Wall clock time and date at job start Tue Mar 31 2020 16:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47504 * 2 1 4 4 C 1.42896 * 113.99964 * 269.99922 * 3 2 1 5 5 C 1.53007 * 109.46665 * 179.97438 * 4 3 2 6 6 O 1.45199 * 109.46817 * 65.00561 * 5 4 3 7 7 C 1.34869 * 116.99582 * 179.97438 * 6 5 4 8 8 O 1.21568 * 120.00101 * 359.97438 * 7 6 5 9 9 C 1.46593 * 119.99760 * 180.27409 * 7 6 5 10 10 C 1.34707 * 119.99953 * 190.92144 * 9 7 6 11 11 C 1.47390 * 119.99665 * 32.08380 * 10 9 7 12 12 C 1.40646 * 119.27682 * 186.51631 * 11 10 9 13 13 C 1.36319 * 119.79803 * 179.74045 * 12 11 10 14 14 C 1.40886 * 118.30041 * 0.50155 * 13 12 11 15 15 C 1.40368 * 121.22490 * 179.79141 * 14 13 12 16 16 C 1.36170 * 119.66192 * 179.97438 * 15 14 13 17 17 C 1.39400 * 120.90767 * 0.02562 * 16 15 14 18 18 C 1.36029 * 121.06577 * 359.97273 * 17 16 15 19 19 C 1.40800 * 119.74262 * 0.02562 * 18 17 16 20 20 N 1.32153 * 119.28167 * 6.79319 * 11 10 9 21 21 C 1.50701 * 109.46737 * 120.00713 * 2 1 3 22 22 N 1.27942 * 120.00101 * 344.98920 * 21 2 1 23 23 Si 1.86802 * 119.99843 * 164.99694 * 21 2 1 24 24 H 1.48503 * 109.47007 * 59.99697 * 23 21 2 25 25 H 1.48504 * 109.46873 * 179.97438 * 23 21 2 26 26 H 1.48497 * 109.47032 * 299.99738 * 23 21 2 27 27 H 1.09005 * 109.46846 * 300.00032 * 1 2 3 28 28 H 1.09005 * 109.46769 * 59.99094 * 1 2 3 29 29 H 1.08997 * 109.47452 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46846 * 239.99968 * 2 1 3 31 31 H 1.09000 * 109.46911 * 60.00441 * 4 3 2 32 32 H 1.09000 * 109.47486 * 300.00029 * 4 3 2 33 33 H 1.08994 * 109.47392 * 304.99872 * 5 4 3 34 34 H 1.08997 * 109.46787 * 185.00024 * 5 4 3 35 35 H 1.08003 * 119.99961 * 10.92100 * 9 7 6 36 36 H 1.08000 * 120.00317 * 212.07722 * 10 9 7 37 37 H 1.08001 * 120.10085 * 0.02562 * 12 11 10 38 38 H 1.07996 * 120.85167 * 180.26427 * 13 12 11 39 39 H 1.07998 * 120.16604 * 359.95221 * 15 14 13 40 40 H 1.08004 * 119.54569 * 179.97438 * 16 15 14 41 41 H 1.08003 * 119.46707 * 179.97438 * 17 16 15 42 42 H 1.08002 * 120.12494 * 180.02562 * 18 17 16 43 43 H 0.97004 * 119.99780 * 180.02562 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.2002 1.8952 -1.3054 5 6 2.7081 3.3334 -1.1845 6 8 4.0234 3.3320 -0.5694 7 6 4.6165 4.5299 -0.3897 8 8 4.0496 5.5473 -0.7383 9 6 5.9476 4.6046 0.2198 10 6 6.4478 5.7958 0.6012 11 6 5.5428 6.8556 1.0811 12 6 6.0616 8.1361 1.3442 13 6 5.2331 9.1256 1.7833 14 6 3.8702 8.8216 1.9702 15 6 2.9638 9.7925 2.4243 16 6 1.6531 9.4641 2.5934 17 6 1.1972 8.1750 2.3220 18 6 2.0465 7.2085 1.8805 19 6 3.4093 7.5086 1.6931 20 7 4.2627 6.5803 1.2600 21 6 2.0323 -0.7106 1.2304 22 7 1.2365 -0.9421 2.2051 23 14 3.8168 -1.2532 1.3325 24 1 4.7023 -0.0667 1.2168 25 1 4.0564 -1.9239 2.6356 26 1 4.1104 -2.1997 0.2267 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.2539 1.8887 -1.8463 32 1 2.9321 1.2953 -1.8464 33 1 2.0194 3.9114 -0.5684 34 1 2.7714 3.7809 -2.1764 35 1 6.5272 3.7047 0.3632 36 1 7.5120 5.9743 0.5554 37 1 7.1123 8.3361 1.1943 38 1 5.6125 10.1161 1.9865 39 1 3.3043 10.7947 2.6389 40 1 0.9574 10.2125 2.9432 41 1 0.1528 7.9399 2.4646 42 1 1.6768 6.2148 1.6745 43 1 1.5599 -1.3992 2.9972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801813916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:35 Heat of formation + Delta-G solvation = -1.689961 kcal Electronic energy + Delta-G solvation = -27182.080544 eV Core-core repulsion = 23274.684046 eV Total energy + Delta-G solvation = -3907.396498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.138 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88123 -41.13189 -39.63263 -38.45766 -37.37334 -36.40189 -34.73165 -34.28473 -32.28825 -31.26526 -30.80320 -30.34824 -26.66367 -25.69279 -24.70018 -24.20842 -23.21115 -22.93883 -20.91154 -20.71013 -19.44107 -18.64842 -18.21518 -18.11474 -17.74477 -17.67797 -16.98253 -16.52273 -16.33299 -15.82680 -15.62499 -15.48246 -15.31082 -14.86450 -14.74069 -14.58578 -14.41404 -14.08303 -14.00096 -13.71692 -13.54824 -13.51302 -13.13675 -13.00144 -12.89738 -12.59047 -12.39559 -12.32955 -12.23536 -11.98000 -11.70867 -11.56932 -11.50490 -11.41062 -10.78653 -10.73438 -10.37548 -9.84371 -9.49492 -9.09757 -0.99550 -0.36075 0.31729 0.67622 1.06440 1.07964 1.41461 1.68041 1.80149 1.91101 1.93941 2.20271 2.73437 3.10405 3.15716 3.54326 3.56560 3.63560 3.81371 3.85837 3.92168 3.94962 4.08398 4.11507 4.16429 4.20868 4.30401 4.34075 4.36547 4.44308 4.49428 4.54998 4.66171 4.70163 4.77360 4.84468 4.88711 4.97983 5.06050 5.06980 5.11848 5.16641 5.36554 5.41806 5.42313 5.49510 5.59552 5.86789 6.17682 6.83503 6.90319 6.92242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.106 3.894 3 O -0.391 6.391 4 C 0.060 3.940 5 C 0.070 3.930 6 O -0.359 6.359 7 C 0.488 3.512 8 O -0.518 6.518 9 C -0.168 4.168 10 C -0.016 4.016 11 C 0.133 3.867 12 C -0.153 4.153 13 C -0.068 4.068 14 C -0.118 4.118 15 C -0.101 4.101 16 C -0.119 4.119 17 C -0.101 4.101 18 C -0.116 4.116 19 C 0.100 3.900 20 N -0.463 5.463 21 C -0.010 4.010 22 N -0.633 5.633 23 Si 0.968 3.032 24 H -0.247 1.247 25 H -0.256 1.256 26 H -0.226 1.226 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.181 0.819 36 H 0.205 0.795 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 0.531 -1.259 4.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 O -0.309 6.309 4 C -0.016 4.016 5 C -0.004 4.004 6 O -0.276 6.276 7 C 0.334 3.666 8 O -0.407 6.407 9 C -0.190 4.190 10 C -0.034 4.034 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.093 4.093 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.136 4.136 17 C -0.121 4.121 18 C -0.135 4.135 19 C -0.023 4.023 20 N -0.172 5.172 21 C -0.259 4.259 22 N -0.250 5.250 23 Si 0.784 3.216 24 H -0.170 1.170 25 H -0.179 1.179 26 H -0.149 1.149 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.199 0.801 36 H 0.222 0.778 37 H 0.196 0.804 38 H 0.191 0.809 39 H 0.177 0.823 40 H 0.174 0.826 41 H 0.167 0.833 42 H 0.135 0.865 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.408 0.056 -1.136 3.593 hybrid contribution 0.008 0.384 0.270 0.469 sum 3.417 0.440 -0.867 3.553 Atomic orbital electron populations 1.22029 0.94517 1.02738 1.02065 1.21387 0.94795 0.82808 0.96192 1.87990 1.86843 1.27476 1.28631 1.22840 1.01568 0.91990 0.85153 1.23120 0.81055 0.97753 0.98491 1.86638 1.33347 1.33457 1.74174 1.21925 0.86660 0.80832 0.77190 1.90852 1.64677 1.36575 1.48621 1.22760 0.92372 1.00506 1.03322 1.23013 1.00592 0.89055 0.90740 1.20811 0.90061 0.94373 0.96432 1.22266 1.03249 0.91927 0.99762 1.21838 0.91127 1.01336 0.95026 1.19312 0.96387 0.94591 1.01709 1.21397 0.93196 0.99520 0.97866 1.21359 0.96565 0.96800 0.98912 1.21236 1.00821 0.93102 0.96951 1.20921 0.91495 1.00417 1.00644 1.19163 0.94608 0.90257 0.98283 1.68165 1.03446 1.35570 1.09984 1.30556 1.05971 0.94409 0.94922 1.68147 1.41920 1.11326 1.03571 0.85241 0.73401 0.80965 0.82008 1.17039 1.17919 1.14851 0.93192 0.91523 0.91184 0.87187 0.88394 0.89738 0.92400 0.88835 0.80132 0.77844 0.80408 0.80906 0.82301 0.82580 0.83319 0.86516 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.31 8.88 71.98 0.64 0.32 16 2 C 0.11 0.15 2.63 29.85 0.08 0.23 16 3 O -0.39 -2.11 9.85 -145.56 -1.43 -3.54 16 4 C 0.06 0.00 6.14 71.98 0.44 0.44 16 5 C 0.07 0.37 5.86 71.98 0.42 0.79 16 6 O -0.36 -3.30 10.20 -55.16 -0.56 -3.86 16 7 C 0.49 5.18 7.04 70.00 0.49 5.67 16 8 O -0.52 -8.57 13.31 19.61 0.26 -8.31 16 9 C -0.17 -0.47 10.00 23.64 0.24 -0.24 16 10 C -0.02 0.00 9.74 23.87 0.23 0.23 16 11 C 0.13 0.93 6.09 42.09 0.26 1.19 16 12 C -0.15 -0.17 9.73 22.41 0.22 0.05 16 13 C -0.07 -0.12 9.88 22.47 0.22 0.10 16 14 C -0.12 -0.87 5.75 -21.21 -0.12 -0.99 16 15 C -0.10 -0.26 9.76 22.31 0.22 -0.04 16 16 C -0.12 -0.24 9.96 22.07 0.22 -0.02 16 17 C -0.10 -0.52 9.94 22.04 0.22 -0.30 16 18 C -0.12 -1.31 9.99 22.38 0.22 -1.08 16 19 C 0.10 1.30 6.61 40.45 0.27 1.57 16 20 N -0.46 -6.41 6.42 -178.14 -1.14 -7.55 16 21 C -0.01 -0.03 5.29 88.68 0.47 0.44 16 22 N -0.63 -3.12 12.60 24.11 0.30 -2.81 16 23 Si 0.97 -0.15 29.56 68.60 2.03 1.88 16 24 H -0.25 -0.79 7.11 99.48 0.71 -0.08 16 25 H -0.26 -0.20 7.11 99.48 0.71 0.51 16 26 H -0.23 0.44 7.11 99.48 0.71 1.15 16 27 H 0.05 0.35 7.88 -2.38 -0.02 0.33 16 28 H 0.07 -0.06 7.87 -2.38 -0.02 -0.08 16 29 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.11 -0.55 7.65 -2.38 -0.02 -0.57 16 31 H 0.10 -0.46 7.87 -2.39 -0.02 -0.48 16 32 H 0.08 -0.33 8.08 -2.39 -0.02 -0.35 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.18 -0.70 8.06 -2.91 -0.02 -0.72 16 36 H 0.20 -2.13 8.06 -2.91 -0.02 -2.15 16 37 H 0.18 -1.35 8.06 -2.91 -0.02 -1.37 16 38 H 0.17 -0.98 8.06 -2.91 -0.02 -1.01 16 39 H 0.16 -0.64 8.06 -2.91 -0.02 -0.66 16 40 H 0.16 -0.64 8.06 -2.91 -0.02 -0.66 16 41 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 42 H 0.12 1.46 8.06 -2.91 -0.02 1.43 16 43 H 0.35 0.56 8.23 -92.71 -0.76 -0.21 16 Total: 0.00 -25.15 373.00 5.20 -19.95 By element: Atomic # 1 Polarization: -5.12 SS G_CDS: 1.02 Total: -4.10 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 4.73 Total: 8.36 kcal Atomic # 7 Polarization: -9.53 SS G_CDS: -0.84 Total: -10.37 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -1.74 Total: -15.71 kcal Atomic # 14 Polarization: -0.15 SS G_CDS: 2.03 Total: 1.88 kcal Total: -25.15 5.20 -19.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801813916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.257 kcal (2) G-P(sol) polarization free energy of solvation -25.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds