Wall clock time and date at job start Tue Mar 31 2020 15:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.08988 * 109.47409 * 54.99520 * 3 2 1 5 5 C 1.50699 * 109.47206 * 175.00151 * 3 2 1 6 6 H 1.08005 * 120.00028 * 119.99602 * 5 3 2 7 7 C 1.37877 * 120.00021 * 299.99468 * 5 3 2 8 8 N 1.31516 * 119.99655 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00106 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46897 * 90.00366 * 9 7 5 11 11 H 1.48504 * 109.47052 * 210.00062 * 9 7 5 12 12 H 1.48499 * 109.47524 * 330.00087 * 9 7 5 13 13 O 1.45205 * 109.46959 * 294.99500 * 3 2 1 14 14 C 1.34753 * 116.99501 * 89.99960 * 13 3 2 15 15 O 1.21508 * 120.00377 * 0.02562 * 14 13 3 16 16 C 1.47405 * 119.99946 * 180.02562 * 14 13 3 17 17 C 1.39767 * 120.19805 * 359.72843 * 16 14 13 18 18 C 1.37768 * 119.90405 * 179.74144 * 17 16 14 19 19 C 1.38562 * 120.31014 * 0.53288 * 18 17 16 20 20 C 1.38054 * 120.40647 * 359.71778 * 19 18 17 21 21 C 1.38722 * 120.08420 * 0.02600 * 20 19 18 22 22 O 1.35639 * 120.15210 * 179.97438 * 21 20 19 23 23 C 1.35735 * 118.00153 * 4.59875 * 22 21 20 24 24 C 1.39280 * 120.85162 * 281.00458 * 23 22 21 25 25 C 1.37973 * 119.09161 * 179.73285 * 24 23 22 26 26 N 1.31957 * 120.82107 * 0.55200 * 25 24 23 27 27 C 1.31953 * 121.87325 * 359.71835 * 26 25 24 28 28 C 1.37977 * 120.82235 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46893 * 60.00597 * 1 2 3 31 31 H 1.08998 * 109.46738 * 300.00276 * 1 2 3 32 32 H 1.09005 * 109.47069 * 120.00013 * 2 1 3 33 33 H 1.09002 * 109.47448 * 239.99601 * 2 1 3 34 34 H 0.97006 * 119.99648 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.04604 * 359.97438 * 17 16 14 36 36 H 1.08004 * 119.84375 * 180.25248 * 18 17 16 37 37 H 1.08005 * 119.79964 * 179.73660 * 19 18 17 38 38 H 1.07999 * 119.95917 * 179.97438 * 20 19 18 39 39 H 1.08009 * 120.45268 * 359.97438 * 24 23 22 40 40 H 1.07997 * 119.59029 * 180.27771 * 25 24 23 41 41 H 1.07994 * 119.59502 * 179.97438 * 27 26 25 42 42 H 1.08004 * 120.45627 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8799 1.3811 10 1 6.4428 2.1128 2.0836 11 1 6.4390 -0.3111 2.1546 12 1 6.6132 0.8392 0.0270 13 8 1.6560 2.0916 -1.2408 14 6 0.4682 2.7278 -1.2561 15 8 -0.2273 2.7402 -0.2599 16 6 0.0127 3.4087 -2.4815 17 6 0.8119 3.4019 -3.6281 18 6 0.3777 4.0357 -4.7717 19 6 -0.8435 4.6900 -4.7879 20 6 -1.6409 4.7093 -3.6611 21 6 -1.2225 4.0720 -2.5022 22 8 -2.0046 4.0905 -1.3941 23 6 -3.2318 4.6624 -1.4898 24 6 -3.3795 6.0468 -1.4533 25 6 -4.6435 6.5897 -1.5592 26 7 -5.7041 5.8143 -1.6826 27 6 -5.6056 4.4989 -1.7156 28 6 -4.3763 3.8795 -1.6207 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.8293 -0.0617 2.9496 35 1 1.7667 2.8973 -3.6187 36 1 0.9943 4.0263 -5.6585 37 1 -1.1739 5.1878 -5.6877 38 1 -2.5913 5.2218 -3.6816 39 1 -2.5159 6.6869 -1.3475 40 1 -4.7669 7.6623 -1.5364 41 1 -6.4982 3.8996 -1.8173 42 1 -4.3025 2.8023 -1.6488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802219237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:52 Heat of formation + Delta-G solvation = -50.408987 kcal Electronic energy + Delta-G solvation = -27346.154267 eV Core-core repulsion = 23450.300893 eV Total energy + Delta-G solvation = -3895.853374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40730 -39.93540 -38.98112 -37.69919 -35.63723 -33.48517 -32.14874 -31.65631 -31.50198 -31.01159 -30.03921 -27.28316 -24.50238 -24.26083 -23.85181 -23.01928 -22.04540 -20.90899 -19.54402 -19.02547 -17.55015 -17.15584 -16.84577 -16.54065 -16.08983 -15.68704 -15.36090 -15.16435 -14.85592 -14.58189 -14.44135 -14.23287 -13.95052 -13.89138 -13.39110 -13.00305 -12.81856 -12.54208 -12.12307 -11.90713 -11.54747 -11.43052 -11.36677 -11.27062 -11.15625 -10.93339 -10.64363 -10.26919 -10.00168 -9.82074 -9.74582 -9.55292 -9.53571 -9.33462 -9.15272 -8.77753 -8.48303 -8.42909 -6.17495 -4.24497 0.66284 0.75296 0.81153 1.21705 2.84737 3.05728 3.24738 3.30089 3.33542 3.48829 3.60935 3.88909 4.12042 4.32948 4.51205 4.56124 4.63491 4.74265 4.79541 4.94025 5.07272 5.14462 5.19602 5.35267 5.41946 5.43461 5.65452 5.80488 5.83994 6.09391 6.13710 6.23369 6.25936 6.30794 6.34459 6.49564 6.62176 6.90348 6.99399 7.19922 7.25794 7.34149 7.60130 7.62868 7.75836 7.97011 8.17280 8.66545 8.91294 9.40568 10.89286 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.003190 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.285181 B = 8775.352999 C = 9586.537558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.047 0.953 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.353 6.353 14 C 0.493 3.507 15 O -0.495 6.495 16 C -0.137 4.137 17 C -0.026 4.026 18 C -0.164 4.164 19 C -0.056 4.056 20 C -0.214 4.214 21 C 0.176 3.824 22 O -0.222 6.222 23 C 0.134 3.866 24 C -0.188 4.188 25 C 0.113 3.887 26 N -0.487 5.487 27 C 0.114 3.886 28 C -0.175 4.175 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.151 0.849 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.165 9.205 -13.224 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.270 6.270 14 C 0.337 3.663 15 O -0.384 6.384 16 C -0.139 4.139 17 C -0.044 4.044 18 C -0.183 4.183 19 C -0.074 4.074 20 C -0.232 4.232 21 C 0.131 3.869 22 O -0.132 6.132 23 C 0.083 3.917 24 C -0.209 4.209 25 C -0.044 4.044 26 N -0.197 5.197 27 C -0.042 4.042 28 C -0.195 4.195 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.169 0.831 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.162 0.838 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.079 9.373 -12.578 21.078 hybrid contribution 1.678 -0.415 0.366 1.767 sum -12.401 8.958 -12.211 19.574 Atomic orbital electron populations 1.21852 0.98378 0.98907 1.00813 1.22016 0.92632 0.99350 1.03311 1.20671 0.94938 0.88715 0.78581 0.93498 1.21034 0.89644 1.38935 1.06240 0.91339 1.24884 0.99194 0.94792 0.95092 1.69897 1.35353 1.37804 1.09461 0.86291 0.83941 0.77677 0.78328 1.20435 1.20967 1.19599 1.86514 1.33595 1.62679 1.44185 1.20584 0.81338 0.77392 0.87018 1.90833 1.55117 1.57821 1.34650 1.18892 0.94345 1.05296 0.95346 1.21514 0.98727 0.93966 0.90201 1.21117 0.97271 1.01037 0.98839 1.21116 0.93393 0.95756 0.97142 1.21179 1.02688 1.06023 0.93338 1.19070 0.89327 0.93419 0.85081 1.84601 1.23460 1.73615 1.31557 1.19138 0.84821 0.91313 0.96391 1.22588 1.00646 0.94767 1.02863 1.22702 0.86933 1.00417 0.94329 1.67706 1.33479 1.06133 1.12386 1.22728 0.96605 0.90606 0.94294 1.22450 0.92695 1.02533 1.01838 0.94899 0.94950 0.92815 0.87352 0.93994 0.92406 0.83110 0.84905 0.85224 0.85120 0.83802 0.81982 0.81855 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.56 37.16 0.32 -2.88 16 2 C -0.14 -3.39 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.97 2.25 -27.89 -0.06 5.91 16 4 H 0.05 1.40 7.16 -51.94 -0.37 1.03 16 5 C -0.52 -14.51 8.90 -34.44 -0.31 -14.82 16 6 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.10 11.29 55.43 0.63 -24.48 16 9 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 O -0.35 -8.42 9.06 -40.64 -0.37 -8.79 16 14 C 0.49 10.81 6.34 34.46 0.22 11.03 16 15 O -0.49 -11.99 12.35 -26.59 -0.33 -12.32 16 16 C -0.14 -2.37 5.89 -104.85 -0.62 -2.99 16 17 C -0.03 -0.37 9.61 -39.18 -0.38 -0.74 16 18 C -0.16 -1.77 10.02 -39.63 -0.40 -2.16 16 19 C -0.06 -0.56 10.03 -39.53 -0.40 -0.95 16 20 C -0.21 -2.53 9.00 -39.47 -0.36 -2.88 16 21 C 0.18 2.71 6.66 -38.66 -0.26 2.45 16 22 O -0.22 -3.70 8.09 -24.18 -0.20 -3.90 16 23 C 0.13 1.76 4.53 -38.81 -0.18 1.58 16 24 C -0.19 -2.02 8.92 -39.29 -0.35 -2.37 16 25 C 0.11 1.06 11.17 -17.59 -0.20 0.86 16 26 N -0.49 -5.18 10.36 -13.33 -0.14 -5.31 16 27 C 0.11 1.10 11.17 -17.60 -0.20 0.91 16 28 C -0.17 -1.96 10.08 -39.29 -0.40 -2.36 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.71 6.06 -51.93 -0.31 0.39 16 31 H 0.05 1.27 7.79 -51.93 -0.40 0.87 16 32 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.15 2.09 7.61 -52.49 -0.40 1.69 16 36 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 37 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.13 1.35 6.19 -52.49 -0.32 1.03 16 39 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -32.58 357.44 -8.88 -41.46 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.05 Total: 3.31 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -3.79 Total: -11.33 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.49 Total: -29.79 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.89 Total: -25.00 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.58 -8.88 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802219237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.947 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds