Wall clock time and date at job start Tue Mar 31 2020 14:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41599 * 114.00507 * 2 1 4 4 C 1.46498 * 119.99812 * 89.99566 * 3 2 1 5 5 C 1.53001 * 109.47070 * 81.69495 * 4 3 2 6 6 C 1.53001 * 109.46978 * 56.42923 * 5 4 3 7 7 C 1.53000 * 109.47359 * 176.42509 * 5 4 3 8 8 C 1.52996 * 109.47307 * 296.43106 * 5 4 3 9 9 S 1.65594 * 120.00104 * 269.99840 * 3 2 1 10 10 O 1.42101 * 106.40101 * 39.86521 * 9 3 2 11 11 O 1.42097 * 106.40386 * 172.78059 * 9 3 2 12 12 C 1.76198 * 107.21894 * 286.32537 * 9 3 2 13 13 C 1.38647 * 119.87576 * 257.96467 * 12 9 3 14 14 C 1.38615 * 120.50427 * 179.72290 * 13 12 9 15 15 C 1.37642 * 120.24245 * 0.55022 * 14 13 12 16 16 C 1.40693 * 119.74913 * 359.72993 * 15 14 13 17 17 C 1.41394 * 120.24795 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99695 * 145.85961 * 17 16 15 19 19 C 1.39936 * 119.99955 * 325.86057 * 17 16 15 20 20 N 1.30834 * 120.00198 * 160.84277 * 19 17 16 21 21 Si 1.86798 * 120.00229 * 340.84304 * 19 17 16 22 22 H 1.48504 * 109.47081 * 85.29748 * 21 19 17 23 23 H 1.48508 * 109.47399 * 205.29637 * 21 19 17 24 24 H 1.48493 * 109.47086 * 325.30082 * 21 19 17 25 25 C 1.37598 * 119.87289 * 78.24173 * 12 9 3 26 26 H 1.08994 * 109.47529 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47193 * 300.00306 * 1 2 3 28 28 H 1.09000 * 109.46806 * 59.99780 * 1 2 3 29 29 H 1.08997 * 109.47073 * 201.68853 * 4 3 2 30 30 H 1.09000 * 109.47551 * 321.69716 * 4 3 2 31 31 H 1.09004 * 109.47361 * 49.65956 * 6 5 4 32 32 H 1.09002 * 109.47383 * 169.65661 * 6 5 4 33 33 H 1.09003 * 109.47411 * 289.65933 * 6 5 4 34 34 H 1.09008 * 109.46637 * 60.00421 * 7 5 4 35 35 H 1.09004 * 109.47104 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47327 * 300.00491 * 7 5 4 37 37 H 1.09004 * 109.47405 * 59.99757 * 8 5 4 38 38 H 1.09004 * 109.47629 * 179.97438 * 8 5 4 39 39 H 1.08998 * 109.46960 * 299.99805 * 8 5 4 40 40 H 1.08005 * 119.75045 * 0.02562 * 13 12 9 41 41 H 1.07995 * 119.87988 * 180.25907 * 14 13 12 42 42 H 1.08008 * 120.12592 * 179.74814 * 15 14 13 43 43 H 0.96992 * 119.99910 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.13206 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3029 1.9627 1.2687 5 6 3.6371 1.4501 1.8147 6 6 4.7334 1.6686 0.7700 7 6 3.9918 2.2123 3.0930 8 6 3.5206 -0.0431 2.1269 9 16 2.3419 2.0499 -1.4341 10 8 1.2567 1.7609 -2.3048 11 8 2.7435 3.3727 -1.1054 12 6 3.7568 1.2568 -2.1223 13 6 5.0019 1.8590 -2.0247 14 6 6.1246 1.2440 -2.5565 15 6 6.0123 0.0314 -3.1981 16 6 4.7531 -0.5863 -3.3082 17 6 4.6257 -1.8321 -3.9647 18 1 3.8977 -2.5517 -3.6207 19 6 5.4432 -2.1325 -5.0600 20 7 5.6064 -3.3759 -5.4329 21 14 6.3013 -0.7583 -5.9898 22 1 7.5818 -0.4279 -5.3141 23 1 6.5752 -1.1980 -7.3816 24 1 5.4294 0.4434 -6.0129 25 6 3.6210 0.0448 -2.7595 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.3663 3.0385 1.1059 30 1 1.5108 1.7498 1.9866 31 1 4.6947 2.6976 0.4124 32 1 5.7075 1.4768 1.2199 33 1 4.5790 0.9871 -0.0667 34 1 3.2108 2.0566 3.8373 35 1 4.9421 1.8468 3.4822 36 1 4.0748 3.2761 2.8706 37 1 3.2680 -0.5862 1.2162 38 1 4.4712 -0.4085 2.5155 39 1 2.7396 -0.1988 2.8712 40 1 5.0986 2.8123 -1.5264 41 1 7.0901 1.7201 -2.4711 42 1 6.8877 -0.4442 -3.6153 43 1 6.1732 -3.5841 -6.1919 44 1 2.6496 -0.4206 -2.8379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796123755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:19 Heat of formation + Delta-G solvation = -69.678410 kcal Electronic energy + Delta-G solvation = -27887.067612 eV Core-core repulsion = 24125.822604 eV Total energy + Delta-G solvation = -3761.245008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.84820 -39.43000 -38.69123 -37.33037 -37.11011 -35.61925 -32.98461 -32.59378 -31.89981 -28.23702 -28.13674 -27.73117 -27.03767 -25.99297 -24.03932 -22.70068 -20.85481 -20.04658 -19.88223 -18.88689 -18.12500 -17.92659 -17.21741 -16.73780 -16.55361 -16.31430 -15.61209 -15.50393 -15.29332 -15.17827 -14.86343 -14.72459 -14.60260 -14.00040 -13.72346 -13.67674 -13.53364 -13.40657 -13.23778 -13.19556 -12.94461 -12.85560 -12.79011 -12.55768 -12.36365 -12.32033 -12.22427 -12.05903 -11.79852 -11.66602 -11.50154 -11.41339 -11.10861 -10.95152 -10.30753 -9.97504 -9.57586 -8.92988 -6.56172 -0.92243 0.16282 0.66562 1.21867 1.28531 1.35204 1.42749 2.06357 2.39662 2.51980 2.73634 3.25837 3.48229 3.87309 3.96640 4.06875 4.17652 4.32307 4.37335 4.47847 4.49713 4.51356 4.60499 4.71624 4.75202 4.76215 4.80201 4.86584 4.90654 4.99124 5.05003 5.08996 5.17926 5.23111 5.30472 5.34642 5.43029 5.45308 5.55121 5.63841 5.69209 5.79456 5.93394 6.00896 6.27106 6.60383 6.73039 8.16040 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.004815 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.649589 B = 5814.105532 C = 6072.706124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 O -0.129 6.129 3 N -0.857 5.857 4 C 0.108 3.892 5 C -0.084 4.084 6 C -0.178 4.178 7 C -0.134 4.134 8 C -0.134 4.134 9 S 2.710 3.290 10 O -0.986 6.986 11 O -0.952 6.952 12 C -0.632 4.632 13 C -0.122 4.122 14 C -0.100 4.100 15 C -0.196 4.196 16 C 0.054 3.946 17 C -0.491 4.491 18 H 0.058 0.942 19 C 0.053 3.947 20 N -0.846 5.846 21 Si 0.949 3.051 22 H -0.241 1.241 23 H -0.271 1.271 24 H -0.263 1.263 25 C -0.106 4.106 26 H 0.126 0.874 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.112 0.888 43 H 0.294 0.706 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 10.609 14.936 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 O -0.136 6.136 3 N -0.734 5.734 4 C -0.015 4.015 5 C -0.085 4.085 6 C -0.235 4.235 7 C -0.192 4.192 8 C -0.191 4.191 9 S 2.804 3.196 10 O -0.976 6.976 11 O -0.943 6.943 12 C -0.722 4.722 13 C -0.143 4.143 14 C -0.119 4.119 15 C -0.216 4.216 16 C 0.051 3.949 17 C -0.520 4.520 18 H 0.076 0.924 19 C -0.162 4.162 20 N -0.472 5.472 21 Si 0.771 3.229 22 H -0.166 1.166 23 H -0.196 1.196 24 H -0.187 1.187 25 C -0.127 4.127 26 H 0.144 0.856 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.130 0.870 43 H 0.105 0.895 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.137 10.864 14.450 18.546 hybrid contribution 0.488 -0.957 -0.901 1.403 sum -3.648 9.907 13.549 17.176 Atomic orbital electron populations 1.23731 0.80748 1.05525 1.02277 1.90635 1.21303 1.04929 1.96708 1.59912 1.72177 1.19938 1.21366 1.22194 0.98306 0.96765 0.84236 1.20960 0.94470 0.96682 0.96438 1.22590 0.99229 1.02127 0.99566 1.21798 1.02192 1.00058 0.95174 1.21799 1.01247 0.94768 1.01335 1.01446 0.73677 0.72711 0.71748 1.93507 1.53347 1.85519 1.65269 1.93533 1.83942 1.33241 1.83589 1.30209 1.17237 1.08766 1.15978 1.20663 0.90545 1.00322 1.02741 1.21155 0.99115 0.94556 0.97037 1.21688 0.96492 0.98765 1.04634 1.17902 0.91971 0.92384 0.92662 1.19374 1.18862 0.99911 1.13876 0.92359 1.26699 0.94169 0.98077 0.97271 1.69718 1.31982 1.20815 1.24718 0.85780 0.80371 0.79149 0.77590 1.16564 1.19635 1.18718 1.20842 0.97675 0.93573 1.00571 0.85643 0.90339 0.93347 0.87032 0.86957 0.91626 0.91659 0.92726 0.91067 0.92059 0.91692 0.93669 0.93225 0.91704 0.83607 0.83784 0.86987 0.89507 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.56 11.34 113.37 1.29 0.73 16 2 O -0.13 -3.77 9.67 -37.06 -0.36 -4.13 16 3 N -0.86 -24.54 2.56 -187.49 -0.48 -25.02 16 4 C 0.11 2.33 4.96 86.38 0.43 2.75 16 5 C -0.08 -1.80 0.85 -52.18 -0.04 -1.85 16 6 C -0.18 -4.67 6.03 71.98 0.43 -4.24 16 7 C -0.13 -2.08 8.45 71.98 0.61 -1.47 16 8 C -0.13 -3.11 8.09 71.98 0.58 -2.53 16 9 S 2.71 95.89 5.12 -56.49 -0.29 95.60 16 10 O -0.99 -40.48 16.44 -125.26 -2.06 -42.54 16 11 O -0.95 -32.50 14.72 -128.00 -1.88 -34.38 16 12 C -0.63 -25.65 4.35 22.22 0.10 -25.56 16 13 C -0.12 -4.53 6.67 22.46 0.15 -4.38 16 14 C -0.10 -3.80 10.02 22.22 0.22 -3.57 16 15 C -0.20 -8.88 7.35 22.73 0.17 -8.71 16 16 C 0.05 2.75 4.97 -21.29 -0.11 2.64 16 17 C -0.49 -27.52 9.54 23.46 0.22 -27.30 16 18 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 19 C 0.05 2.80 5.37 85.25 0.46 3.26 16 20 N -0.85 -46.09 13.93 21.82 0.30 -45.79 16 21 Si 0.95 41.69 25.03 68.60 1.72 43.41 16 22 H -0.24 -9.67 6.30 99.48 0.63 -9.04 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 25 C -0.11 -5.00 9.27 22.73 0.21 -4.79 16 26 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 1.26 7.18 -2.39 -0.02 1.24 16 29 H 0.11 2.24 6.82 -2.39 -0.02 2.22 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.66 6.22 -2.38 -0.01 1.65 16 32 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 33 H 0.05 1.75 4.30 -2.39 -0.01 1.74 16 34 H 0.07 0.86 8.14 -2.38 -0.02 0.85 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 37 H 0.04 1.31 6.40 -2.38 -0.02 1.29 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.15 4.57 6.15 -2.91 -0.02 4.56 16 41 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 42 H 0.11 4.98 5.12 -2.91 -0.01 4.97 16 43 H 0.29 14.38 8.30 -92.71 -0.77 13.61 16 44 H 0.11 5.10 7.90 -2.91 -0.02 5.07 16 Total: -1.00 -65.24 353.00 2.59 -62.65 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.92 Total: 25.21 kcal Atomic # 6 Polarization: -79.74 SS G_CDS: 4.72 Total: -75.02 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -0.18 Total: -70.80 kcal Atomic # 8 Polarization: -76.75 SS G_CDS: -4.30 Total: -81.05 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.72 Total: 43.41 kcal Atomic # 16 Polarization: 95.89 SS G_CDS: -0.29 Total: 95.60 kcal Total: -65.24 2.59 -62.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796123755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.028 kcal (2) G-P(sol) polarization free energy of solvation -65.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds