Wall clock time and date at job start Tue Mar 31 2020 16:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47504 * 2 1 4 4 C 1.42896 * 113.99964 * 269.99922 * 3 2 1 5 5 C 1.53007 * 109.46665 * 179.97438 * 4 3 2 6 6 O 1.45199 * 109.46817 * 65.00561 * 5 4 3 7 7 C 1.34869 * 116.99582 * 179.97438 * 6 5 4 8 8 O 1.21568 * 120.00101 * 359.97438 * 7 6 5 9 9 C 1.46593 * 119.99760 * 180.27409 * 7 6 5 10 10 C 1.34707 * 119.99953 * 190.92144 * 9 7 6 11 11 C 1.47390 * 119.99665 * 32.08380 * 10 9 7 12 12 C 1.40646 * 119.27682 * 186.51631 * 11 10 9 13 13 C 1.36319 * 119.79803 * 179.74045 * 12 11 10 14 14 C 1.40886 * 118.30041 * 0.50155 * 13 12 11 15 15 C 1.40368 * 121.22490 * 179.79141 * 14 13 12 16 16 C 1.36170 * 119.66192 * 179.97438 * 15 14 13 17 17 C 1.39400 * 120.90767 * 0.02562 * 16 15 14 18 18 C 1.36029 * 121.06577 * 359.97273 * 17 16 15 19 19 C 1.40800 * 119.74262 * 0.02562 * 18 17 16 20 20 N 1.32153 * 119.28167 * 6.79319 * 11 10 9 21 21 C 1.50701 * 109.46737 * 120.00713 * 2 1 3 22 22 N 1.27942 * 120.00101 * 344.98920 * 21 2 1 23 23 Si 1.86802 * 119.99843 * 164.99694 * 21 2 1 24 24 H 1.48503 * 109.47007 * 59.99697 * 23 21 2 25 25 H 1.48504 * 109.46873 * 179.97438 * 23 21 2 26 26 H 1.48497 * 109.47032 * 299.99738 * 23 21 2 27 27 H 1.09005 * 109.46846 * 300.00032 * 1 2 3 28 28 H 1.09005 * 109.46769 * 59.99094 * 1 2 3 29 29 H 1.08997 * 109.47452 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46846 * 239.99968 * 2 1 3 31 31 H 1.09000 * 109.46911 * 60.00441 * 4 3 2 32 32 H 1.09000 * 109.47486 * 300.00029 * 4 3 2 33 33 H 1.08994 * 109.47392 * 304.99872 * 5 4 3 34 34 H 1.08997 * 109.46787 * 185.00024 * 5 4 3 35 35 H 1.08003 * 119.99961 * 10.92100 * 9 7 6 36 36 H 1.08000 * 120.00317 * 212.07722 * 10 9 7 37 37 H 1.08001 * 120.10085 * 0.02562 * 12 11 10 38 38 H 1.07996 * 120.85167 * 180.26427 * 13 12 11 39 39 H 1.07998 * 120.16604 * 359.95221 * 15 14 13 40 40 H 1.08004 * 119.54569 * 179.97438 * 16 15 14 41 41 H 1.08003 * 119.46707 * 179.97438 * 17 16 15 42 42 H 1.08002 * 120.12494 * 180.02562 * 18 17 16 43 43 H 0.97004 * 119.99780 * 180.02562 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.2002 1.8952 -1.3054 5 6 2.7081 3.3334 -1.1845 6 8 4.0234 3.3320 -0.5694 7 6 4.6165 4.5299 -0.3897 8 8 4.0496 5.5473 -0.7383 9 6 5.9476 4.6046 0.2198 10 6 6.4478 5.7958 0.6012 11 6 5.5428 6.8556 1.0811 12 6 6.0616 8.1361 1.3442 13 6 5.2331 9.1256 1.7833 14 6 3.8702 8.8216 1.9702 15 6 2.9638 9.7925 2.4243 16 6 1.6531 9.4641 2.5934 17 6 1.1972 8.1750 2.3220 18 6 2.0465 7.2085 1.8805 19 6 3.4093 7.5086 1.6931 20 7 4.2627 6.5803 1.2600 21 6 2.0323 -0.7106 1.2304 22 7 1.2365 -0.9421 2.2051 23 14 3.8168 -1.2532 1.3325 24 1 4.7023 -0.0667 1.2168 25 1 4.0564 -1.9239 2.6356 26 1 4.1104 -2.1997 0.2267 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.2539 1.8887 -1.8463 32 1 2.9321 1.2953 -1.8464 33 1 2.0194 3.9114 -0.5684 34 1 2.7714 3.7809 -2.1764 35 1 6.5272 3.7047 0.3632 36 1 7.5120 5.9743 0.5554 37 1 7.1123 8.3361 1.1943 38 1 5.6125 10.1161 1.9865 39 1 3.3043 10.7947 2.6389 40 1 0.9574 10.2125 2.9432 41 1 0.1528 7.9399 2.4646 42 1 1.6768 6.2148 1.6745 43 1 1.5599 -1.3992 2.9972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801813919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:55 Heat of formation + Delta-G solvation = -6.791811 kcal Electronic energy + Delta-G solvation = -27182.301777 eV Core-core repulsion = 23274.684046 eV Total energy + Delta-G solvation = -3907.617731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.76087 -40.91682 -39.56642 -38.35587 -37.16733 -36.29928 -34.64775 -34.18573 -32.21623 -31.17399 -30.70000 -30.26021 -26.56052 -25.62950 -24.60362 -24.11226 -23.09503 -22.81861 -20.84453 -20.59894 -19.34104 -18.48906 -18.10379 -18.04645 -17.63676 -17.54848 -16.84364 -16.43385 -16.23875 -15.76955 -15.53347 -15.35387 -15.20804 -14.87111 -14.70230 -14.53348 -14.27273 -14.01444 -13.94934 -13.67814 -13.47428 -13.37180 -13.06053 -12.97292 -12.79615 -12.50205 -12.33010 -12.26502 -12.21181 -11.93631 -11.54536 -11.44457 -11.34173 -11.19224 -10.75334 -10.65340 -10.24559 -9.79055 -9.40574 -8.95752 -0.89765 -0.27295 0.42911 0.72522 1.10079 1.18101 1.40762 1.69299 1.92820 1.95230 2.06480 2.32864 2.75290 3.14486 3.29834 3.58099 3.58858 3.72680 3.83564 3.88313 3.95029 3.98056 4.09859 4.16696 4.20496 4.24510 4.32073 4.39477 4.40634 4.42378 4.48302 4.52728 4.71552 4.72881 4.80711 4.90490 4.94325 5.06418 5.10341 5.10583 5.14760 5.21379 5.46626 5.49851 5.54338 5.62242 5.72215 5.94688 6.17846 6.85468 7.03105 7.15692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 O -0.366 6.366 4 C 0.060 3.940 5 C 0.073 3.927 6 O -0.351 6.351 7 C 0.496 3.504 8 O -0.483 6.483 9 C -0.150 4.150 10 C -0.028 4.028 11 C 0.157 3.843 12 C -0.152 4.152 13 C -0.065 4.065 14 C -0.096 4.096 15 C -0.102 4.102 16 C -0.111 4.111 17 C -0.105 4.105 18 C -0.083 4.083 19 C 0.132 3.868 20 N -0.426 5.426 21 C -0.003 4.003 22 N -0.610 5.610 23 Si 0.930 3.070 24 H -0.226 1.226 25 H -0.248 1.248 26 H -0.237 1.237 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -0.145 -0.937 2.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 O -0.283 6.283 4 C -0.016 4.016 5 C -0.001 4.001 6 O -0.268 6.268 7 C 0.340 3.660 8 O -0.370 6.370 9 C -0.171 4.171 10 C -0.047 4.047 11 C 0.007 3.993 12 C -0.171 4.171 13 C -0.090 4.090 14 C -0.098 4.098 15 C -0.120 4.120 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.102 4.102 19 C 0.008 3.992 20 N -0.134 5.134 21 C -0.253 4.253 22 N -0.225 5.225 23 Si 0.746 3.254 24 H -0.148 1.148 25 H -0.171 1.171 26 H -0.160 1.160 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.837 -0.599 -0.812 2.096 hybrid contribution 0.526 0.534 0.157 0.766 sum 2.363 -0.065 -0.655 2.453 Atomic orbital electron populations 1.22073 0.94144 1.02794 1.02684 1.21168 0.94945 0.83135 0.95155 1.88020 1.86615 1.26551 1.27159 1.22694 1.00041 0.93240 0.85665 1.22992 0.81992 0.96368 0.98709 1.86636 1.32692 1.33448 1.74062 1.21219 0.85844 0.81241 0.77649 1.90876 1.63513 1.35652 1.46911 1.22462 0.93679 0.98845 1.02125 1.22424 0.98895 0.90524 0.92839 1.20116 0.90239 0.92445 0.96475 1.21846 1.01437 0.93020 1.00835 1.21394 0.91987 0.99778 0.95856 1.18972 0.94762 0.94951 1.01131 1.21007 0.93289 0.98706 0.99047 1.21008 0.95926 0.96766 0.99178 1.20952 1.00233 0.93001 0.98320 1.20863 0.90819 1.00278 0.98230 1.18829 0.94162 0.88995 0.97177 1.68179 1.02099 1.34508 1.08610 1.30190 1.05102 0.94909 0.95051 1.68117 1.40977 1.10457 1.02937 0.85767 0.75381 0.82109 0.82172 1.14799 1.17132 1.16025 0.90750 0.92759 0.91476 0.90155 0.90583 0.91666 0.90244 0.89704 0.82907 0.82465 0.84176 0.84117 0.85143 0.85335 0.85133 0.84897 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.10 8.88 37.16 0.33 0.23 16 2 C 0.11 0.06 2.63 -27.88 -0.07 -0.01 16 3 O -0.37 -0.77 9.85 -38.80 -0.38 -1.15 16 4 C 0.06 -0.02 6.14 37.16 0.23 0.21 16 5 C 0.07 0.11 5.86 37.16 0.22 0.33 16 6 O -0.35 -1.23 10.20 -43.74 -0.45 -1.67 16 7 C 0.50 2.06 7.04 34.10 0.24 2.30 16 8 O -0.48 -3.22 13.31 -19.32 -0.26 -3.48 16 9 C -0.15 -0.16 10.00 -37.46 -0.37 -0.54 16 10 C -0.03 -0.01 9.74 -37.11 -0.36 -0.37 16 11 C 0.16 0.49 6.09 -83.10 -0.51 -0.02 16 12 C -0.15 -0.15 9.73 -39.36 -0.38 -0.53 16 13 C -0.06 -0.08 9.88 -39.27 -0.39 -0.47 16 14 C -0.10 -0.31 5.75 -106.70 -0.61 -0.93 16 15 C -0.10 -0.14 9.76 -39.52 -0.39 -0.53 16 16 C -0.11 -0.11 9.96 -39.89 -0.40 -0.51 16 17 C -0.11 -0.18 9.94 -39.94 -0.40 -0.58 16 18 C -0.08 -0.32 9.99 -39.41 -0.39 -0.71 16 19 C 0.13 0.68 6.61 -84.85 -0.56 0.11 16 20 N -0.43 -2.37 6.42 -7.66 -0.05 -2.42 16 21 C 0.00 0.00 5.29 -13.90 -0.07 -0.08 16 22 N -0.61 -1.10 12.60 56.23 0.71 -0.39 16 23 Si 0.93 -0.12 29.56 -169.99 -5.02 -5.14 16 24 H -0.23 -0.26 7.11 56.52 0.40 0.14 16 25 H -0.25 -0.07 7.11 56.52 0.40 0.34 16 26 H -0.24 0.08 7.11 56.52 0.40 0.48 16 27 H 0.07 0.18 7.88 -51.93 -0.41 -0.23 16 28 H 0.05 -0.03 7.87 -51.93 -0.41 -0.44 16 29 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.08 -0.16 7.65 -51.93 -0.40 -0.55 16 31 H 0.08 -0.17 7.87 -51.93 -0.41 -0.58 16 32 H 0.07 -0.11 8.08 -51.93 -0.42 -0.53 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 35 H 0.15 -0.27 8.06 -52.48 -0.42 -0.69 16 36 H 0.16 -0.61 8.06 -52.49 -0.42 -1.03 16 37 H 0.14 -0.33 8.06 -52.49 -0.42 -0.76 16 38 H 0.14 -0.24 8.06 -52.49 -0.42 -0.66 16 39 H 0.13 -0.14 8.06 -52.49 -0.42 -0.57 16 40 H 0.13 -0.18 8.06 -52.48 -0.42 -0.60 16 41 H 0.13 -0.08 8.06 -52.48 -0.42 -0.50 16 42 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 43 H 0.34 0.04 8.23 -40.82 -0.34 -0.29 16 LS Contribution 373.00 15.07 5.62 5.62 Total: 0.00 -8.62 373.00 -9.55 -18.17 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: -5.83 Total: -7.45 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -3.89 Total: -2.08 kcal Atomic # 7 Polarization: -3.47 SS G_CDS: 0.66 Total: -2.81 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -1.09 Total: -6.30 kcal Atomic # 14 Polarization: -0.12 SS G_CDS: -5.02 Total: -5.14 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -8.62 -9.55 -18.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801813919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.375 kcal (2) G-P(sol) polarization free energy of solvation -8.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds