Wall clock time and date at job start Tue Mar 31 2020 15:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47261 * 2 1 4 4 H 1.08998 * 109.46826 * 305.47894 * 3 2 1 5 5 C 1.50694 * 109.47180 * 185.47595 * 3 2 1 6 6 H 1.08003 * 120.00502 * 245.11045 * 5 3 2 7 7 C 1.37880 * 119.99904 * 65.10807 * 5 3 2 8 8 N 1.31507 * 119.99982 * 5.55398 * 7 5 3 9 9 Si 1.86805 * 119.99993 * 185.55965 * 7 5 3 10 10 H 1.48493 * 109.47446 * 94.99392 * 9 7 5 11 11 H 1.48498 * 109.46933 * 214.99774 * 9 7 5 12 12 H 1.48506 * 109.46955 * 334.99307 * 9 7 5 13 13 O 1.45199 * 109.47075 * 65.47757 * 3 2 1 14 14 C 1.34717 * 116.99955 * 270.00068 * 13 3 2 15 15 O 1.21465 * 120.00279 * 359.97438 * 14 13 3 16 16 C 1.47801 * 120.00215 * 180.02562 * 14 13 3 17 17 C 1.39521 * 119.66227 * 179.97438 * 16 14 13 18 18 C 1.38304 * 119.13426 * 179.72407 * 17 16 14 19 19 C 1.39264 * 118.44265 * 0.53960 * 18 17 16 20 20 O 1.35695 * 120.37778 * 179.76018 * 19 18 17 21 21 C 1.35879 * 118.00225 * 76.38146 * 20 19 18 22 22 C 1.38760 * 120.05854 * 355.33867 * 21 20 19 23 23 C 1.38137 * 119.94282 * 179.79447 * 22 21 20 24 24 C 1.38277 * 120.05586 * 0.45864 * 23 22 21 25 25 C 1.38273 * 120.11813 * 359.79190 * 24 23 22 26 26 C 1.38135 * 120.05639 * 359.97438 * 25 24 23 27 27 C 1.39289 * 119.23709 * 359.47770 * 19 18 17 28 28 N 1.31345 * 120.80955 * 0.25923 * 27 19 18 29 29 H 1.09008 * 109.47210 * 300.00295 * 1 2 3 30 30 H 1.09001 * 109.47193 * 59.99845 * 1 2 3 31 31 H 1.08992 * 109.47115 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47455 * 239.99591 * 2 1 3 33 33 H 1.09001 * 109.46866 * 119.99720 * 2 1 3 34 34 H 0.97011 * 120.00206 * 180.02562 * 8 7 5 35 35 H 1.08006 * 120.43312 * 359.97438 * 17 16 14 36 36 H 1.08007 * 120.77756 * 180.26739 * 18 17 16 37 37 H 1.07997 * 120.02980 * 0.02562 * 22 21 20 38 38 H 1.07996 * 119.97361 * 180.25121 * 23 22 21 39 39 H 1.07997 * 119.93713 * 179.77031 * 24 23 22 40 40 H 1.07995 * 119.97223 * 180.02562 * 25 24 23 41 41 H 1.08002 * 120.02677 * 179.97438 * 26 25 24 42 42 H 1.08003 * 119.59638 * 180.23417 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5988 1.9839 -0.8369 5 6 3.5409 1.4447 -0.1356 6 1 4.1557 1.8119 0.6729 7 6 4.1293 0.9778 -1.2918 8 7 3.3816 0.6330 -2.3172 9 14 5.9886 0.8347 -1.4017 10 1 6.4000 -0.5492 -1.0545 11 1 6.4284 1.1497 -2.7846 12 1 6.6155 1.7902 -0.4532 13 8 1.6657 2.0882 1.2455 14 6 0.4784 2.7243 1.2719 15 8 -0.2246 2.7394 0.2815 16 6 0.0317 3.4046 2.5056 17 6 -1.1990 4.0616 2.5249 18 6 -1.6088 4.6897 3.6869 19 6 -0.7659 4.6505 4.7948 20 8 -1.1267 5.2579 5.9534 21 6 -2.0522 4.6424 6.7350 22 6 -2.6699 3.4799 6.2964 23 6 -3.6074 2.8538 7.0948 24 6 -3.9373 3.3898 8.3260 25 6 -3.3271 4.5510 8.7632 26 6 -2.3854 5.1784 7.9708 27 6 0.4491 3.9757 4.7018 28 7 0.8065 3.3846 3.5846 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7955 0.3042 -3.1306 35 1 -1.8253 4.0760 1.6451 36 1 -2.5583 5.2024 3.7327 37 1 -2.4152 3.0628 5.3333 38 1 -4.0855 1.9467 6.7556 39 1 -4.6732 2.9008 8.9470 40 1 -3.5863 4.9674 9.7254 41 1 -1.9094 6.0856 8.3126 42 1 1.1056 3.9385 5.5586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799628089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:12 Heat of formation + Delta-G solvation = -51.366719 kcal Electronic energy + Delta-G solvation = -26511.260592 eV Core-core repulsion = 22615.365687 eV Total energy + Delta-G solvation = -3895.894905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50634 -40.10485 -39.06719 -37.86589 -35.86599 -33.50716 -32.69433 -31.70478 -31.41728 -31.08166 -29.98005 -27.34147 -25.24812 -24.07270 -23.28889 -22.94914 -22.51574 -21.20617 -19.75302 -19.09277 -17.99239 -17.33610 -17.17842 -16.41420 -16.29000 -15.96598 -15.48824 -14.92713 -14.92223 -14.55215 -14.44474 -14.32427 -13.85883 -13.72667 -13.58245 -13.09501 -12.92077 -12.78409 -12.16681 -12.09276 -12.01546 -11.55485 -11.38198 -11.31120 -11.22090 -10.97806 -10.65603 -10.29011 -10.19094 -10.14305 -9.83805 -9.65046 -9.40997 -9.40191 -9.28115 -8.84093 -8.62142 -8.46381 -6.18950 -4.23494 0.21769 0.90076 0.96515 1.01085 2.48715 2.94364 3.26250 3.27233 3.33288 3.38685 3.41549 3.76264 4.17024 4.33295 4.35359 4.45116 4.52855 4.68092 4.71638 4.77751 4.98512 5.04287 5.14510 5.18628 5.29898 5.47785 5.59876 5.64349 5.80496 5.88143 6.01599 6.09236 6.14408 6.16857 6.24017 6.38247 6.45582 6.81629 6.89519 7.10216 7.11043 7.12964 7.51625 7.61416 7.66785 7.84730 8.11435 8.55142 8.88941 9.40915 10.89849 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.023723 B = 0.002438 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.983036 B =11484.103387 C =11860.942773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.217 3.783 4 H 0.054 0.946 5 C -0.521 4.521 6 H 0.071 0.929 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.326 6.326 14 C 0.508 3.492 15 O -0.502 6.502 16 C 0.109 3.891 17 C -0.098 4.098 18 C -0.100 4.100 19 C 0.050 3.950 20 O -0.251 6.251 21 C 0.119 3.881 22 C -0.195 4.195 23 C -0.080 4.080 24 C -0.153 4.153 25 C -0.084 4.084 26 C -0.143 4.143 27 C 0.101 3.899 28 N -0.409 5.409 29 H 0.032 0.968 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.266 0.734 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.697 7.179 19.348 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.164 3.836 4 H 0.072 0.928 5 C -0.559 4.559 6 H 0.089 0.911 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 O -0.241 6.241 14 C 0.350 3.650 15 O -0.392 6.392 16 C -0.028 4.028 17 C -0.118 4.118 18 C -0.126 4.126 19 C 0.005 3.995 20 O -0.162 6.162 21 C 0.077 3.923 22 C -0.214 4.214 23 C -0.098 4.098 24 C -0.171 4.171 25 C -0.102 4.102 26 C -0.162 4.162 27 C -0.060 4.060 28 N -0.120 5.120 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.177 0.823 36 H 0.168 0.832 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.958 6.808 18.791 24.378 hybrid contribution 0.033 0.206 -0.318 0.380 sum -13.925 7.014 18.473 24.173 Atomic orbital electron populations 1.21869 0.98206 0.99214 1.00832 1.21941 0.92851 0.99292 1.02649 1.20808 0.95552 0.88755 0.78445 0.92820 1.21020 0.89470 1.43356 1.02016 0.91122 1.24893 0.99171 0.95041 0.94756 1.69965 1.35490 1.43282 1.03767 0.86294 0.84005 0.78619 0.77461 1.20377 1.21027 1.19524 1.86672 1.32445 1.61280 1.43660 1.20419 0.81739 0.77059 0.85795 1.90817 1.55331 1.58526 1.34523 1.20725 0.91810 0.97690 0.92576 1.22100 0.95767 0.94868 0.99074 1.21907 1.00478 0.98141 0.92034 1.20061 0.96003 0.97618 0.85833 1.84333 1.56134 1.45625 1.30086 1.19204 0.89724 0.92446 0.90932 1.21388 1.00879 0.97087 1.02026 1.21011 0.95870 0.99095 0.93825 1.21146 1.01766 0.97225 0.96947 1.20993 0.95000 0.95027 0.99161 1.20452 1.01144 1.02321 0.92288 1.23185 0.94486 0.91612 0.96690 1.67930 1.31465 1.14473 0.98181 0.94940 0.92594 0.94630 0.88667 0.93558 0.92420 0.82333 0.83196 0.85401 0.85493 0.85696 0.85105 0.84858 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.57 37.16 0.32 -2.78 16 2 C -0.13 -3.17 5.53 -26.73 -0.15 -3.32 16 3 C 0.22 5.78 2.12 -27.88 -0.06 5.72 16 4 H 0.05 1.57 7.14 -51.93 -0.37 1.20 16 5 C -0.52 -14.70 8.83 -34.44 -0.30 -15.00 16 6 H 0.07 2.00 7.82 -52.48 -0.41 1.59 16 7 C 0.06 1.76 5.22 -17.82 -0.09 1.67 16 8 N -0.89 -25.19 11.95 55.43 0.66 -24.53 16 9 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 O -0.33 -7.99 9.62 -40.54 -0.39 -8.38 16 14 C 0.51 10.85 6.41 34.64 0.22 11.07 16 15 O -0.50 -11.27 13.50 -19.24 -0.26 -11.53 16 16 C 0.11 1.86 6.74 -83.04 -0.56 1.30 16 17 C -0.10 -1.29 9.62 -39.08 -0.38 -1.67 16 18 C -0.10 -1.08 8.69 -39.18 -0.34 -1.42 16 19 C 0.05 0.57 4.65 -38.81 -0.18 0.39 16 20 O -0.25 -2.75 9.99 -2.92 -0.03 -2.78 16 21 C 0.12 1.20 6.63 -39.19 -0.26 0.94 16 22 C -0.20 -1.90 8.96 -39.43 -0.35 -2.25 16 23 C -0.08 -0.66 10.04 -39.60 -0.40 -1.05 16 24 C -0.15 -1.09 10.04 -39.55 -0.40 -1.48 16 25 C -0.08 -0.58 10.04 -39.61 -0.40 -0.98 16 26 C -0.14 -1.19 9.99 -39.43 -0.39 -1.59 16 27 C 0.10 1.31 11.14 -17.37 -0.19 1.11 16 28 N -0.41 -6.78 10.11 -9.68 -0.10 -6.88 16 29 H 0.03 0.67 6.05 -51.92 -0.31 0.36 16 30 H 0.05 1.25 7.82 -51.93 -0.41 0.84 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.10 2.51 6.60 -51.93 -0.34 2.16 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.16 1.91 7.63 -52.48 -0.40 1.51 16 36 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.13 1.29 6.07 -52.49 -0.32 0.97 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.17 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -31.36 361.33 -8.68 -40.04 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.08 Total: 1.76 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -3.91 Total: -9.33 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.56 Total: -31.41 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.68 Total: -22.70 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.36 -8.68 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799628089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.324 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds