Wall clock time and date at job start Tue Mar 31 2020 15:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47261 * 2 1 4 4 H 1.08998 * 109.46826 * 305.47894 * 3 2 1 5 5 C 1.50694 * 109.47180 * 185.47595 * 3 2 1 6 6 H 1.08003 * 120.00502 * 245.11045 * 5 3 2 7 7 C 1.37880 * 119.99904 * 65.10807 * 5 3 2 8 8 N 1.31507 * 119.99982 * 5.55398 * 7 5 3 9 9 Si 1.86805 * 119.99993 * 185.55965 * 7 5 3 10 10 H 1.48493 * 109.47446 * 94.99392 * 9 7 5 11 11 H 1.48498 * 109.46933 * 214.99774 * 9 7 5 12 12 H 1.48506 * 109.46955 * 334.99307 * 9 7 5 13 13 O 1.45199 * 109.47075 * 65.47757 * 3 2 1 14 14 C 1.34717 * 116.99955 * 270.00068 * 13 3 2 15 15 O 1.21465 * 120.00279 * 359.97438 * 14 13 3 16 16 C 1.47801 * 120.00215 * 180.02562 * 14 13 3 17 17 C 1.39521 * 119.66227 * 179.97438 * 16 14 13 18 18 C 1.38304 * 119.13426 * 179.72407 * 17 16 14 19 19 C 1.39264 * 118.44265 * 0.53960 * 18 17 16 20 20 O 1.35695 * 120.37778 * 179.76018 * 19 18 17 21 21 C 1.35879 * 118.00225 * 76.38146 * 20 19 18 22 22 C 1.38760 * 120.05854 * 355.33867 * 21 20 19 23 23 C 1.38137 * 119.94282 * 179.79447 * 22 21 20 24 24 C 1.38277 * 120.05586 * 0.45864 * 23 22 21 25 25 C 1.38273 * 120.11813 * 359.79190 * 24 23 22 26 26 C 1.38135 * 120.05639 * 359.97438 * 25 24 23 27 27 C 1.39289 * 119.23709 * 359.47770 * 19 18 17 28 28 N 1.31345 * 120.80955 * 0.25923 * 27 19 18 29 29 H 1.09008 * 109.47210 * 300.00295 * 1 2 3 30 30 H 1.09001 * 109.47193 * 59.99845 * 1 2 3 31 31 H 1.08992 * 109.47115 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47455 * 239.99591 * 2 1 3 33 33 H 1.09001 * 109.46866 * 119.99720 * 2 1 3 34 34 H 0.97011 * 120.00206 * 180.02562 * 8 7 5 35 35 H 1.08006 * 120.43312 * 359.97438 * 17 16 14 36 36 H 1.08007 * 120.77756 * 180.26739 * 18 17 16 37 37 H 1.07997 * 120.02980 * 0.02562 * 22 21 20 38 38 H 1.07996 * 119.97361 * 180.25121 * 23 22 21 39 39 H 1.07997 * 119.93713 * 179.77031 * 24 23 22 40 40 H 1.07995 * 119.97223 * 180.02562 * 25 24 23 41 41 H 1.08002 * 120.02677 * 179.97438 * 26 25 24 42 42 H 1.08003 * 119.59638 * 180.23417 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5988 1.9839 -0.8369 5 6 3.5409 1.4447 -0.1356 6 1 4.1557 1.8119 0.6729 7 6 4.1293 0.9778 -1.2918 8 7 3.3816 0.6330 -2.3172 9 14 5.9886 0.8347 -1.4017 10 1 6.4000 -0.5492 -1.0545 11 1 6.4284 1.1497 -2.7846 12 1 6.6155 1.7902 -0.4532 13 8 1.6657 2.0882 1.2455 14 6 0.4784 2.7243 1.2719 15 8 -0.2246 2.7394 0.2815 16 6 0.0317 3.4046 2.5056 17 6 -1.1990 4.0616 2.5249 18 6 -1.6088 4.6897 3.6869 19 6 -0.7659 4.6505 4.7948 20 8 -1.1267 5.2579 5.9534 21 6 -2.0522 4.6424 6.7350 22 6 -2.6699 3.4799 6.2964 23 6 -3.6074 2.8538 7.0948 24 6 -3.9373 3.3898 8.3260 25 6 -3.3271 4.5510 8.7632 26 6 -2.3854 5.1784 7.9708 27 6 0.4491 3.9757 4.7018 28 7 0.8065 3.3846 3.5846 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7955 0.3042 -3.1306 35 1 -1.8253 4.0760 1.6451 36 1 -2.5583 5.2024 3.7327 37 1 -2.4152 3.0628 5.3333 38 1 -4.0855 1.9467 6.7556 39 1 -4.6732 2.9008 8.9470 40 1 -3.5863 4.9674 9.7254 41 1 -1.9094 6.0856 8.3126 42 1 1.1056 3.9385 5.5586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799628089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:11 Heat of formation + Delta-G solvation = -67.983123 kcal Electronic energy + Delta-G solvation = -26511.981133 eV Core-core repulsion = 22615.365687 eV Total energy + Delta-G solvation = -3896.615446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.46502 -41.46790 -40.29603 -38.65014 -37.68725 -35.49796 -33.77442 -33.47155 -32.52540 -31.80220 -30.77068 -29.33659 -26.51863 -25.19459 -25.01460 -23.59487 -23.55110 -22.57494 -21.59445 -19.87031 -19.56193 -18.78333 -18.17644 -17.89762 -17.67002 -17.20093 -16.91095 -16.55582 -15.90724 -15.65223 -15.34002 -15.25864 -15.06307 -14.83717 -14.56732 -14.54678 -14.38091 -14.04252 -13.66408 -13.45332 -13.29650 -13.15777 -12.88640 -12.83262 -12.56996 -12.55016 -12.16149 -11.99925 -11.87525 -11.69948 -11.42579 -11.19680 -10.89290 -10.82624 -10.57208 -10.34088 -9.99786 -9.31494 -8.30636 -6.44785 -0.91281 -0.07171 0.34017 0.38693 1.20153 1.40442 1.42237 1.53405 1.74058 1.94545 2.38318 2.53460 2.78474 3.00523 3.04137 3.42052 3.66031 3.66776 3.78402 3.89680 3.92185 4.26213 4.33299 4.35002 4.37174 4.45176 4.46932 4.51195 4.57945 4.67758 4.75734 4.80985 5.04140 5.04570 5.10587 5.17079 5.27179 5.28924 5.45348 5.49211 5.57145 5.59462 5.81316 5.83727 6.04451 6.29049 6.44616 6.60894 6.90565 7.25348 8.78512 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.023723 B = 0.002438 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.983036 B =11484.103387 C =11860.942773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C 0.221 3.779 4 H 0.016 0.984 5 C -0.550 4.550 6 H 0.062 0.938 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.978 3.022 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.268 1.268 13 O -0.343 6.343 14 C 0.504 3.496 15 O -0.523 6.523 16 C 0.076 3.924 17 C -0.083 4.083 18 C -0.085 4.085 19 C 0.071 3.929 20 O -0.255 6.255 21 C 0.097 3.903 22 C -0.209 4.209 23 C -0.090 4.090 24 C -0.151 4.151 25 C -0.082 4.082 26 C -0.148 4.148 27 C 0.098 3.902 28 N -0.441 5.441 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.271 0.729 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.118 0.882 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.146 0.854 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.929 7.750 21.944 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C 0.167 3.833 4 H 0.034 0.966 5 C -0.588 4.588 6 H 0.080 0.920 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.201 1.201 12 H -0.192 1.192 13 O -0.258 6.258 14 C 0.348 3.652 15 O -0.413 6.413 16 C -0.059 4.059 17 C -0.103 4.103 18 C -0.110 4.110 19 C 0.026 3.974 20 O -0.166 6.166 21 C 0.055 3.945 22 C -0.228 4.228 23 C -0.108 4.108 24 C -0.168 4.168 25 C -0.099 4.099 26 C -0.167 4.167 27 C -0.064 4.064 28 N -0.153 5.153 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.187 0.813 36 H 0.201 0.799 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.167 0.833 40 H 0.178 0.822 41 H 0.164 0.836 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -15.217 7.383 21.394 27.272 hybrid contribution 0.261 0.127 -0.918 0.963 sum -14.955 7.510 20.477 26.445 Atomic orbital electron populations 1.21720 0.95880 1.00956 1.00233 1.21783 0.94897 0.97733 1.01631 1.20517 0.94907 0.89503 0.78325 0.96612 1.21274 0.90450 1.44586 1.02478 0.92020 1.25779 1.04120 0.94086 0.94012 1.70070 1.37559 1.43277 1.04228 0.85241 0.77848 0.79040 0.77724 1.19143 1.20104 1.19223 1.86649 1.34563 1.62212 1.42357 1.21163 0.80404 0.76338 0.87344 1.90782 1.55446 1.59281 1.35788 1.20281 0.93822 1.00404 0.91435 1.22161 0.94080 0.93790 1.00263 1.22175 1.01314 0.96983 0.90552 1.20057 0.95281 0.95610 0.86469 1.84299 1.56852 1.45597 1.29838 1.19408 0.90275 0.93189 0.91628 1.21417 1.01820 0.97459 1.02122 1.21269 0.95652 0.99627 0.94284 1.21513 1.01655 0.97102 0.96577 1.21385 0.93925 0.94642 0.99970 1.20746 1.01376 1.02832 0.91709 1.23474 0.95556 0.91325 0.96027 1.67761 1.32468 1.16021 0.99047 0.94671 0.93995 0.91587 0.90709 0.93269 0.91959 0.81333 0.79874 0.86379 0.84244 0.83262 0.82213 0.83622 0.79078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.57 71.98 0.62 -5.11 16 2 C -0.12 -6.23 5.53 30.60 0.17 -6.06 16 3 C 0.22 12.39 2.12 29.85 0.06 12.45 16 4 H 0.02 1.00 7.14 -2.39 -0.02 0.98 16 5 C -0.55 -32.33 8.83 25.60 0.23 -32.10 16 6 H 0.06 3.63 7.82 -2.91 -0.02 3.61 16 7 C 0.02 1.14 5.22 84.66 0.44 1.58 16 8 N -0.91 -53.24 11.95 21.45 0.26 -52.99 16 9 Si 0.98 43.98 29.54 68.60 2.03 46.00 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 13 O -0.34 -17.71 9.62 -56.27 -0.54 -18.25 16 14 C 0.50 22.56 6.41 70.35 0.45 23.01 16 15 O -0.52 -24.60 13.50 19.95 0.27 -24.33 16 16 C 0.08 2.65 6.74 41.83 0.28 2.93 16 17 C -0.08 -2.14 9.62 22.60 0.22 -1.92 16 18 C -0.08 -1.68 8.69 22.53 0.20 -1.48 16 19 C 0.07 1.53 4.65 22.77 0.11 1.64 16 20 O -0.25 -5.09 9.99 -33.35 -0.33 -5.42 16 21 C 0.10 1.74 6.63 22.52 0.15 1.89 16 22 C -0.21 -3.72 8.96 22.37 0.20 -3.52 16 23 C -0.09 -1.28 10.04 22.25 0.22 -1.06 16 24 C -0.15 -1.65 10.04 22.29 0.22 -1.42 16 25 C -0.08 -0.85 10.04 22.25 0.22 -0.62 16 26 C -0.15 -2.06 9.99 22.37 0.22 -1.84 16 27 C 0.10 2.47 11.14 85.02 0.95 3.42 16 28 N -0.44 -14.91 10.11 -184.55 -1.86 -16.78 16 29 H 0.03 1.49 6.05 -2.38 -0.01 1.48 16 30 H 0.04 1.92 7.82 -2.39 -0.02 1.90 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.07 4.09 6.60 -2.39 -0.02 4.07 16 33 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 35 H 0.17 3.95 7.63 -2.91 -0.02 3.93 16 36 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.12 2.26 6.07 -2.91 -0.02 2.24 16 38 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 41 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.19 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -71.11 361.33 5.82 -65.29 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.04 Total: 14.68 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.96 Total: -8.21 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -1.61 Total: -69.77 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -0.61 Total: -48.00 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.11 5.82 -65.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799628089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.691 kcal (2) G-P(sol) polarization free energy of solvation -71.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds