Wall clock time and date at job start Tue Mar 31 2020 15:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47238 * 2 1 4 4 H 1.08995 * 109.47754 * 55.00174 * 3 2 1 5 5 C 1.50708 * 109.47212 * 174.99934 * 3 2 1 6 6 H 1.08000 * 119.99820 * 119.99800 * 5 3 2 7 7 C 1.37878 * 119.99803 * 300.00191 * 5 3 2 8 8 N 1.31509 * 119.99946 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99724 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47348 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46919 * 119.99980 * 9 7 5 12 12 H 1.48494 * 109.47119 * 239.99463 * 9 7 5 13 13 O 1.45204 * 109.47074 * 294.99644 * 3 2 1 14 14 C 1.34712 * 116.99751 * 90.00289 * 13 3 2 15 15 O 1.21472 * 120.00104 * 359.97438 * 14 13 3 16 16 C 1.47804 * 120.00033 * 180.02562 * 14 13 3 17 17 C 1.39522 * 119.65771 * 180.02562 * 16 14 13 18 18 C 1.38312 * 119.12999 * 179.76621 * 17 16 14 19 19 C 1.39261 * 118.44298 * 0.45332 * 18 17 16 20 20 O 1.35694 * 120.37871 * 179.80481 * 19 18 17 21 21 C 1.35880 * 118.00206 * 89.82608 * 20 19 18 22 22 C 1.38753 * 120.05827 * 0.23254 * 21 20 19 23 23 C 1.38138 * 119.94048 * 179.76850 * 22 21 20 24 24 C 1.38268 * 120.05973 * 0.50666 * 23 22 21 25 25 C 1.38273 * 120.11521 * 359.74547 * 24 23 22 26 26 C 1.38140 * 120.05878 * 0.02562 * 25 24 23 27 27 C 1.39291 * 119.23847 * 359.51974 * 19 18 17 28 28 N 1.31347 * 120.80986 * 0.26273 * 27 19 18 29 29 H 1.08998 * 109.47578 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47054 * 300.00327 * 1 2 3 31 31 H 1.09005 * 109.46895 * 59.99847 * 1 2 3 32 32 H 1.09001 * 109.47054 * 239.99673 * 2 1 3 33 33 H 1.09005 * 109.47161 * 119.99672 * 2 1 3 34 34 H 0.97003 * 119.99858 * 180.02562 * 8 7 5 35 35 H 1.07996 * 120.43625 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.77819 * 180.25332 * 18 17 16 37 37 H 1.07996 * 120.03064 * 0.02745 * 22 21 20 38 38 H 1.08006 * 119.97250 * 180.28179 * 23 22 21 39 39 H 1.08003 * 119.94706 * 179.72431 * 24 23 22 40 40 H 1.08004 * 119.97138 * 180.02562 * 25 24 23 41 41 H 1.07994 * 120.03145 * 179.97438 * 26 25 24 42 42 H 1.07999 * 119.59744 * 180.27257 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3374 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5988 1.5451 0.1937 11 1 6.3999 1.6156 2.6092 12 1 6.4961 -0.5191 1.4628 13 8 1.6559 2.0916 -1.2408 14 6 0.4685 2.7277 -1.2561 15 8 -0.2272 2.7394 -0.2604 16 6 0.0117 3.4105 -2.4848 17 6 -1.2191 4.0676 -2.4926 18 6 -1.6336 4.7071 -3.6468 19 6 -0.8047 4.6610 -4.7649 20 8 -1.1746 5.2715 -5.9189 21 6 -0.8100 6.5679 -6.1001 22 6 -0.0774 7.2268 -5.1232 23 6 0.2960 8.5433 -5.3120 24 6 -0.0686 9.2076 -6.4685 25 6 -0.8031 8.5548 -7.4413 26 6 -1.1751 7.2369 -7.2596 27 6 0.4110 3.9861 -4.6831 28 7 0.7775 3.3926 -3.5702 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0604 2.9503 35 1 -1.8380 4.0803 -1.6077 36 1 -2.5795 5.2272 -3.6811 37 1 0.2042 6.7096 -4.2179 38 1 0.8702 9.0553 -4.5539 39 1 0.2205 10.2382 -6.6122 40 1 -1.0863 9.0758 -8.3440 41 1 -1.7491 6.7277 -8.0195 42 1 1.0603 3.9504 -5.5454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799628090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:15 Heat of formation + Delta-G solvation = -66.629398 kcal Electronic energy + Delta-G solvation = -26506.700444 eV Core-core repulsion = 22610.143700 eV Total energy + Delta-G solvation = -3896.556744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.45294 -41.46857 -40.30106 -38.65128 -37.69506 -35.54247 -33.76772 -33.40053 -32.52286 -31.80264 -30.76861 -29.34540 -26.52782 -25.19435 -24.99477 -23.66004 -23.53082 -22.55294 -21.57550 -19.90057 -19.53508 -18.80338 -18.20025 -17.90494 -17.65852 -17.20171 -16.91775 -16.57174 -15.89788 -15.58184 -15.46688 -15.18366 -14.91398 -14.88077 -14.73224 -14.44660 -14.38513 -13.91124 -13.83971 -13.38763 -13.31595 -13.14326 -12.87210 -12.83383 -12.57742 -12.56320 -12.15552 -12.01486 -11.85184 -11.70207 -11.42287 -11.22017 -10.87016 -10.81503 -10.55203 -10.33830 -10.00389 -9.33244 -8.28895 -6.45068 -0.92411 -0.06851 0.33453 0.38468 1.19490 1.40396 1.41365 1.54436 1.73593 1.95990 2.37948 2.53885 2.77430 3.00139 3.03409 3.41572 3.65070 3.69722 3.80278 3.88470 3.91193 4.25157 4.35027 4.35223 4.36989 4.45610 4.46643 4.50881 4.59201 4.68740 4.75343 4.80429 5.03812 5.05781 5.11247 5.18373 5.26560 5.31150 5.45070 5.49036 5.56727 5.63913 5.83306 5.87120 6.06280 6.29161 6.43650 6.59987 6.89886 7.25339 8.78266 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.002592 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.647869 B =10801.312833 C =11756.021241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.222 3.778 4 H 0.013 0.987 5 C -0.549 4.549 6 H 0.061 0.939 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.274 1.274 12 H -0.270 1.270 13 O -0.343 6.343 14 C 0.503 3.497 15 O -0.522 6.522 16 C 0.077 3.923 17 C -0.083 4.083 18 C -0.076 4.076 19 C 0.069 3.931 20 O -0.255 6.255 21 C 0.099 3.901 22 C -0.209 4.209 23 C -0.092 4.092 24 C -0.151 4.151 25 C -0.081 4.081 26 C -0.147 4.147 27 C 0.094 3.906 28 N -0.442 5.442 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.271 0.729 35 H 0.170 0.830 36 H 0.187 0.813 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.149 0.851 40 H 0.162 0.838 41 H 0.148 0.852 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.173 16.005 -19.002 27.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.169 3.831 4 H 0.031 0.969 5 C -0.587 4.587 6 H 0.079 0.921 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.199 1.199 12 H -0.195 1.195 13 O -0.258 6.258 14 C 0.347 3.653 15 O -0.413 6.413 16 C -0.058 4.058 17 C -0.103 4.103 18 C -0.102 4.102 19 C 0.024 3.976 20 O -0.166 6.166 21 C 0.058 3.942 22 C -0.227 4.227 23 C -0.110 4.110 24 C -0.169 4.169 25 C -0.098 4.098 26 C -0.166 4.166 27 C -0.068 4.068 28 N -0.155 5.155 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.188 0.812 36 H 0.204 0.796 37 H 0.131 0.869 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.646 15.324 -18.560 26.318 hybrid contribution 0.239 -0.039 0.840 0.874 sum -10.407 15.285 -17.720 25.611 Atomic orbital electron populations 1.21720 0.96124 1.00818 1.00090 1.21874 0.94633 0.97894 1.02363 1.20523 0.94771 0.89478 0.78347 0.96908 1.21311 0.90429 1.40052 1.06864 0.92083 1.25768 1.04211 0.93802 0.94280 1.70001 1.37312 1.37876 1.09810 0.85173 0.77738 0.78408 0.78322 1.19148 1.19896 1.19494 1.86653 1.34510 1.62128 1.42508 1.21166 0.80380 0.76416 0.87298 1.90780 1.55830 1.59421 1.35253 1.20297 0.94053 1.00276 0.91203 1.22189 0.94133 0.93453 1.00564 1.22135 1.01479 0.97222 0.89341 1.20010 0.94501 0.96556 0.86526 1.84285 1.73390 1.23897 1.35065 1.19401 0.96936 0.81833 0.96059 1.21352 1.04030 0.97581 0.99779 1.21254 0.98018 0.93238 0.98451 1.21502 0.99880 1.01602 0.93872 1.21394 0.95667 0.92884 0.99877 1.20746 1.04206 0.95497 0.96133 1.23547 0.93971 0.93534 0.95746 1.67738 1.33159 1.15592 0.99002 0.91788 0.93925 0.94909 0.93906 0.89145 0.91918 0.81225 0.79557 0.86932 0.84511 0.83276 0.82092 0.83444 0.79453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.56 71.98 0.62 -5.21 16 2 C -0.13 -6.72 5.49 30.59 0.17 -6.55 16 3 C 0.22 12.49 2.25 29.85 0.07 12.56 16 4 H 0.01 0.81 7.16 -2.39 -0.02 0.80 16 5 C -0.55 -32.23 8.90 25.60 0.23 -32.00 16 6 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 7 C 0.02 1.08 5.29 84.66 0.45 1.53 16 8 N -0.91 -52.54 11.29 21.45 0.24 -52.30 16 9 Si 0.98 43.83 29.54 68.60 2.03 45.86 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 O -0.34 -17.78 9.62 -56.22 -0.54 -18.32 16 14 C 0.50 22.58 6.39 70.35 0.45 23.03 16 15 O -0.52 -24.54 13.50 19.93 0.27 -24.27 16 16 C 0.08 2.69 6.74 41.83 0.28 2.97 16 17 C -0.08 -2.15 9.62 22.60 0.22 -1.93 16 18 C -0.08 -1.50 10.03 22.53 0.23 -1.28 16 19 C 0.07 1.49 4.00 22.77 0.09 1.59 16 20 O -0.26 -5.09 9.99 -33.36 -0.33 -5.43 16 21 C 0.10 1.83 6.67 22.52 0.15 1.98 16 22 C -0.21 -3.96 9.20 22.37 0.21 -3.76 16 23 C -0.09 -1.42 10.04 22.25 0.22 -1.19 16 24 C -0.15 -1.76 10.04 22.29 0.22 -1.54 16 25 C -0.08 -0.86 10.04 22.25 0.22 -0.64 16 26 C -0.15 -2.07 9.99 22.37 0.22 -1.84 16 27 C 0.09 2.39 11.04 85.02 0.94 3.33 16 28 N -0.44 -15.05 10.11 -184.54 -1.86 -16.92 16 29 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.04 1.97 7.79 -2.39 -0.02 1.96 16 31 H 0.03 1.42 6.06 -2.38 -0.01 1.40 16 32 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 5.05 5.95 -2.38 -0.01 5.03 16 34 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.17 3.95 7.63 -2.91 -0.02 3.93 16 36 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.11 2.39 6.68 -2.91 -0.02 2.37 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 40 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 41 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.19 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -70.61 361.69 5.82 -64.79 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.04 Total: 15.55 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 4.98 Total: -8.96 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -1.62 Total: -69.22 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -0.60 Total: -48.02 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -70.61 5.82 -64.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799628090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.844 kcal (2) G-P(sol) polarization free energy of solvation -70.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds