Wall clock time and date at job start Tue Mar 31 2020 15:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35901 * 117.00084 * 2 1 4 4 C 1.38751 * 120.05620 * 359.72367 * 3 2 1 5 5 C 1.38122 * 119.94446 * 179.70085 * 4 3 2 6 6 C 1.38292 * 120.05622 * 0.59987 * 5 4 3 7 7 C 1.38240 * 120.10948 * 359.67856 * 6 5 4 8 8 S 1.76203 * 119.97148 * 180.02562 * 7 6 5 9 9 O 1.42095 * 106.39867 * 23.51687 * 8 7 6 10 10 O 1.42104 * 106.40115 * 156.43637 * 8 7 6 11 11 N 1.65601 * 107.21833 * 269.97461 * 8 7 6 12 12 C 1.46496 * 120.00164 * 270.00403 * 11 8 7 13 13 C 1.50692 * 109.47640 * 94.19706 * 12 11 8 14 14 H 1.08002 * 119.99900 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00294 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99962 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00023 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47213 * 90.00018 * 17 15 13 19 19 H 1.48507 * 109.46971 * 209.99751 * 17 15 13 20 20 H 1.48498 * 109.47226 * 329.99722 * 17 15 13 21 21 C 1.46500 * 119.99848 * 90.00046 * 11 8 7 22 22 C 1.53004 * 109.47217 * 93.28657 * 21 11 8 23 23 C 1.53004 * 109.46499 * 65.35649 * 22 21 11 24 24 C 1.53003 * 109.47065 * 185.35287 * 22 21 11 25 25 C 1.38164 * 120.05816 * 0.02562 * 7 6 5 26 26 H 1.09001 * 109.47121 * 299.99923 * 1 2 3 27 27 H 1.09003 * 109.47346 * 59.99946 * 1 2 3 28 28 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.02758 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.97268 * 180.29804 * 5 4 3 31 31 H 1.07994 * 119.94650 * 179.69812 * 6 5 4 32 32 H 1.09001 * 109.46505 * 214.19999 * 12 11 8 33 33 H 1.09006 * 109.46978 * 334.19058 * 12 11 8 34 34 H 0.96996 * 119.99849 * 180.02562 * 16 15 13 35 35 H 1.08995 * 109.47386 * 213.29341 * 21 11 8 36 36 H 1.09011 * 109.46824 * 333.29081 * 21 11 8 37 37 H 1.08994 * 109.47237 * 305.35813 * 22 21 11 38 38 H 1.09004 * 109.46808 * 292.43910 * 23 22 21 39 39 H 1.08997 * 109.47304 * 52.43943 * 23 22 21 40 40 H 1.09001 * 109.46545 * 172.44120 * 23 22 21 41 41 H 1.08995 * 109.46586 * 60.00809 * 24 22 21 42 42 H 1.08994 * 109.46645 * 180.02562 * 24 22 21 43 43 H 1.08994 * 109.47019 * 300.00510 * 24 22 21 44 44 H 1.07999 * 120.03216 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6047 0.0005 6 6 3.3019 3.6758 0.0000 7 6 4.0559 2.5171 -0.0001 8 16 5.8154 2.6119 0.0000 9 8 6.1487 3.8816 0.5440 10 8 6.2833 1.3857 0.5449 11 7 6.3050 2.6377 -1.5818 12 6 6.5897 1.3823 -2.2810 13 6 5.3598 0.9321 -3.0263 14 1 4.4563 1.5225 -2.9838 15 6 5.3880 -0.2327 -3.7634 16 7 6.4886 -0.9508 -3.8164 17 14 3.8635 -0.7903 -4.6878 18 1 3.8775 -0.2163 -6.0573 19 1 3.8506 -2.2728 -4.7725 20 1 2.6506 -0.3250 -3.9685 21 6 6.4533 3.9160 -2.2819 22 6 7.9019 4.3950 -2.1677 23 6 8.8201 3.4248 -2.9138 24 6 8.0275 5.7906 -2.7822 25 6 3.4311 1.2849 -0.0002 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2127 2.3203 -0.0107 30 1 1.3339 4.5113 0.0008 31 1 3.7922 4.6380 -0.0001 32 1 7.4060 1.5366 -2.9867 33 1 6.8751 0.6195 -1.5565 34 1 6.5085 -1.7701 -4.3352 35 1 6.1951 3.7868 -3.3329 36 1 5.7897 4.6552 -1.8330 37 1 8.1902 4.4332 -1.1173 38 1 8.8335 2.4660 -2.3954 39 1 8.4509 3.2835 -3.9295 40 1 9.8299 3.8336 -2.9477 41 1 7.3734 6.4817 -2.2507 42 1 9.0596 6.1316 -2.7012 43 1 7.7391 5.7524 -3.8326 44 1 4.0206 0.3799 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795093989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:36 Heat of formation + Delta-G solvation = -91.311914 kcal Electronic energy + Delta-G solvation = -27337.480029 eV Core-core repulsion = 23575.296922 eV Total energy + Delta-G solvation = -3762.183107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.95797 -37.28488 -37.13888 -36.60024 -35.22052 -33.64417 -32.10458 -31.15211 -30.12128 -27.65860 -27.28544 -26.67269 -24.90931 -22.96491 -22.33121 -22.08381 -19.95585 -18.94619 -17.73468 -16.78193 -16.42854 -16.27390 -15.98081 -15.71004 -15.68053 -15.50160 -14.50027 -14.44535 -13.89829 -13.74575 -13.49175 -13.30213 -12.82923 -12.60419 -12.46529 -12.34282 -12.05615 -11.88817 -11.74169 -11.52627 -11.48415 -11.29208 -11.20183 -11.14383 -11.10592 -11.09252 -10.85183 -10.56959 -10.41152 -10.18420 -10.13002 -9.94469 -9.68950 -9.17217 -8.44938 -8.13172 -7.98555 -6.08323 -4.13701 0.90078 1.19215 1.54456 3.26510 3.32530 3.33960 3.37080 3.51069 3.84506 4.35764 4.40049 4.75706 4.91732 4.97469 5.06613 5.10372 5.23652 5.26584 5.27721 5.33539 5.40846 5.45255 5.57254 5.64782 5.69480 5.98463 6.03382 6.08918 6.21604 6.24296 6.27893 6.31665 6.36122 6.40991 6.46388 6.60553 6.69796 6.76682 6.89775 7.37352 7.45413 7.47336 7.65668 7.88903 8.18194 8.90755 9.52213 10.99523 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009641 B = 0.006630 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.474999 B = 4222.056932 C = 6087.244376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.104 3.896 4 C -0.164 4.164 5 C -0.109 4.109 6 C -0.064 4.064 7 C -0.627 4.627 8 S 2.688 3.312 9 O -0.974 6.974 10 O -0.955 6.955 11 N -0.976 5.976 12 C 0.236 3.764 13 C -0.539 4.539 14 H 0.061 0.939 15 C 0.068 3.932 16 N -0.888 5.888 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.137 3.863 22 C -0.116 4.116 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.025 4.025 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 9.191 4.809 12.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.058 3.942 4 C -0.183 4.183 5 C -0.128 4.128 6 C -0.084 4.084 7 C -0.711 4.711 8 S 2.777 3.223 9 O -0.965 6.965 10 O -0.945 6.945 11 N -0.815 5.815 12 C 0.114 3.886 13 C -0.578 4.578 14 H 0.079 0.921 15 C -0.135 4.135 16 N -0.527 5.527 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.010 3.990 22 C -0.136 4.136 23 C -0.204 4.204 24 C -0.200 4.200 25 C -0.045 4.045 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.919 8.822 5.451 12.466 hybrid contribution -2.059 -0.373 -1.066 2.348 sum -8.977 8.449 4.385 13.084 Atomic orbital electron populations 1.23046 0.78824 1.03959 1.00998 1.86140 1.20980 1.26541 1.88829 1.19062 0.92490 0.84313 0.98312 1.21417 0.99913 0.92635 1.04330 1.20948 0.94576 0.96988 1.00274 1.20764 0.94056 0.97023 0.96515 1.31202 1.28369 0.98140 1.13405 1.02071 0.73614 0.73147 0.73491 1.93513 1.82684 1.42714 1.77554 1.93559 1.78739 1.45307 1.76933 1.57358 1.80107 1.13635 1.30409 1.19474 0.97418 0.78317 0.93346 1.21552 0.98288 1.07525 1.30433 0.92116 1.24882 0.95974 0.96275 0.96418 1.69921 1.26573 1.15328 1.40860 0.86646 0.83663 0.77969 0.80121 1.20719 1.21088 1.19822 1.21192 0.95128 0.83560 0.99069 1.21593 0.96533 0.94940 1.00573 1.21945 0.97800 0.99801 1.00858 1.21761 1.01291 0.96220 1.00733 1.20225 0.91783 0.97720 0.94767 0.92869 0.92763 0.88217 0.85289 0.85324 0.84563 0.92714 0.93042 0.92644 0.89827 0.91748 0.90962 0.91404 0.92341 0.93783 0.92818 0.92900 0.92684 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -5.12 10.50 -19.43 -0.20 -5.33 16 3 C 0.10 1.80 6.69 -39.21 -0.26 1.53 16 4 C -0.16 -2.32 9.04 -39.43 -0.36 -2.68 16 5 C -0.11 -1.49 10.04 -39.60 -0.40 -1.89 16 6 C -0.06 -1.01 9.52 -39.56 -0.38 -1.39 16 7 C -0.63 -11.69 5.97 -39.61 -0.24 -11.93 16 8 S 2.69 53.98 5.65 -107.50 -0.61 53.37 16 9 O -0.97 -19.26 16.15 -57.17 -0.92 -20.19 16 10 O -0.96 -22.06 15.84 -57.17 -0.91 -22.96 16 11 N -0.98 -19.70 2.67 -115.66 -0.31 -20.01 16 12 C 0.24 5.66 4.70 -5.20 -0.02 5.64 16 13 C -0.54 -13.98 9.39 -34.45 -0.32 -14.31 16 14 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 17 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.14 2.33 4.83 -4.04 -0.02 2.31 16 22 C -0.12 -1.80 3.12 -90.61 -0.28 -2.08 16 23 C -0.15 -2.36 7.84 37.16 0.29 -2.07 16 24 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 25 C -0.03 -0.49 9.46 -39.43 -0.37 -0.87 16 26 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 27 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.13 1.39 6.30 -52.48 -0.33 1.06 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.14 1.88 7.61 -52.49 -0.40 1.48 16 32 H 0.06 1.33 5.48 -51.93 -0.28 1.04 16 33 H 0.05 1.37 6.93 -51.93 -0.36 1.01 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 36 H 0.06 0.97 7.67 -51.92 -0.40 0.57 16 37 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 38 H 0.07 1.23 6.22 -51.93 -0.32 0.91 16 39 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 40 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.15 3.17 7.62 -52.49 -0.40 2.77 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -31.81 372.20 -9.38 -41.18 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.63 Total: 2.79 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -1.13 Total: -26.15 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.43 Total: -44.38 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -2.03 Total: -48.48 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 53.98 SS G_CDS: -0.61 Total: 53.37 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.81 -9.38 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795093989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.129 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds