Wall clock time and date at job start Tue Mar 31 2020 14:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41599 * 114.00507 * 2 1 4 4 C 1.46498 * 119.99812 * 89.99566 * 3 2 1 5 5 C 1.53001 * 109.47070 * 81.69495 * 4 3 2 6 6 C 1.53001 * 109.46978 * 56.42923 * 5 4 3 7 7 C 1.53000 * 109.47359 * 176.42509 * 5 4 3 8 8 C 1.52996 * 109.47307 * 296.43106 * 5 4 3 9 9 S 1.65594 * 120.00104 * 269.99840 * 3 2 1 10 10 O 1.42101 * 106.40101 * 39.86521 * 9 3 2 11 11 O 1.42097 * 106.40386 * 172.78059 * 9 3 2 12 12 C 1.76198 * 107.21894 * 286.32537 * 9 3 2 13 13 C 1.38647 * 119.87576 * 257.96467 * 12 9 3 14 14 C 1.38615 * 120.50427 * 179.72290 * 13 12 9 15 15 C 1.37642 * 120.24245 * 0.55022 * 14 13 12 16 16 C 1.40693 * 119.74913 * 359.72993 * 15 14 13 17 17 C 1.41394 * 120.24795 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99695 * 145.85961 * 17 16 15 19 19 C 1.39936 * 119.99955 * 325.86057 * 17 16 15 20 20 N 1.30834 * 120.00198 * 160.84277 * 19 17 16 21 21 Si 1.86798 * 120.00229 * 340.84304 * 19 17 16 22 22 H 1.48504 * 109.47081 * 85.29748 * 21 19 17 23 23 H 1.48508 * 109.47399 * 205.29637 * 21 19 17 24 24 H 1.48493 * 109.47086 * 325.30082 * 21 19 17 25 25 C 1.37598 * 119.87289 * 78.24173 * 12 9 3 26 26 H 1.08994 * 109.47529 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47193 * 300.00306 * 1 2 3 28 28 H 1.09000 * 109.46806 * 59.99780 * 1 2 3 29 29 H 1.08997 * 109.47073 * 201.68853 * 4 3 2 30 30 H 1.09000 * 109.47551 * 321.69716 * 4 3 2 31 31 H 1.09004 * 109.47361 * 49.65956 * 6 5 4 32 32 H 1.09002 * 109.47383 * 169.65661 * 6 5 4 33 33 H 1.09003 * 109.47411 * 289.65933 * 6 5 4 34 34 H 1.09008 * 109.46637 * 60.00421 * 7 5 4 35 35 H 1.09004 * 109.47104 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47327 * 300.00491 * 7 5 4 37 37 H 1.09004 * 109.47405 * 59.99757 * 8 5 4 38 38 H 1.09004 * 109.47629 * 179.97438 * 8 5 4 39 39 H 1.08998 * 109.46960 * 299.99805 * 8 5 4 40 40 H 1.08005 * 119.75045 * 0.02562 * 13 12 9 41 41 H 1.07995 * 119.87988 * 180.25907 * 14 13 12 42 42 H 1.08008 * 120.12592 * 179.74814 * 15 14 13 43 43 H 0.96992 * 119.99910 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.13206 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3029 1.9627 1.2687 5 6 3.6371 1.4501 1.8147 6 6 4.7334 1.6686 0.7700 7 6 3.9918 2.2123 3.0930 8 6 3.5206 -0.0431 2.1269 9 16 2.3419 2.0499 -1.4341 10 8 1.2567 1.7609 -2.3048 11 8 2.7435 3.3727 -1.1054 12 6 3.7568 1.2568 -2.1223 13 6 5.0019 1.8590 -2.0247 14 6 6.1246 1.2440 -2.5565 15 6 6.0123 0.0314 -3.1981 16 6 4.7531 -0.5863 -3.3082 17 6 4.6257 -1.8321 -3.9647 18 1 3.8977 -2.5517 -3.6207 19 6 5.4432 -2.1325 -5.0600 20 7 5.6064 -3.3759 -5.4329 21 14 6.3013 -0.7583 -5.9898 22 1 7.5818 -0.4279 -5.3141 23 1 6.5752 -1.1980 -7.3816 24 1 5.4294 0.4434 -6.0129 25 6 3.6210 0.0448 -2.7595 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.3663 3.0385 1.1059 30 1 1.5108 1.7498 1.9866 31 1 4.6947 2.6976 0.4124 32 1 5.7075 1.4768 1.2199 33 1 4.5790 0.9871 -0.0667 34 1 3.2108 2.0566 3.8373 35 1 4.9421 1.8468 3.4822 36 1 4.0748 3.2761 2.8706 37 1 3.2680 -0.5862 1.2162 38 1 4.4712 -0.4085 2.5155 39 1 2.7396 -0.1988 2.8712 40 1 5.0986 2.8123 -1.5264 41 1 7.0901 1.7201 -2.4711 42 1 6.8877 -0.4442 -3.6153 43 1 6.1732 -3.5841 -6.1919 44 1 2.6496 -0.4206 -2.8379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796123755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:20 Heat of formation + Delta-G solvation = -51.614702 kcal Electronic energy + Delta-G solvation = -27886.284311 eV Core-core repulsion = 24125.822604 eV Total energy + Delta-G solvation = -3760.461707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.51495 -37.95366 -37.28306 -36.17043 -35.58519 -33.76334 -31.84718 -30.82109 -30.18241 -27.21065 -27.05243 -26.81392 -25.27365 -24.93213 -22.33825 -20.94734 -19.49152 -18.95184 -18.32003 -17.40196 -16.81253 -16.36912 -15.76051 -15.11933 -15.05625 -14.77479 -14.43930 -14.28246 -14.21487 -13.85782 -13.58343 -13.16970 -12.89170 -12.60403 -12.54002 -12.24149 -12.09741 -11.98030 -11.83648 -11.76086 -11.70283 -11.58854 -11.40532 -11.28561 -11.19793 -11.02107 -10.76448 -10.56315 -10.47835 -10.33768 -10.02912 -9.94576 -9.76785 -9.27900 -9.06772 -8.28356 -7.78607 -7.03862 -4.59871 0.49633 1.86804 2.42224 2.60827 3.02516 3.12006 3.21236 3.88024 3.93091 3.98641 4.29921 4.75050 4.84110 4.95218 5.06818 5.15020 5.29098 5.40757 5.43007 5.52558 5.63311 5.68566 5.74305 5.79781 5.84390 5.94736 5.98063 6.00656 6.06252 6.21720 6.26200 6.31076 6.36471 6.45518 6.57256 6.64361 6.71778 6.88018 7.01734 7.09911 7.19091 7.39561 7.65325 7.77887 8.22916 8.44985 8.65914 9.98765 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.004815 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.649589 B = 5814.105532 C = 6072.706124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.112 6.112 3 N -0.863 5.863 4 C 0.118 3.882 5 C -0.085 4.085 6 C -0.174 4.174 7 C -0.139 4.139 8 C -0.136 4.136 9 S 2.689 3.311 10 O -0.960 6.960 11 O -0.955 6.955 12 C -0.623 4.623 13 C -0.145 4.145 14 C -0.097 4.097 15 C -0.192 4.192 16 C 0.073 3.927 17 C -0.450 4.450 18 H 0.095 0.905 19 C 0.086 3.914 20 N -0.804 5.804 21 Si 0.902 3.098 22 H -0.263 1.263 23 H -0.285 1.285 24 H -0.249 1.249 25 C -0.087 4.087 26 H 0.105 0.895 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.286 0.714 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.392 7.654 12.601 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 O -0.119 6.119 3 N -0.737 5.737 4 C -0.007 4.007 5 C -0.087 4.087 6 C -0.231 4.231 7 C -0.197 4.197 8 C -0.194 4.194 9 S 2.786 3.214 10 O -0.950 6.950 11 O -0.946 6.946 12 C -0.716 4.716 13 C -0.166 4.166 14 C -0.117 4.117 15 C -0.212 4.212 16 C 0.069 3.931 17 C -0.479 4.479 18 H 0.113 0.887 19 C -0.133 4.133 20 N -0.428 5.428 21 Si 0.727 3.273 22 H -0.188 1.188 23 H -0.212 1.212 24 H -0.173 1.173 25 C -0.108 4.108 26 H 0.123 0.877 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.135 0.865 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.097 0.903 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.747 7.924 12.120 15.239 hybrid contribution 0.783 -0.179 -0.436 0.914 sum -3.964 7.746 11.683 14.567 Atomic orbital electron populations 1.23499 0.82418 1.03919 1.01729 1.90631 1.19477 1.05188 1.96607 1.60252 1.72289 1.19758 1.21433 1.21820 0.97149 0.96629 0.85119 1.20951 0.95289 0.96652 0.95775 1.22588 0.97808 1.02982 0.99688 1.21837 1.01388 1.00111 0.96374 1.21834 1.00649 0.94671 1.02222 1.02078 0.74821 0.72955 0.71539 1.93534 1.52926 1.85095 1.63443 1.93538 1.84118 1.33508 1.83418 1.29721 1.15243 1.09804 1.16800 1.20165 0.91142 0.99982 1.05326 1.20713 0.97022 0.95528 0.98391 1.21524 0.97270 0.97860 1.04510 1.17781 0.90568 0.92570 0.92184 1.19429 1.17818 0.99028 1.11607 0.88708 1.26084 0.93719 0.96279 0.97197 1.69691 1.30132 1.19503 1.23437 0.86495 0.80783 0.82257 0.77752 1.18831 1.21203 1.17251 1.20874 0.98316 0.92326 0.99264 0.87719 0.93198 0.91675 0.87920 0.90029 0.91804 0.92398 0.89854 0.92900 0.92337 0.92469 0.90855 0.93219 0.93504 0.86538 0.87837 0.87140 0.90305 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.20 11.34 101.05 1.15 0.94 16 2 O -0.11 -1.67 9.67 -13.27 -0.13 -1.80 16 3 N -0.86 -13.08 2.56 -10.61 -0.03 -13.11 16 4 C 0.12 1.46 4.96 -4.04 -0.02 1.44 16 5 C -0.08 -1.04 0.85 -154.51 -0.13 -1.17 16 6 C -0.17 -2.50 6.03 37.16 0.22 -2.28 16 7 C -0.14 -1.36 8.45 37.16 0.31 -1.05 16 8 C -0.14 -1.72 8.09 37.16 0.30 -1.42 16 9 S 2.69 49.21 5.12 -107.50 -0.55 48.66 16 10 O -0.96 -19.72 16.44 -60.04 -0.99 -20.70 16 11 O -0.95 -17.57 14.72 -57.17 -0.84 -18.42 16 12 C -0.62 -12.83 4.35 -39.66 -0.17 -13.00 16 13 C -0.15 -2.86 6.67 -39.29 -0.26 -3.13 16 14 C -0.10 -1.98 10.02 -39.66 -0.40 -2.37 16 15 C -0.19 -4.39 7.35 -38.87 -0.29 -4.68 16 16 C 0.07 1.79 4.97 -106.82 -0.53 1.26 16 17 C -0.45 -11.82 9.54 -37.75 -0.36 -12.18 16 18 H 0.10 2.60 8.06 -52.49 -0.42 2.17 16 19 C 0.09 2.20 5.37 -17.34 -0.09 2.11 16 20 N -0.80 -20.86 13.93 55.55 0.77 -20.09 16 21 Si 0.90 20.13 25.03 -169.99 -4.26 15.87 16 22 H -0.26 -5.60 6.30 56.52 0.36 -5.24 16 23 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.25 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.09 -1.98 9.27 -38.87 -0.36 -2.34 16 26 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.86 7.18 -51.93 -0.37 0.49 16 29 H 0.10 1.23 6.82 -51.93 -0.35 0.88 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.92 6.22 -51.93 -0.32 0.59 16 32 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.08 1.40 4.30 -51.93 -0.22 1.18 16 34 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 1.08 6.40 -51.93 -0.33 0.75 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.12 2.06 6.15 -52.48 -0.32 1.74 16 41 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.11 2.50 5.12 -52.48 -0.27 2.23 16 43 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 44 H 0.12 2.60 7.90 -52.49 -0.41 2.18 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -28.75 353.00 -7.77 -36.52 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.44 Total: 5.61 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: -0.63 Total: -37.86 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.75 Total: -33.20 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.96 Total: -40.92 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.26 Total: 15.87 kcal Atomic # 16 Polarization: 49.21 SS G_CDS: -0.55 Total: 48.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.75 -7.77 -36.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796123755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.096 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds