 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.153 0.847 39 H 0.163 0.837 40 H 0.138 0.862 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.160 0.840 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.161 9.190 9.018 17.039 hybrid contribution -0.064 0.339 -1.735 1.769 sum 11.097 9.529 7.282 16.339 Atomic orbital electron populations 1.21483 0.96182 0.99628 1.00830 1.21895 0.96458 0.99159 1.00123 1.18262 0.92760 0.88839 0.82351 0.95741 1.21526 1.32194 1.12259 0.90626 0.91401 1.25541 0.95150 0.95443 1.01536 1.69982 1.36797 1.23353 1.25024 0.85660 0.78883 0.78171 0.79504 1.20516 1.21487 1.19228 1.55395 1.29103 1.70762 1.31094 1.04418 0.76148 0.74965 0.73042 1.93536 1.84266 1.36210 1.84451 1.93508 1.66405 1.76148 1.62454 1.30504 1.17128 1.16982 1.09223 1.20364 0.93970 1.01603 0.95110 1.19621 0.95274 0.94242 1.03028 1.21142 0.92400 1.00729 0.96211 1.21439 1.01606 0.92629 1.07226 1.19278 0.88496 0.90127 0.95672 1.86034 1.24457 1.36429 1.77958 1.23324 0.85917 0.99666 0.98702 1.20658 0.92001 1.01305 1.03965 1.21154 0.98421 0.92591 0.97595 0.94221 0.93655 0.93036 0.90841 0.95397 0.92776 0.75219 0.83244 0.84928 0.88988 0.88006 0.84660 0.83691 0.86196 0.91646 0.92259 0.83951 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 9.51 71.98 0.68 -4.46 16 2 C -0.14 -6.40 5.69 30.59 0.17 -6.22 16 3 C 0.28 12.89 2.36 44.25 0.10 13.00 16 4 H 0.02 1.18 7.17 -2.38 -0.02 1.17 16 5 C -0.53 -25.52 7.51 25.60 0.19 -25.33 16 6 H 0.07 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.02 1.19 5.30 84.65 0.45 1.63 16 8 N -0.91 -48.44 11.31 21.45 0.24 -48.19 16 9 Si 0.95 40.39 29.54 68.60 2.03 42.41 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 13 N -1.10 -41.87 4.64 -172.52 -0.80 -42.67 16 14 S 2.62 89.29 5.37 -56.49 -0.30 88.99 16 15 O -0.99 -40.57 17.28 -127.65 -2.21 -42.78 16 16 O -0.99 -36.35 18.08 -127.65 -2.31 -38.66 16 17 C -0.61 -16.54 5.95 71.98 0.43 -16.12 16 18 C -0.07 -1.68 5.35 29.85 0.16 -1.52 16 19 C -0.12 -2.81 5.13 -19.85 -0.10 -2.91 16 20 C -0.09 -2.01 9.69 22.25 0.22 -1.79 16 21 C -0.21 -4.57 9.04 22.36 0.20 -4.36 16 22 C 0.11 2.50 6.69 22.51 0.15 2.65 16 23 O -0.33 -7.03 10.50 -92.41 -0.97 -8.00 16 24 C 0.02 0.24 9.81 113.37 1.11 1.35 16 25 C -0.16 -3.51 9.99 22.37 0.22 -3.29 16 26 C -0.08 -1.71 9.69 22.26 0.22 -1.49 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.72 7.59 -2.38 -0.02 1.70 16 29 H 0.05 2.22 7.12 -2.39 -0.02 2.20 16 30 H 0.07 3.81 6.03 -2.38 -0.01 3.80 16 31 H 0.03 1.30 7.60 -2.39 -0.02 1.28 16 32 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 33 H 0.41 14.56 8.64 -96.74 -0.84 13.72 16 34 H 0.15 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.13 3.84 7.46 -2.39 -0.02 3.83 16 36 H 0.09 2.03 8.08 -2.39 -0.02 2.01 16 37 H 0.10 2.02 8.08 -2.39 -0.02 2.00 16 38 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 39 H 0.15 2.48 6.30 -2.91 -0.02 2.46 16 40 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 42 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 43 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 44 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -65.49 373.87 0.06 -65.44 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.17 Total: 32.34 kcal Atomic # 6 Polarization: -53.08 SS G_CDS: 4.21 Total: -48.87 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -0.56 Total: -90.86 kcal Atomic # 8 Polarization: -83.96 SS G_CDS: -5.48 Total: -89.44 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 16 Polarization: 89.29 SS G_CDS: -0.30 Total: 88.99 kcal Total: -65.49 0.06 -65.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788667427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.591 kcal (2) G-P(sol) polarization free energy of solvation -65.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds