Wall clock time and date at job start Tue Mar 31 2020 15:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.08988 * 109.47409 * 54.99520 * 3 2 1 5 5 C 1.50699 * 109.47206 * 175.00151 * 3 2 1 6 6 H 1.08005 * 120.00028 * 119.99602 * 5 3 2 7 7 C 1.37877 * 120.00021 * 299.99468 * 5 3 2 8 8 N 1.31516 * 119.99655 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00106 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46897 * 90.00366 * 9 7 5 11 11 H 1.48504 * 109.47052 * 210.00062 * 9 7 5 12 12 H 1.48499 * 109.47524 * 330.00087 * 9 7 5 13 13 O 1.45205 * 109.46959 * 294.99500 * 3 2 1 14 14 C 1.34753 * 116.99501 * 89.99960 * 13 3 2 15 15 O 1.21508 * 120.00377 * 0.02562 * 14 13 3 16 16 C 1.47405 * 119.99946 * 180.02562 * 14 13 3 17 17 C 1.39767 * 120.19805 * 359.72843 * 16 14 13 18 18 C 1.37768 * 119.90405 * 179.74144 * 17 16 14 19 19 C 1.38562 * 120.31014 * 0.53288 * 18 17 16 20 20 C 1.38054 * 120.40647 * 359.71778 * 19 18 17 21 21 C 1.38722 * 120.08420 * 0.02600 * 20 19 18 22 22 O 1.35639 * 120.15210 * 179.97438 * 21 20 19 23 23 C 1.35735 * 118.00153 * 4.59875 * 22 21 20 24 24 C 1.39280 * 120.85162 * 281.00458 * 23 22 21 25 25 C 1.37973 * 119.09161 * 179.73285 * 24 23 22 26 26 N 1.31957 * 120.82107 * 0.55200 * 25 24 23 27 27 C 1.31953 * 121.87325 * 359.71835 * 26 25 24 28 28 C 1.37977 * 120.82235 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46893 * 60.00597 * 1 2 3 31 31 H 1.08998 * 109.46738 * 300.00276 * 1 2 3 32 32 H 1.09005 * 109.47069 * 120.00013 * 2 1 3 33 33 H 1.09002 * 109.47448 * 239.99601 * 2 1 3 34 34 H 0.97006 * 119.99648 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.04604 * 359.97438 * 17 16 14 36 36 H 1.08004 * 119.84375 * 180.25248 * 18 17 16 37 37 H 1.08005 * 119.79964 * 179.73660 * 19 18 17 38 38 H 1.07999 * 119.95917 * 179.97438 * 20 19 18 39 39 H 1.08009 * 120.45268 * 359.97438 * 24 23 22 40 40 H 1.07997 * 119.59029 * 180.27771 * 25 24 23 41 41 H 1.07994 * 119.59502 * 179.97438 * 27 26 25 42 42 H 1.08004 * 120.45627 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8799 1.3811 10 1 6.4428 2.1128 2.0836 11 1 6.4390 -0.3111 2.1546 12 1 6.6132 0.8392 0.0270 13 8 1.6560 2.0916 -1.2408 14 6 0.4682 2.7278 -1.2561 15 8 -0.2273 2.7402 -0.2599 16 6 0.0127 3.4087 -2.4815 17 6 0.8119 3.4019 -3.6281 18 6 0.3777 4.0357 -4.7717 19 6 -0.8435 4.6900 -4.7879 20 6 -1.6409 4.7093 -3.6611 21 6 -1.2225 4.0720 -2.5022 22 8 -2.0046 4.0905 -1.3941 23 6 -3.2318 4.6624 -1.4898 24 6 -3.3795 6.0468 -1.4533 25 6 -4.6435 6.5897 -1.5592 26 7 -5.7041 5.8143 -1.6826 27 6 -5.6056 4.4989 -1.7156 28 6 -4.3763 3.8795 -1.6207 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.8293 -0.0617 2.9496 35 1 1.7667 2.8973 -3.6187 36 1 0.9943 4.0263 -5.6585 37 1 -1.1739 5.1878 -5.6877 38 1 -2.5913 5.2218 -3.6816 39 1 -2.5159 6.6869 -1.3475 40 1 -4.7669 7.6623 -1.5364 41 1 -6.4982 3.8996 -1.8173 42 1 -4.3025 2.8023 -1.6488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802219237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:52 Heat of formation + Delta-G solvation = -68.066173 kcal Electronic energy + Delta-G solvation = -27346.919940 eV Core-core repulsion = 23450.300893 eV Total energy + Delta-G solvation = -3896.619047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.42279 -41.29236 -40.26138 -38.73283 -37.50550 -35.50083 -33.47549 -33.01890 -32.44326 -32.19707 -31.04528 -29.33157 -25.93340 -25.25537 -24.86882 -24.62014 -23.03907 -22.46872 -21.39535 -20.03839 -19.13555 -18.51048 -18.07599 -17.96657 -17.30014 -17.04590 -16.88829 -16.48299 -16.16200 -15.75121 -15.51681 -15.37433 -14.95881 -14.76995 -14.73883 -14.66460 -14.31285 -14.01188 -13.44931 -13.35900 -13.30348 -13.10273 -12.90636 -12.81407 -12.57955 -12.46131 -12.26047 -12.13643 -11.78291 -11.46420 -11.26577 -10.82704 -10.82518 -10.61732 -10.54460 -10.32781 -10.20300 -9.49601 -8.28199 -6.45403 -0.34345 -0.20745 -0.00219 0.23680 1.40673 1.42971 1.54455 1.65559 1.89061 1.98540 2.41074 2.65948 2.70544 3.01336 3.44378 3.62714 3.66627 3.79838 3.81064 3.95566 3.99880 4.11985 4.27769 4.30293 4.34392 4.35725 4.47614 4.54424 4.66531 4.73530 4.78740 4.83984 4.98930 5.03477 5.07592 5.18804 5.23575 5.32679 5.37477 5.45673 5.49914 5.64430 5.71218 5.95396 6.10099 6.33073 6.60002 6.82856 7.00310 7.26376 8.78897 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.003190 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.285181 B = 8775.352999 C = 9586.537558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 C 0.227 3.773 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.273 1.273 11 H -0.275 1.275 12 H -0.261 1.261 13 O -0.358 6.358 14 C 0.487 3.513 15 O -0.531 6.531 16 C -0.178 4.178 17 C -0.034 4.034 18 C -0.151 4.151 19 C -0.032 4.032 20 C -0.208 4.208 21 C 0.163 3.837 22 O -0.258 6.258 23 C 0.106 3.894 24 C -0.192 4.192 25 C 0.121 3.879 26 N -0.500 5.500 27 C 0.122 3.878 28 C -0.186 4.186 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.032 0.968 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.270 0.730 35 H 0.144 0.856 36 H 0.172 0.828 37 H 0.178 0.822 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.196 0.804 41 H 0.194 0.806 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 10.578 -16.182 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 C 0.174 3.826 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.199 1.199 11 H -0.200 1.200 12 H -0.185 1.185 13 O -0.275 6.275 14 C 0.334 3.666 15 O -0.422 6.422 16 C -0.179 4.179 17 C -0.052 4.052 18 C -0.168 4.168 19 C -0.050 4.050 20 C -0.226 4.226 21 C 0.119 3.881 22 O -0.169 6.169 23 C 0.056 3.944 24 C -0.212 4.212 25 C -0.035 4.035 26 N -0.210 5.210 27 C -0.034 4.034 28 C -0.206 4.206 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.162 0.838 36 H 0.190 0.810 37 H 0.195 0.805 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.213 0.787 41 H 0.211 0.789 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.618 10.754 -15.558 23.903 hybrid contribution 1.708 -0.742 1.220 2.226 sum -12.909 10.012 -14.338 21.736 Atomic orbital electron populations 1.21680 0.96580 1.00413 0.99755 1.21856 0.94167 0.98121 1.02420 1.20361 0.94635 0.89168 0.78424 0.98066 1.21320 0.90268 1.40004 1.07019 0.91430 1.25843 1.04414 0.93826 0.94296 1.70029 1.37518 1.37910 1.09870 0.85182 0.77460 0.77970 0.78794 1.19892 1.19986 1.18471 1.86495 1.35213 1.63280 1.42535 1.21497 0.80036 0.76609 0.88505 1.90795 1.55727 1.59263 1.36464 1.18791 0.96586 1.08168 0.94390 1.21594 0.98296 0.94750 0.90538 1.21526 0.97803 0.99059 0.98456 1.21699 0.92013 0.93512 0.97726 1.21419 1.03555 1.05166 0.92483 1.19312 0.88795 0.93838 0.86157 1.84550 1.25025 1.74407 1.32882 1.19530 0.84057 0.92598 0.98241 1.22688 1.01645 0.93797 1.03033 1.23202 0.85919 1.01821 0.92526 1.67814 1.33856 1.06509 1.12791 1.23165 0.96856 0.90661 0.92724 1.22556 0.92921 1.02579 1.02571 0.91881 0.94975 0.94902 0.89422 0.93370 0.92038 0.83777 0.81014 0.80458 0.83430 0.83208 0.78736 0.78913 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.56 71.98 0.62 -5.36 16 2 C -0.13 -6.72 5.49 30.59 0.17 -6.55 16 3 C 0.23 12.95 2.25 29.85 0.07 13.02 16 4 H 0.00 0.10 7.16 -2.39 -0.02 0.08 16 5 C -0.55 -31.87 8.90 25.60 0.23 -31.64 16 6 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.92 -53.56 11.29 21.45 0.24 -53.32 16 9 Si 0.98 43.45 29.54 68.60 2.03 45.48 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 O -0.36 -18.25 9.06 -56.63 -0.51 -18.77 16 14 C 0.49 22.95 6.34 70.24 0.45 23.39 16 15 O -0.53 -27.99 12.35 26.81 0.33 -27.66 16 16 C -0.18 -6.40 5.89 -20.01 -0.12 -6.52 16 17 C -0.03 -0.93 9.61 22.53 0.22 -0.72 16 18 C -0.15 -2.72 10.02 22.24 0.22 -2.49 16 19 C -0.03 -0.50 10.03 22.30 0.22 -0.27 16 20 C -0.21 -4.48 9.00 22.34 0.20 -4.28 16 21 C 0.16 5.14 6.66 22.86 0.15 5.30 16 22 O -0.26 -9.07 8.09 -10.22 -0.08 -9.15 16 23 C 0.11 2.82 4.53 22.77 0.10 2.92 16 24 C -0.19 -3.97 8.92 22.46 0.20 -3.76 16 25 C 0.12 2.03 11.17 84.61 0.95 2.97 16 26 N -0.50 -9.55 10.36 -196.10 -2.03 -11.59 16 27 C 0.12 2.17 11.17 84.61 0.95 3.12 16 28 C -0.19 -4.17 10.08 22.46 0.23 -3.94 16 29 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.03 1.48 6.06 -2.39 -0.01 1.46 16 31 H 0.03 1.64 7.79 -2.39 -0.02 1.62 16 32 H 0.09 4.99 5.95 -2.38 -0.01 4.97 16 33 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 35 H 0.14 4.08 7.61 -2.91 -0.02 4.06 16 36 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.15 2.67 6.19 -2.91 -0.02 2.65 16 39 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.20 1.84 8.06 -2.91 -0.02 1.81 16 41 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -76.87 357.44 6.31 -70.57 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 1.04 Total: 17.92 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 5.29 Total: -13.49 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -1.79 Total: -64.90 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -0.26 Total: -55.58 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -76.87 6.31 -70.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802219237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.500 kcal (2) G-P(sol) polarization free energy of solvation -76.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds