Wall clock time and date at job start Tue Mar 31 2020 15:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35901 * 117.00084 * 2 1 4 4 C 1.38751 * 120.05620 * 359.72367 * 3 2 1 5 5 C 1.38122 * 119.94446 * 179.70085 * 4 3 2 6 6 C 1.38292 * 120.05622 * 0.59987 * 5 4 3 7 7 C 1.38240 * 120.10948 * 359.67856 * 6 5 4 8 8 S 1.76203 * 119.97148 * 180.02562 * 7 6 5 9 9 O 1.42095 * 106.39867 * 23.51687 * 8 7 6 10 10 O 1.42104 * 106.40115 * 156.43637 * 8 7 6 11 11 N 1.65601 * 107.21833 * 269.97461 * 8 7 6 12 12 C 1.46496 * 120.00164 * 270.00403 * 11 8 7 13 13 C 1.50692 * 109.47640 * 94.19706 * 12 11 8 14 14 H 1.08002 * 119.99900 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00294 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99962 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00023 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47213 * 90.00018 * 17 15 13 19 19 H 1.48507 * 109.46971 * 209.99751 * 17 15 13 20 20 H 1.48498 * 109.47226 * 329.99722 * 17 15 13 21 21 C 1.46500 * 119.99848 * 90.00046 * 11 8 7 22 22 C 1.53004 * 109.47217 * 93.28657 * 21 11 8 23 23 C 1.53004 * 109.46499 * 65.35649 * 22 21 11 24 24 C 1.53003 * 109.47065 * 185.35287 * 22 21 11 25 25 C 1.38164 * 120.05816 * 0.02562 * 7 6 5 26 26 H 1.09001 * 109.47121 * 299.99923 * 1 2 3 27 27 H 1.09003 * 109.47346 * 59.99946 * 1 2 3 28 28 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.02758 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.97268 * 180.29804 * 5 4 3 31 31 H 1.07994 * 119.94650 * 179.69812 * 6 5 4 32 32 H 1.09001 * 109.46505 * 214.19999 * 12 11 8 33 33 H 1.09006 * 109.46978 * 334.19058 * 12 11 8 34 34 H 0.96996 * 119.99849 * 180.02562 * 16 15 13 35 35 H 1.08995 * 109.47386 * 213.29341 * 21 11 8 36 36 H 1.09011 * 109.46824 * 333.29081 * 21 11 8 37 37 H 1.08994 * 109.47237 * 305.35813 * 22 21 11 38 38 H 1.09004 * 109.46808 * 292.43910 * 23 22 21 39 39 H 1.08997 * 109.47304 * 52.43943 * 23 22 21 40 40 H 1.09001 * 109.46545 * 172.44120 * 23 22 21 41 41 H 1.08995 * 109.46586 * 60.00809 * 24 22 21 42 42 H 1.08994 * 109.46645 * 180.02562 * 24 22 21 43 43 H 1.08994 * 109.47019 * 300.00510 * 24 22 21 44 44 H 1.07999 * 120.03216 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6047 0.0005 6 6 3.3019 3.6758 0.0000 7 6 4.0559 2.5171 -0.0001 8 16 5.8154 2.6119 0.0000 9 8 6.1487 3.8816 0.5440 10 8 6.2833 1.3857 0.5449 11 7 6.3050 2.6377 -1.5818 12 6 6.5897 1.3823 -2.2810 13 6 5.3598 0.9321 -3.0263 14 1 4.4563 1.5225 -2.9838 15 6 5.3880 -0.2327 -3.7634 16 7 6.4886 -0.9508 -3.8164 17 14 3.8635 -0.7903 -4.6878 18 1 3.8775 -0.2163 -6.0573 19 1 3.8506 -2.2728 -4.7725 20 1 2.6506 -0.3250 -3.9685 21 6 6.4533 3.9160 -2.2819 22 6 7.9019 4.3950 -2.1677 23 6 8.8201 3.4248 -2.9138 24 6 8.0275 5.7906 -2.7822 25 6 3.4311 1.2849 -0.0002 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2127 2.3203 -0.0107 30 1 1.3339 4.5113 0.0008 31 1 3.7922 4.6380 -0.0001 32 1 7.4060 1.5366 -2.9867 33 1 6.8751 0.6195 -1.5565 34 1 6.5085 -1.7701 -4.3352 35 1 6.1951 3.7868 -3.3329 36 1 5.7897 4.6552 -1.8330 37 1 8.1902 4.4332 -1.1173 38 1 8.8335 2.4660 -2.3954 39 1 8.4509 3.2835 -3.9295 40 1 9.8299 3.8336 -2.9477 41 1 7.3734 6.4817 -2.2507 42 1 9.0596 6.1316 -2.7012 43 1 7.7391 5.7524 -3.8326 44 1 4.0206 0.3799 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795093989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:35 Heat of formation + Delta-G solvation = -112.113166 kcal Electronic energy + Delta-G solvation = -27338.382039 eV Core-core repulsion = 23575.296922 eV Total energy + Delta-G solvation = -3763.085117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.13315 -38.63535 -38.44524 -38.25654 -36.89720 -35.34827 -33.90589 -32.37530 -31.31579 -29.46643 -28.21969 -27.90186 -26.50811 -24.34165 -23.92383 -23.45865 -21.25179 -20.27628 -19.22166 -18.62764 -18.19650 -17.58853 -17.25573 -17.10052 -16.95645 -16.72498 -16.33439 -15.85354 -15.32758 -14.94810 -14.80303 -14.61262 -14.23738 -14.17224 -13.80564 -13.66000 -13.58494 -13.21504 -13.18712 -13.04315 -12.94741 -12.87059 -12.79953 -12.68171 -12.48047 -12.34931 -12.23683 -12.18519 -11.85854 -11.74223 -11.62496 -11.47967 -11.38897 -10.54616 -10.40339 -9.66669 -9.35634 -8.15786 -6.27202 -0.56491 -0.20181 0.31477 1.36990 1.39606 1.48570 2.02151 2.27126 2.40583 2.51608 2.81332 3.16168 3.39209 3.71593 3.90077 3.93204 4.09933 4.10958 4.17388 4.23961 4.34893 4.36605 4.38335 4.44193 4.65970 4.76747 4.79113 4.88447 4.96897 5.01907 5.04264 5.11541 5.14569 5.17851 5.19839 5.28492 5.38770 5.49820 5.56632 5.58334 5.61165 5.77488 5.97980 6.13708 6.35472 6.83677 7.41498 8.91884 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009641 B = 0.006630 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.474999 B = 4222.056932 C = 6087.244376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.343 6.343 3 C 0.092 3.908 4 C -0.151 4.151 5 C -0.094 4.094 6 C -0.071 4.071 7 C -0.638 4.638 8 S 2.694 3.306 9 O -0.973 6.973 10 O -0.999 6.999 11 N -0.980 5.980 12 C 0.253 3.747 13 C -0.537 4.537 14 H 0.062 0.938 15 C 0.016 3.984 16 N -0.924 5.924 17 Si 0.948 3.052 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.271 1.271 21 C 0.127 3.873 22 C -0.117 4.117 23 C -0.145 4.145 24 C -0.136 4.136 25 C -0.068 4.068 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.116 0.884 29 H 0.172 0.828 30 H 0.180 0.820 31 H 0.158 0.842 32 H 0.049 0.951 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 12.079 4.267 16.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.257 6.257 3 C 0.046 3.954 4 C -0.170 4.170 5 C -0.112 4.112 6 C -0.090 4.090 7 C -0.726 4.726 8 S 2.786 3.214 9 O -0.963 6.963 10 O -0.990 6.990 11 N -0.818 5.818 12 C 0.130 3.870 13 C -0.576 4.576 14 H 0.081 0.919 15 C -0.184 4.184 16 N -0.564 5.564 17 Si 0.774 3.226 18 H -0.194 1.194 19 H -0.212 1.212 20 H -0.195 1.195 21 C 0.002 3.998 22 C -0.137 4.137 23 C -0.202 4.202 24 C -0.193 4.193 25 C -0.088 4.088 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.134 0.866 29 H 0.189 0.811 30 H 0.197 0.803 31 H 0.176 0.824 32 H 0.067 0.933 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.070 11.739 4.908 16.226 hybrid contribution -1.171 -1.240 -0.818 1.892 sum -11.241 10.498 4.090 15.916 Atomic orbital electron populations 1.23443 0.75936 1.05857 1.02743 1.86103 1.24067 1.26730 1.88832 1.19188 0.91837 0.85901 0.98428 1.21921 1.01879 0.91426 1.01758 1.21535 0.93780 0.98688 0.97223 1.21171 0.95406 0.96568 0.95862 1.30750 1.26775 0.99239 1.15849 1.01564 0.74393 0.72297 0.73120 1.93495 1.83348 1.42031 1.77434 1.93499 1.80330 1.47257 1.77873 1.57213 1.80760 1.13535 1.30253 1.19000 0.96674 0.79220 0.92127 1.21802 0.98712 1.07413 1.29717 0.91935 1.25662 0.98608 0.96565 0.97550 1.70042 1.28502 1.15848 1.42027 0.85703 0.80295 0.77367 0.79284 1.19408 1.21172 1.19539 1.21509 0.96834 0.82499 0.98932 1.21605 0.95209 0.96748 1.00134 1.21901 0.99456 0.98715 1.00116 1.21720 1.02620 0.93931 1.01075 1.20076 0.93382 0.96877 0.98467 0.90399 0.91484 0.86568 0.81062 0.80317 0.82412 0.93323 0.96777 0.92652 0.89932 0.89249 0.92065 0.94538 0.92865 0.91565 0.91505 0.91547 0.91809 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -11.08 10.50 -92.43 -0.97 -12.05 16 3 C 0.09 3.12 6.69 22.51 0.15 3.27 16 4 C -0.15 -3.68 9.04 22.37 0.20 -3.48 16 5 C -0.09 -2.12 10.04 22.26 0.22 -1.89 16 6 C -0.07 -2.04 9.52 22.28 0.21 -1.83 16 7 C -0.64 -24.01 5.97 22.25 0.13 -23.88 16 8 S 2.69 112.65 5.65 -56.49 -0.32 112.33 16 9 O -0.97 -38.51 16.15 -128.00 -2.07 -40.58 16 10 O -1.00 -50.02 15.84 -128.00 -2.03 -52.05 16 11 N -0.98 -41.00 2.67 -519.85 -1.39 -42.39 16 12 C 0.25 12.88 4.70 85.63 0.40 13.29 16 13 C -0.54 -28.86 9.39 25.60 0.24 -28.62 16 14 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 15 C 0.02 0.87 5.46 84.65 0.46 1.33 16 16 N -0.92 -54.32 13.29 21.45 0.28 -54.04 16 17 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 C 0.13 4.28 4.83 86.38 0.42 4.70 16 22 C -0.12 -3.56 3.12 -10.79 -0.03 -3.59 16 23 C -0.14 -4.73 7.84 71.98 0.56 -4.17 16 24 C -0.14 -3.05 9.19 71.98 0.66 -2.39 16 25 C -0.07 -2.76 9.46 22.37 0.21 -2.55 16 26 H 0.08 1.07 7.67 -2.39 -0.02 1.05 16 27 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 28 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.17 2.66 6.30 -2.91 -0.02 2.64 16 30 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.16 3.79 7.61 -2.91 -0.02 3.77 16 32 H 0.05 2.52 5.48 -2.39 -0.01 2.50 16 33 H 0.01 0.82 6.93 -2.38 -0.02 0.81 16 34 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.08 2.78 8.09 -2.39 -0.02 2.76 16 36 H 0.09 2.53 7.67 -2.38 -0.02 2.51 16 37 H 0.06 2.00 8.01 -2.39 -0.02 1.98 16 38 H 0.04 1.40 6.22 -2.39 -0.01 1.38 16 39 H 0.05 1.76 8.06 -2.39 -0.02 1.74 16 40 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.12 5.36 7.62 -2.91 -0.02 5.34 16 Total: -1.00 -73.49 372.20 1.49 -72.00 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.99 Total: 19.42 kcal Atomic # 6 Polarization: -53.40 SS G_CDS: 4.96 Total: -48.44 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -1.10 Total: -96.42 kcal Atomic # 8 Polarization: -99.62 SS G_CDS: -5.07 Total: -104.68 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 112.65 SS G_CDS: -0.32 Total: 112.33 kcal Total: -73.49 1.49 -72.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795093989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.111 kcal (2) G-P(sol) polarization free energy of solvation -73.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds