Wall clock time and date at job start Tue Mar 31 2020 15:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47238 * 2 1 4 4 H 1.08995 * 109.47754 * 55.00174 * 3 2 1 5 5 C 1.50708 * 109.47212 * 174.99934 * 3 2 1 6 6 H 1.08000 * 119.99820 * 119.99800 * 5 3 2 7 7 C 1.37878 * 119.99803 * 300.00191 * 5 3 2 8 8 N 1.31509 * 119.99946 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99724 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47348 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46919 * 119.99980 * 9 7 5 12 12 H 1.48494 * 109.47119 * 239.99463 * 9 7 5 13 13 O 1.45204 * 109.47074 * 294.99644 * 3 2 1 14 14 C 1.34712 * 116.99751 * 90.00289 * 13 3 2 15 15 O 1.21472 * 120.00104 * 359.97438 * 14 13 3 16 16 C 1.47804 * 120.00033 * 180.02562 * 14 13 3 17 17 C 1.39522 * 119.65771 * 180.02562 * 16 14 13 18 18 C 1.38312 * 119.12999 * 179.76621 * 17 16 14 19 19 C 1.39261 * 118.44298 * 0.45332 * 18 17 16 20 20 O 1.35694 * 120.37871 * 179.80481 * 19 18 17 21 21 C 1.35880 * 118.00206 * 89.82608 * 20 19 18 22 22 C 1.38753 * 120.05827 * 0.23254 * 21 20 19 23 23 C 1.38138 * 119.94048 * 179.76850 * 22 21 20 24 24 C 1.38268 * 120.05973 * 0.50666 * 23 22 21 25 25 C 1.38273 * 120.11521 * 359.74547 * 24 23 22 26 26 C 1.38140 * 120.05878 * 0.02562 * 25 24 23 27 27 C 1.39291 * 119.23847 * 359.51974 * 19 18 17 28 28 N 1.31347 * 120.80986 * 0.26273 * 27 19 18 29 29 H 1.08998 * 109.47578 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47054 * 300.00327 * 1 2 3 31 31 H 1.09005 * 109.46895 * 59.99847 * 1 2 3 32 32 H 1.09001 * 109.47054 * 239.99673 * 2 1 3 33 33 H 1.09005 * 109.47161 * 119.99672 * 2 1 3 34 34 H 0.97003 * 119.99858 * 180.02562 * 8 7 5 35 35 H 1.07996 * 120.43625 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.77819 * 180.25332 * 18 17 16 37 37 H 1.07996 * 120.03064 * 0.02745 * 22 21 20 38 38 H 1.08006 * 119.97250 * 180.28179 * 23 22 21 39 39 H 1.08003 * 119.94706 * 179.72431 * 24 23 22 40 40 H 1.08004 * 119.97138 * 180.02562 * 25 24 23 41 41 H 1.07994 * 120.03145 * 179.97438 * 26 25 24 42 42 H 1.07999 * 119.59744 * 180.27257 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3374 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5988 1.5451 0.1937 11 1 6.3999 1.6156 2.6092 12 1 6.4961 -0.5191 1.4628 13 8 1.6559 2.0916 -1.2408 14 6 0.4685 2.7277 -1.2561 15 8 -0.2272 2.7394 -0.2604 16 6 0.0117 3.4105 -2.4848 17 6 -1.2191 4.0676 -2.4926 18 6 -1.6336 4.7071 -3.6468 19 6 -0.8047 4.6610 -4.7649 20 8 -1.1746 5.2715 -5.9189 21 6 -0.8100 6.5679 -6.1001 22 6 -0.0774 7.2268 -5.1232 23 6 0.2960 8.5433 -5.3120 24 6 -0.0686 9.2076 -6.4685 25 6 -0.8031 8.5548 -7.4413 26 6 -1.1751 7.2369 -7.2596 27 6 0.4110 3.9861 -4.6831 28 7 0.7775 3.3926 -3.5702 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0604 2.9503 35 1 -1.8380 4.0803 -1.6077 36 1 -2.5795 5.2272 -3.6811 37 1 0.2042 6.7096 -4.2179 38 1 0.8702 9.0553 -4.5539 39 1 0.2205 10.2382 -6.6122 40 1 -1.0863 9.0758 -8.3440 41 1 -1.7491 6.7277 -8.0195 42 1 1.0603 3.9504 -5.5454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799628090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:16 Heat of formation + Delta-G solvation = -50.317920 kcal Electronic energy + Delta-G solvation = -26505.993125 eV Core-core repulsion = 22610.143700 eV Total energy + Delta-G solvation = -3895.849425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48192 -40.10074 -39.06576 -37.85006 -35.86961 -33.54631 -32.68764 -31.69128 -31.35452 -31.03379 -29.96567 -27.34459 -25.25311 -24.01901 -23.29995 -22.98258 -22.49661 -21.17369 -19.71342 -19.10661 -17.95458 -17.38704 -17.15096 -16.44479 -16.27310 -15.94619 -15.48579 -14.91414 -14.85723 -14.64126 -14.38546 -14.26537 -13.85644 -13.68854 -13.52720 -13.21584 -12.87385 -12.75048 -12.15572 -12.08221 -11.97679 -11.50380 -11.39247 -11.33602 -11.18695 -10.97073 -10.65440 -10.29449 -10.20524 -10.13795 -9.78486 -9.63482 -9.40302 -9.38005 -9.25957 -8.80987 -8.63249 -8.45817 -6.18277 -4.24613 0.21003 0.91224 0.97823 1.03101 2.49075 2.95630 3.24367 3.27473 3.33004 3.40239 3.41661 3.75820 4.16416 4.33126 4.35398 4.47866 4.54849 4.70652 4.71537 4.80063 5.00309 5.04896 5.13753 5.20237 5.31508 5.47270 5.61721 5.64236 5.81412 5.90322 6.03737 6.10626 6.16718 6.21534 6.28535 6.43098 6.47466 6.83558 6.92553 7.11718 7.14513 7.17427 7.52837 7.62518 7.71719 7.89707 8.14310 8.55091 8.87402 9.40255 10.88718 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.002592 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.647869 B =10801.312833 C =11756.021241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.218 3.782 4 H 0.049 0.951 5 C -0.518 4.518 6 H 0.071 0.929 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.326 6.326 14 C 0.508 3.492 15 O -0.503 6.503 16 C 0.110 3.890 17 C -0.099 4.099 18 C -0.091 4.091 19 C 0.048 3.952 20 O -0.253 6.253 21 C 0.120 3.880 22 C -0.193 4.193 23 C -0.079 4.079 24 C -0.153 4.153 25 C -0.084 4.084 26 C -0.144 4.144 27 C 0.097 3.903 28 N -0.410 5.410 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.110 0.890 34 H 0.266 0.734 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 14.300 -16.787 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.166 3.834 4 H 0.066 0.934 5 C -0.556 4.556 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.240 6.240 14 C 0.350 3.650 15 O -0.392 6.392 16 C -0.027 4.027 17 C -0.119 4.119 18 C -0.117 4.117 19 C 0.003 3.997 20 O -0.164 6.164 21 C 0.078 3.922 22 C -0.211 4.211 23 C -0.098 4.098 24 C -0.171 4.171 25 C -0.102 4.102 26 C -0.163 4.163 27 C -0.064 4.064 28 N -0.122 5.122 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.177 0.823 36 H 0.169 0.831 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.907 13.611 -16.342 23.463 hybrid contribution 0.103 0.308 0.319 0.455 sum -9.805 13.920 -16.024 23.380 Atomic orbital electron populations 1.21868 0.98436 0.99159 1.00611 1.22030 0.92592 0.99231 1.03555 1.20818 0.95326 0.88884 0.78402 0.93366 1.21079 0.89509 1.38791 1.06237 0.91103 1.24881 0.99281 0.94758 0.95049 1.69895 1.35298 1.37992 1.09478 0.86222 0.83867 0.77887 0.78209 1.19417 1.20793 1.20706 1.86675 1.32380 1.61197 1.43784 1.20420 0.81719 0.77116 0.85765 1.90817 1.55731 1.58688 1.34013 1.20734 0.92061 0.97515 0.92375 1.22113 0.95793 0.94691 0.99278 1.21836 1.00549 0.98453 0.90834 1.20011 0.95412 0.98060 0.86195 1.84318 1.73225 1.23132 1.35684 1.19214 0.95623 0.82358 0.95055 1.21355 1.03044 0.96757 0.99991 1.21020 0.97746 0.93591 0.97403 1.21143 1.00827 1.00509 0.94613 1.20990 0.96787 0.93403 0.99022 1.20439 1.04399 0.94892 0.96562 1.23292 0.92926 0.93850 0.96377 1.67912 1.32074 1.14098 0.98116 0.94660 0.92736 0.95133 0.93783 0.87168 0.92445 0.82297 0.83123 0.85525 0.85461 0.85694 0.85125 0.84900 0.81259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.56 37.15 0.32 -2.83 16 2 C -0.14 -3.40 5.49 -26.74 -0.15 -3.54 16 3 C 0.22 5.82 2.25 -27.88 -0.06 5.76 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.60 8.90 -34.44 -0.31 -14.90 16 6 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.99 11.29 55.43 0.63 -24.37 16 9 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 O -0.33 -8.00 9.62 -40.52 -0.39 -8.39 16 14 C 0.51 10.85 6.39 34.64 0.22 11.07 16 15 O -0.50 -11.27 13.50 -19.24 -0.26 -11.53 16 16 C 0.11 1.87 6.74 -83.04 -0.56 1.31 16 17 C -0.10 -1.30 9.62 -39.08 -0.38 -1.68 16 18 C -0.09 -0.98 10.03 -39.17 -0.39 -1.38 16 19 C 0.05 0.55 4.00 -38.81 -0.16 0.40 16 20 O -0.25 -2.78 9.99 -2.92 -0.03 -2.81 16 21 C 0.12 1.22 6.67 -39.20 -0.26 0.96 16 22 C -0.19 -1.95 9.20 -39.43 -0.36 -2.31 16 23 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 24 C -0.15 -1.13 10.04 -39.56 -0.40 -1.53 16 25 C -0.08 -0.60 10.04 -39.60 -0.40 -0.99 16 26 C -0.14 -1.22 9.99 -39.42 -0.39 -1.61 16 27 C 0.10 1.25 11.04 -17.37 -0.19 1.06 16 28 N -0.41 -6.81 10.11 -9.68 -0.10 -6.91 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 1.23 7.79 -51.93 -0.40 0.82 16 31 H 0.03 0.65 6.06 -51.93 -0.31 0.33 16 32 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.11 2.96 5.95 -51.93 -0.31 2.65 16 34 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.16 1.91 7.63 -52.49 -0.40 1.51 16 36 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.13 1.36 6.68 -52.49 -0.35 1.01 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 39 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -31.14 361.69 -8.76 -39.90 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.08 Total: 2.20 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.96 Total: -9.67 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.53 Total: -31.27 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.68 Total: -22.73 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.14 -8.76 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799628090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.417 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds