Wall clock time and date at job start Tue Mar 31 2020 14:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 C 1.53005 * 109.47252 * 120.00131 * 2 1 3 5 5 C 1.52999 * 109.46736 * 173.10591 * 4 2 1 6 6 H 1.09001 * 109.47198 * 56.32561 * 5 4 2 7 7 O 1.42895 * 109.47298 * 296.31955 * 5 4 2 8 8 C 1.53005 * 109.46730 * 176.32281 * 5 4 2 9 9 N 1.46496 * 109.46807 * 184.99900 * 8 5 4 10 10 S 1.65601 * 119.99791 * 165.00079 * 9 8 5 11 11 O 1.42100 * 106.40118 * 311.46062 * 10 9 8 12 12 O 1.42095 * 106.40611 * 178.53791 * 10 9 8 13 13 C 1.76208 * 107.21905 * 64.99960 * 10 9 8 14 14 C 1.38659 * 119.87296 * 269.72906 * 13 10 9 15 15 C 1.38611 * 120.49553 * 179.72054 * 14 13 10 16 16 C 1.37638 * 120.25383 * 0.55129 * 15 14 13 17 17 C 1.40700 * 119.74064 * 359.72856 * 16 15 14 18 18 C 1.41395 * 120.24276 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99779 * 151.93117 * 18 17 16 20 20 C 1.39939 * 119.99986 * 331.92711 * 18 17 16 21 21 N 1.30822 * 119.99882 * 162.29995 * 20 18 17 22 22 Si 1.86801 * 120.00252 * 342.30093 * 20 18 17 23 23 H 1.48492 * 109.47094 * 93.80517 * 22 20 18 24 24 H 1.48504 * 109.47162 * 213.80709 * 22 20 18 25 25 H 1.48502 * 109.46710 * 333.80704 * 22 20 18 26 26 C 1.37598 * 119.87634 * 90.00016 * 13 10 9 27 27 H 1.08997 * 109.47450 * 64.40184 * 1 2 3 28 28 H 1.09000 * 109.46809 * 184.40064 * 1 2 3 29 29 H 1.09000 * 109.47053 * 304.39811 * 1 2 3 30 30 H 1.09002 * 109.46558 * 239.99899 * 2 1 3 31 31 H 1.08998 * 109.46870 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47040 * 300.00118 * 3 2 1 33 33 H 1.08994 * 109.47380 * 59.99871 * 3 2 1 34 34 H 1.09001 * 109.46632 * 53.10551 * 4 2 1 35 35 H 1.09000 * 109.46649 * 293.10266 * 4 2 1 36 36 H 0.96698 * 114.00214 * 300.00510 * 7 5 4 37 37 H 1.09005 * 109.46666 * 64.99964 * 8 5 4 38 38 H 1.09000 * 109.46924 * 305.00086 * 8 5 4 39 39 H 0.96994 * 120.00326 * 344.99848 * 9 8 5 40 40 H 1.07997 * 119.75311 * 359.97438 * 14 13 10 41 41 H 1.08000 * 119.87458 * 180.25440 * 15 14 13 42 42 H 1.07994 * 120.13272 * 179.70744 * 16 15 14 43 43 H 0.97006 * 120.00360 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.12466 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5602 -0.8729 1.1656 6 1 4.0167 0.1084 1.0361 7 8 3.8954 -1.7047 0.0531 8 6 4.0807 -1.5114 2.4549 9 7 5.5449 -1.5476 2.4253 10 16 6.3944 -1.8348 3.8175 11 8 5.8544 -0.9656 4.8035 12 8 7.7684 -1.8410 3.4553 13 6 6.0089 -3.4746 4.3348 14 6 4.9406 -3.6956 5.1907 15 6 4.6224 -4.9807 5.6012 16 6 5.3724 -6.0517 5.1713 17 6 6.4623 -5.8387 4.3074 18 6 7.2397 -6.9312 3.8588 19 1 7.7458 -6.8788 2.9062 20 6 7.3532 -8.0804 4.6492 21 7 7.7637 -9.2026 4.1167 22 14 6.9187 -8.0121 6.4647 23 1 5.5041 -8.4233 6.6509 24 1 7.8054 -8.9326 7.2209 25 1 7.1014 -6.6261 6.9655 26 6 6.7726 -4.5302 3.8925 27 1 -0.3634 0.4440 -0.9267 28 1 -0.3633 -1.0247 0.0789 29 1 -0.3633 0.5806 0.8480 30 1 1.8932 -0.5139 -0.8900 31 1 3.1299 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.5795 -1.7072 1.3130 35 1 1.7810 -0.1411 2.1349 36 1 3.5220 -2.5954 0.1013 37 1 3.6938 -2.5270 2.5393 38 1 3.7489 -0.9239 3.3110 39 1 6.0169 -1.4033 1.5903 40 1 4.3495 -2.8606 5.5368 41 1 3.7856 -5.1418 6.2647 42 1 5.1256 -7.0516 5.4962 43 1 7.8421 -9.9994 4.6645 44 1 7.6067 -4.3553 3.2291 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795112259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:19 Heat of formation + Delta-G solvation = -132.474397 kcal Electronic energy + Delta-G solvation = -25902.946145 eV Core-core repulsion = 22138.978099 eV Total energy + Delta-G solvation = -3763.968046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.82870 -37.96161 -36.77520 -35.65599 -35.41529 -34.34003 -33.82951 -30.77445 -30.20613 -29.97742 -27.44625 -25.74219 -25.41401 -22.48816 -22.08996 -20.93998 -20.34396 -19.19720 -18.06340 -17.31058 -16.77551 -16.41755 -16.27838 -15.64405 -15.36879 -14.98137 -14.81150 -14.48251 -14.17107 -14.05502 -13.80986 -13.28484 -13.19529 -12.90949 -12.68774 -12.44668 -12.28954 -12.06302 -11.91409 -11.78453 -11.73400 -11.64963 -11.53533 -11.49417 -11.28730 -11.07133 -10.90601 -10.81919 -10.71490 -10.38369 -10.05888 -10.04299 -9.81214 -9.46711 -9.18872 -8.31719 -7.93690 -7.13300 -4.68390 0.88570 1.87230 2.37780 2.95490 3.08816 3.17213 3.40002 3.81236 4.07006 4.18567 4.28850 4.39033 4.58029 4.65455 4.85526 4.90813 4.96675 5.10604 5.14565 5.33025 5.39611 5.41402 5.49244 5.60206 5.60983 5.68897 5.76205 5.85210 5.85972 5.96607 5.99063 6.10975 6.15122 6.16411 6.42305 6.54238 6.82013 7.01759 7.15231 7.15887 7.34866 7.49155 7.57248 7.73518 8.13615 8.38237 8.56938 9.88349 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016864 B = 0.003186 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.955372 B = 8787.452766 C = 9327.051001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.149 4.149 5 C 0.100 3.900 6 H 0.108 0.892 7 O -0.557 6.557 8 C 0.086 3.914 9 N -1.115 6.115 10 S 2.690 3.310 11 O -0.973 6.973 12 O -0.968 6.968 13 C -0.624 4.624 14 C -0.163 4.163 15 C -0.090 4.090 16 C -0.203 4.203 17 C 0.073 3.927 18 C -0.440 4.440 19 H 0.096 0.904 20 C 0.083 3.917 21 N -0.798 5.798 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.243 1.243 26 C -0.102 4.102 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.377 0.623 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.418 0.582 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.288 0.712 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 13.117 -5.519 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.187 4.187 5 C 0.039 3.961 6 H 0.125 0.875 7 O -0.363 6.363 8 C -0.041 4.041 9 N -0.875 5.875 10 S 2.785 3.215 11 O -0.963 6.963 12 O -0.959 6.959 13 C -0.715 4.715 14 C -0.184 4.184 15 C -0.110 4.110 16 C -0.223 4.223 17 C 0.069 3.931 18 C -0.468 4.468 19 H 0.114 0.886 20 C -0.138 4.138 21 N -0.421 5.421 22 Si 0.736 3.264 23 H -0.194 1.194 24 H -0.214 1.214 25 H -0.167 1.167 26 C -0.123 4.123 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.225 0.775 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.253 0.747 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.099 0.901 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.319 13.959 -5.163 18.698 hybrid contribution -0.653 -1.487 0.687 1.763 sum -11.972 12.472 -4.476 17.858 Atomic orbital electron populations 1.21856 0.95357 1.01710 1.01614 1.21042 0.95340 0.96338 0.98529 1.21906 1.01343 0.95941 1.01596 1.22352 0.95457 1.01797 0.99122 1.22199 0.94034 0.94896 0.84950 0.87465 1.86570 1.77430 1.27841 1.44412 1.22000 0.80128 1.02018 0.99966 1.55451 1.15077 1.89357 1.27576 1.01682 0.72663 0.74690 0.72470 1.93516 1.80082 1.64347 1.58377 1.93558 1.31442 1.87810 1.83041 1.29955 1.07983 1.20697 1.12883 1.20043 0.99035 0.96696 1.02587 1.20686 0.98537 0.92963 0.98784 1.21303 0.98062 0.97666 1.05249 1.17791 0.91577 0.92498 0.91226 1.19551 1.25515 0.95878 1.05814 0.88635 1.26186 0.91886 0.93909 1.01777 1.69670 1.33255 1.00467 1.38743 0.86346 0.78163 0.80391 0.81478 1.19449 1.21432 1.16656 1.20836 0.98131 0.91477 1.01853 0.92821 0.92702 0.92788 0.90331 0.92355 0.92849 0.92757 0.91035 0.90539 0.77479 0.91000 0.89578 0.74688 0.87129 0.87953 0.87592 0.90098 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 2 C -0.09 -0.69 2.86 -90.62 -0.26 -0.95 16 3 C -0.15 -1.09 8.98 37.16 0.33 -0.76 16 4 C -0.15 -1.11 4.35 -26.73 -0.12 -1.23 16 5 C 0.10 0.90 2.94 -26.73 -0.08 0.82 16 6 H 0.11 0.97 6.47 -51.93 -0.34 0.64 16 7 O -0.56 -5.40 12.51 -35.23 -0.44 -5.84 16 8 C 0.09 0.94 5.86 -4.04 -0.02 0.92 16 9 N -1.12 -14.77 5.96 -10.61 -0.06 -14.83 16 10 S 2.69 47.27 5.74 -107.50 -0.62 46.66 16 11 O -0.97 -18.58 16.73 -57.17 -0.96 -19.54 16 12 O -0.97 -19.65 17.27 -57.17 -0.99 -20.64 16 13 C -0.62 -12.64 5.94 -39.66 -0.24 -12.88 16 14 C -0.16 -3.21 9.53 -39.29 -0.37 -3.58 16 15 C -0.09 -1.84 10.02 -39.66 -0.40 -2.24 16 16 C -0.20 -4.65 7.17 -38.87 -0.28 -4.93 16 17 C 0.07 1.79 5.16 -106.83 -0.55 1.24 16 18 C -0.44 -11.44 9.58 -37.74 -0.36 -11.80 16 19 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.08 2.09 5.42 -17.34 -0.09 1.99 16 21 N -0.80 -20.45 13.93 55.55 0.77 -19.68 16 22 Si 0.91 20.02 24.46 -169.99 -4.16 15.86 16 23 H -0.27 -5.63 6.62 56.52 0.37 -5.25 16 24 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.24 -5.55 6.85 56.52 0.39 -5.16 16 26 C -0.10 -2.31 9.26 -38.87 -0.36 -2.67 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.65 7.60 -51.93 -0.39 0.25 16 31 H 0.06 0.44 6.55 -51.93 -0.34 0.10 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.38 2.77 9.05 45.56 0.41 3.18 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.92 7.75 -51.93 -0.40 0.52 16 39 H 0.42 5.00 8.51 -34.47 -0.29 4.71 16 40 H 0.11 1.93 7.59 -52.49 -0.40 1.53 16 41 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.11 2.38 4.41 -52.49 -0.23 2.15 16 43 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 44 H 0.12 2.62 7.60 -52.49 -0.40 2.22 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -30.81 368.52 -9.14 -39.95 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.79 Total: 9.21 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: -2.46 Total: -36.71 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.71 Total: -34.51 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -2.38 Total: -46.01 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.16 Total: 15.86 kcal Atomic # 16 Polarization: 47.27 SS G_CDS: -0.62 Total: 46.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.81 -9.14 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795112259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.525 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds