Wall clock time and date at job start Tue Mar 31 2020 14:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 C 1.53005 * 109.47252 * 120.00131 * 2 1 3 5 5 C 1.52999 * 109.46736 * 173.10591 * 4 2 1 6 6 H 1.09001 * 109.47198 * 56.32561 * 5 4 2 7 7 O 1.42895 * 109.47298 * 296.31955 * 5 4 2 8 8 C 1.53005 * 109.46730 * 176.32281 * 5 4 2 9 9 N 1.46496 * 109.46807 * 184.99900 * 8 5 4 10 10 S 1.65601 * 119.99791 * 165.00079 * 9 8 5 11 11 O 1.42100 * 106.40118 * 311.46062 * 10 9 8 12 12 O 1.42095 * 106.40611 * 178.53791 * 10 9 8 13 13 C 1.76208 * 107.21905 * 64.99960 * 10 9 8 14 14 C 1.38659 * 119.87296 * 269.72906 * 13 10 9 15 15 C 1.38611 * 120.49553 * 179.72054 * 14 13 10 16 16 C 1.37638 * 120.25383 * 0.55129 * 15 14 13 17 17 C 1.40700 * 119.74064 * 359.72856 * 16 15 14 18 18 C 1.41395 * 120.24276 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99779 * 151.93117 * 18 17 16 20 20 C 1.39939 * 119.99986 * 331.92711 * 18 17 16 21 21 N 1.30822 * 119.99882 * 162.29995 * 20 18 17 22 22 Si 1.86801 * 120.00252 * 342.30093 * 20 18 17 23 23 H 1.48492 * 109.47094 * 93.80517 * 22 20 18 24 24 H 1.48504 * 109.47162 * 213.80709 * 22 20 18 25 25 H 1.48502 * 109.46710 * 333.80704 * 22 20 18 26 26 C 1.37598 * 119.87634 * 90.00016 * 13 10 9 27 27 H 1.08997 * 109.47450 * 64.40184 * 1 2 3 28 28 H 1.09000 * 109.46809 * 184.40064 * 1 2 3 29 29 H 1.09000 * 109.47053 * 304.39811 * 1 2 3 30 30 H 1.09002 * 109.46558 * 239.99899 * 2 1 3 31 31 H 1.08998 * 109.46870 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47040 * 300.00118 * 3 2 1 33 33 H 1.08994 * 109.47380 * 59.99871 * 3 2 1 34 34 H 1.09001 * 109.46632 * 53.10551 * 4 2 1 35 35 H 1.09000 * 109.46649 * 293.10266 * 4 2 1 36 36 H 0.96698 * 114.00214 * 300.00510 * 7 5 4 37 37 H 1.09005 * 109.46666 * 64.99964 * 8 5 4 38 38 H 1.09000 * 109.46924 * 305.00086 * 8 5 4 39 39 H 0.96994 * 120.00326 * 344.99848 * 9 8 5 40 40 H 1.07997 * 119.75311 * 359.97438 * 14 13 10 41 41 H 1.08000 * 119.87458 * 180.25440 * 15 14 13 42 42 H 1.07994 * 120.13272 * 179.70744 * 16 15 14 43 43 H 0.97006 * 120.00360 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.12466 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5602 -0.8729 1.1656 6 1 4.0167 0.1084 1.0361 7 8 3.8954 -1.7047 0.0531 8 6 4.0807 -1.5114 2.4549 9 7 5.5449 -1.5476 2.4253 10 16 6.3944 -1.8348 3.8175 11 8 5.8544 -0.9656 4.8035 12 8 7.7684 -1.8410 3.4553 13 6 6.0089 -3.4746 4.3348 14 6 4.9406 -3.6956 5.1907 15 6 4.6224 -4.9807 5.6012 16 6 5.3724 -6.0517 5.1713 17 6 6.4623 -5.8387 4.3074 18 6 7.2397 -6.9312 3.8588 19 1 7.7458 -6.8788 2.9062 20 6 7.3532 -8.0804 4.6492 21 7 7.7637 -9.2026 4.1167 22 14 6.9187 -8.0121 6.4647 23 1 5.5041 -8.4233 6.6509 24 1 7.8054 -8.9326 7.2209 25 1 7.1014 -6.6261 6.9655 26 6 6.7726 -4.5302 3.8925 27 1 -0.3634 0.4440 -0.9267 28 1 -0.3633 -1.0247 0.0789 29 1 -0.3633 0.5806 0.8480 30 1 1.8932 -0.5139 -0.8900 31 1 3.1299 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.5795 -1.7072 1.3130 35 1 1.7810 -0.1411 2.1349 36 1 3.5220 -2.5954 0.1013 37 1 3.6938 -2.5270 2.5393 38 1 3.7489 -0.9239 3.3110 39 1 6.0169 -1.4033 1.5903 40 1 4.3495 -2.8606 5.5368 41 1 3.7856 -5.1418 6.2647 42 1 5.1256 -7.0516 5.4962 43 1 7.8421 -9.9994 4.6645 44 1 7.6067 -4.3553 3.2291 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795112259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:18 Heat of formation + Delta-G solvation = -155.986802 kcal Electronic energy + Delta-G solvation = -25903.965719 eV Core-core repulsion = 22138.978099 eV Total energy + Delta-G solvation = -3764.987621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.70706 -39.54302 -38.28853 -36.94181 -36.34185 -35.66297 -35.28833 -32.55840 -31.89820 -30.73432 -27.97822 -27.26340 -26.50729 -24.14124 -22.91746 -22.64662 -21.00437 -20.59760 -19.65970 -18.57210 -18.10646 -17.80092 -17.22258 -16.91836 -16.73594 -16.54152 -15.95788 -15.58213 -15.35244 -14.90253 -14.84234 -14.68870 -14.67339 -14.13476 -13.98683 -13.58991 -13.43899 -13.36057 -13.23221 -13.12123 -13.07863 -12.97864 -12.88249 -12.54946 -12.51610 -12.19500 -12.03338 -11.89497 -11.80078 -11.57166 -11.47081 -11.32418 -11.07321 -10.80059 -10.44849 -10.00845 -9.71197 -8.98827 -6.61203 -0.54795 0.17259 0.64377 1.19250 1.35414 1.42083 2.01430 2.08326 2.40769 2.74749 3.29608 3.38136 3.52408 3.74288 3.92790 4.08284 4.16317 4.18502 4.27960 4.32592 4.42973 4.47234 4.56445 4.70834 4.75587 4.80943 4.85765 4.89986 4.96777 5.04447 5.05368 5.06746 5.15080 5.22087 5.33278 5.40207 5.42956 5.53542 5.59813 5.61850 5.74718 5.98085 6.08321 6.22657 6.56911 6.67558 6.86861 8.09339 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016864 B = 0.003186 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.955372 B = 8787.452766 C = 9327.051001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.144 4.144 5 C 0.106 3.894 6 H 0.108 0.892 7 O -0.570 6.570 8 C 0.075 3.925 9 N -1.101 6.101 10 S 2.718 3.282 11 O -0.981 6.981 12 O -0.998 6.998 13 C -0.631 4.631 14 C -0.143 4.143 15 C -0.093 4.093 16 C -0.210 4.210 17 C 0.055 3.945 18 C -0.482 4.482 19 H 0.060 0.940 20 C 0.047 3.953 21 N -0.841 5.841 22 Si 0.960 3.040 23 H -0.246 1.246 24 H -0.276 1.276 25 H -0.256 1.256 26 C -0.124 4.124 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.387 0.613 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.426 0.574 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.109 0.891 43 H 0.297 0.703 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.979 14.975 -4.091 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.183 4.183 5 C 0.046 3.954 6 H 0.125 0.875 7 O -0.378 6.378 8 C -0.051 4.051 9 N -0.864 5.864 10 S 2.810 3.190 11 O -0.970 6.970 12 O -0.988 6.988 13 C -0.719 4.719 14 C -0.164 4.164 15 C -0.112 4.112 16 C -0.229 4.229 17 C 0.051 3.949 18 C -0.511 4.511 19 H 0.079 0.921 20 C -0.168 4.168 21 N -0.466 5.466 22 Si 0.783 3.217 23 H -0.171 1.171 24 H -0.202 1.202 25 H -0.180 1.180 26 C -0.145 4.145 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.236 0.764 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.263 0.737 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.127 0.873 43 H 0.107 0.893 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.095 15.783 -3.736 21.488 hybrid contribution 0.073 -1.802 0.168 1.812 sum -14.022 13.981 -3.568 20.120 Atomic orbital electron populations 1.21838 0.94699 1.01929 1.01911 1.21014 0.95850 0.96219 0.98042 1.21917 1.00967 0.96008 1.01993 1.22324 0.94050 1.02431 0.99479 1.22165 0.95049 0.94507 0.83689 0.87480 1.86555 1.77820 1.28677 1.44710 1.22334 0.78254 1.02920 1.01576 1.55124 1.16238 1.88495 1.26565 1.00861 0.71945 0.73332 0.72856 1.93504 1.80176 1.63769 1.59600 1.93518 1.33894 1.87778 1.83633 1.30429 1.07435 1.21668 1.12387 1.20617 0.97874 0.97723 1.00142 1.21163 0.99064 0.92263 0.98688 1.21513 0.97754 0.98924 1.04711 1.17939 0.92109 0.92627 0.92182 1.19514 1.27946 0.97924 1.05688 0.92130 1.26832 0.91717 0.93271 1.05003 1.69696 1.35500 1.01198 1.40215 0.85595 0.79343 0.79716 0.77068 1.17114 1.20222 1.17983 1.20850 0.98992 0.91829 1.02807 0.92660 0.92540 0.92383 0.91379 0.92941 0.92656 0.92218 0.90286 0.89674 0.76383 0.90396 0.88592 0.73710 0.83704 0.83767 0.87299 0.89260 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.19 71.98 0.66 -0.96 16 2 C -0.09 -1.17 2.86 -10.79 -0.03 -1.20 16 3 C -0.15 -1.90 8.98 71.98 0.65 -1.26 16 4 C -0.14 -1.75 4.35 30.60 0.13 -1.62 16 5 C 0.11 1.65 2.94 30.60 0.09 1.74 16 6 H 0.11 1.69 6.47 -2.39 -0.02 1.68 16 7 O -0.57 -10.04 12.51 -148.98 -1.86 -11.91 16 8 C 0.08 1.43 5.86 86.38 0.51 1.94 16 9 N -1.10 -26.84 5.96 -187.48 -1.12 -27.95 16 10 S 2.72 90.47 5.74 -56.49 -0.32 90.14 16 11 O -0.98 -34.41 16.73 -128.00 -2.14 -36.55 16 12 O -1.00 -39.99 17.27 -128.00 -2.21 -42.20 16 13 C -0.63 -24.45 5.94 22.22 0.13 -24.32 16 14 C -0.14 -5.09 9.53 22.46 0.21 -4.88 16 15 C -0.09 -3.43 10.02 22.22 0.22 -3.21 16 16 C -0.21 -9.27 7.17 22.73 0.16 -9.10 16 17 C 0.05 2.73 5.16 -21.29 -0.11 2.62 16 18 C -0.48 -26.48 9.58 23.46 0.22 -26.25 16 19 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 20 C 0.05 2.48 5.42 85.26 0.46 2.94 16 21 N -0.84 -44.90 13.93 21.82 0.30 -44.59 16 22 Si 0.96 41.01 24.46 68.60 1.68 42.68 16 23 H -0.25 -9.55 6.62 99.48 0.66 -8.89 16 24 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.26 -11.32 6.85 99.48 0.68 -10.63 16 26 C -0.12 -5.69 9.26 22.73 0.21 -5.48 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 1.01 7.60 -2.39 -0.02 0.99 16 31 H 0.05 0.71 6.55 -2.39 -0.02 0.70 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.39 5.00 9.05 -74.06 -0.67 4.33 16 37 H 0.08 1.41 8.14 -2.38 -0.02 1.40 16 38 H 0.10 1.68 7.75 -2.39 -0.02 1.66 16 39 H 0.43 9.48 8.51 -96.75 -0.82 8.66 16 40 H 0.15 4.22 7.59 -2.91 -0.02 4.20 16 41 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 42 H 0.11 4.70 4.41 -2.91 -0.01 4.69 16 43 H 0.30 14.14 8.30 -92.70 -0.77 13.37 16 44 H 0.11 5.13 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -67.46 368.52 -2.69 -70.15 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.54 Total: 29.28 kcal Atomic # 6 Polarization: -72.57 SS G_CDS: 3.53 Total: -69.05 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -0.81 Total: -72.55 kcal Atomic # 8 Polarization: -84.44 SS G_CDS: -6.22 Total: -90.66 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.68 Total: 42.68 kcal Atomic # 16 Polarization: 90.47 SS G_CDS: -0.32 Total: 90.14 kcal Total: -67.46 -2.69 -70.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795112259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.838 kcal (2) G-P(sol) polarization free energy of solvation -67.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds