Wall clock time and date at job start Tue Mar 31 2020 14:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47318 * 2 1 4 4 N 1.30172 * 126.80292 * 270.02384 * 3 2 1 5 5 O 1.20924 * 111.60656 * 179.97438 * 4 3 2 6 6 C 1.34047 * 111.56319 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.77182 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47444 * 269.96154 * 7 6 5 9 9 C 1.35447 * 106.44898 * 0.02562 * 6 5 4 10 10 C 1.50701 * 128.00779 * 180.26015 * 9 6 5 11 11 C 1.50699 * 109.47112 * 269.67457 * 10 9 6 12 12 O 1.20828 * 120.00111 * 359.97438 * 11 10 9 13 13 O 1.34223 * 119.99977 * 180.02562 * 11 10 9 14 14 C 1.45205 * 116.99963 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47006 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46799 * 179.97438 * 15 14 13 17 17 S 1.81001 * 109.46892 * 180.02562 * 16 15 14 18 18 C 1.76203 * 99.99961 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00032 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00013 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99546 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46548 * 90.00334 * 22 20 18 24 24 H 1.48493 * 109.47064 * 210.00380 * 22 20 18 25 25 H 1.48498 * 109.46998 * 330.00823 * 22 20 18 26 26 H 1.08995 * 109.47528 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46927 * 300.00106 * 1 2 3 28 28 H 1.09006 * 109.47281 * 59.99512 * 1 2 3 29 29 H 1.08997 * 109.47196 * 239.99952 * 2 1 3 30 30 H 1.09002 * 109.47603 * 119.99799 * 2 1 3 31 31 H 1.08998 * 109.47545 * 29.96462 * 7 6 5 32 32 H 1.09001 * 109.47073 * 149.96550 * 7 6 5 33 33 H 1.09007 * 109.46764 * 300.00552 * 8 7 6 34 34 H 1.09001 * 109.46661 * 60.00144 * 8 7 6 35 35 H 1.08995 * 109.47374 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.47073 * 29.67351 * 10 9 6 37 37 H 1.09002 * 109.47300 * 149.67174 * 10 9 6 38 38 H 1.08993 * 109.47387 * 299.99788 * 14 13 11 39 39 H 1.08999 * 109.46830 * 60.00174 * 14 13 11 40 40 H 1.08993 * 109.47242 * 300.00327 * 15 14 13 41 41 H 1.08999 * 109.46816 * 60.00616 * 15 14 13 42 42 H 1.09002 * 109.47350 * 300.00303 * 16 15 14 43 43 H 1.09004 * 109.47272 * 60.00624 * 16 15 14 44 44 H 0.97010 * 119.99578 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2919 2.1562 -1.0423 5 8 2.6805 3.2565 -0.7253 6 6 2.7297 3.3968 0.6069 7 6 3.1620 4.6225 1.3696 8 6 4.6685 4.5570 1.6289 9 6 2.3142 2.2195 1.1321 10 6 2.1774 1.8490 2.5864 11 6 3.4699 1.2477 3.0754 12 8 4.4059 1.1316 2.3202 13 8 3.5809 0.8404 4.3495 14 6 4.8547 0.2705 4.7507 15 6 4.7915 -0.1320 6.2255 16 6 6.1335 -0.7331 6.6480 17 16 6.0584 -1.2099 8.3925 18 6 7.6858 -1.8512 8.6047 19 1 8.3764 -1.8572 7.7744 20 6 8.0806 -2.3478 9.8393 21 7 7.2390 -2.3400 10.8514 22 14 9.8056 -3.0284 10.0641 23 1 10.7169 -1.9361 10.4903 24 1 9.7873 -4.0908 11.1014 25 1 10.2839 -3.5990 8.7793 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.9323 5.5137 0.7856 32 1 2.6312 4.6646 2.3207 33 1 4.8981 3.6657 2.2130 34 1 5.1993 4.5149 0.6778 35 1 4.9810 5.4433 2.1810 36 1 1.9487 2.7415 3.1688 37 1 1.3723 1.1233 2.7024 38 1 5.0671 -0.6088 4.1426 39 1 5.6438 1.0091 4.6096 40 1 4.5793 0.7474 6.8333 41 1 4.0024 -0.8705 6.3670 42 1 6.3452 -1.6127 6.0401 43 1 6.9229 0.0051 6.5065 44 1 7.5148 -2.6874 11.7142 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805488887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:27 Heat of formation + Delta-G solvation = -62.561811 kcal Electronic energy + Delta-G solvation = -24811.924590 eV Core-core repulsion = 21050.988181 eV Total energy + Delta-G solvation = -3760.936409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.22646 -40.55234 -37.10167 -36.00640 -35.25930 -33.57826 -32.47218 -32.33556 -31.05690 -29.23825 -26.54143 -25.47189 -24.97204 -24.08427 -22.65790 -21.38738 -20.89458 -20.05621 -18.10397 -17.64811 -17.44568 -17.28813 -16.78745 -16.35137 -15.55237 -15.12289 -14.84198 -14.67761 -14.54146 -14.36846 -14.02092 -13.56787 -13.38951 -13.28728 -13.13175 -12.87363 -12.71017 -12.48723 -12.14571 -12.12932 -11.83090 -11.74470 -11.55969 -11.38855 -11.16956 -11.07451 -11.01786 -10.94541 -10.74741 -10.64170 -10.33749 -10.17227 -9.68068 -9.50466 -9.10129 -8.39052 -6.59532 -6.27385 -3.98580 1.12004 1.79178 2.04425 2.60648 2.79630 3.19510 3.20588 3.27088 3.51926 3.78975 4.01242 4.17518 4.28017 4.40841 4.62992 4.65425 4.75959 4.83147 4.88122 4.93415 4.98848 5.05562 5.06897 5.09553 5.13740 5.23260 5.35046 5.38781 5.44006 5.45090 5.48775 5.56922 5.63776 5.69187 5.72994 5.82682 5.87322 5.89450 6.12061 6.38958 6.40616 6.63076 7.56623 7.62774 8.00248 8.32295 9.19122 10.80734 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.001977 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.241069 B =14161.792475 C =14716.512068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C 0.042 3.958 4 N -0.365 5.365 5 O 0.099 5.901 6 C -0.006 4.006 7 C -0.045 4.045 8 C -0.152 4.152 9 C -0.192 4.192 10 C -0.034 4.034 11 C 0.458 3.542 12 O -0.499 6.499 13 O -0.354 6.354 14 C 0.073 3.927 15 C -0.098 4.098 16 C -0.115 4.115 17 S -0.124 6.124 18 C -0.518 4.518 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.869 5.869 22 Si 0.919 3.081 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.962 12.303 -19.838 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.118 4.118 4 N -0.070 5.070 5 O 0.035 5.965 6 C -0.070 4.070 7 C -0.083 4.083 8 C -0.210 4.210 9 C -0.196 4.196 10 C -0.072 4.072 11 C 0.300 3.700 12 O -0.386 6.386 13 O -0.271 6.271 14 C -0.001 4.001 15 C -0.136 4.136 16 C -0.263 4.263 17 S 0.105 5.895 18 C -0.667 4.667 19 H 0.091 0.909 20 C -0.138 4.138 21 N -0.505 5.505 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.580 12.089 -20.424 27.854 hybrid contribution 2.298 -0.727 0.031 2.411 sum -12.282 11.362 -20.393 26.378 Atomic orbital electron populations 1.21732 0.93671 1.02558 1.02436 1.19971 0.96461 0.88182 1.04116 1.23341 1.01313 0.98938 0.88203 1.73827 1.16696 0.92714 1.23765 1.84812 1.62565 1.26859 1.22241 1.24269 1.00181 0.98655 0.83911 1.20190 0.97922 0.91709 0.98505 1.21796 0.93290 1.03094 1.02812 1.20162 1.09767 0.94068 0.95632 1.19463 0.94319 1.03437 0.90010 1.23436 0.90130 0.75883 0.80545 1.90696 1.40363 1.51437 1.56147 1.86471 1.39877 1.71970 1.28806 1.23282 0.81877 0.98031 0.96954 1.21286 0.98370 1.02133 0.91810 1.23180 0.97642 1.02097 1.03400 1.84647 1.21790 1.79969 1.03135 1.22692 0.97580 1.46905 0.99478 0.90852 1.25022 0.98500 0.95319 0.94927 1.70018 1.34976 1.43806 1.01659 0.86147 0.82471 0.78661 0.78154 1.20227 1.20714 1.19661 0.91398 0.92210 0.92368 0.89852 0.89680 0.89114 0.88532 0.91728 0.91974 0.91099 0.86322 0.86259 0.91179 0.91169 0.90313 0.90328 0.91763 0.91757 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.15 0.37 -0.58 16 2 C -0.05 -0.42 6.44 -27.89 -0.18 -0.60 16 3 C 0.04 0.45 6.58 -82.10 -0.54 -0.09 16 4 N -0.36 -4.49 12.07 33.42 0.40 -4.08 16 5 O 0.10 1.11 11.20 17.16 0.19 1.30 16 6 C -0.01 -0.06 6.74 -35.31 -0.24 -0.30 16 7 C -0.05 -0.28 6.35 -27.88 -0.18 -0.45 16 8 C -0.15 -1.12 9.90 37.16 0.37 -0.75 16 9 C -0.19 -1.85 4.82 -104.42 -0.50 -2.35 16 10 C -0.03 -0.27 6.14 -29.03 -0.18 -0.45 16 11 C 0.46 5.28 7.95 36.01 0.29 5.56 16 12 O -0.50 -7.29 15.21 -18.75 -0.29 -7.57 16 13 O -0.35 -4.41 10.22 -39.24 -0.40 -4.81 16 14 C 0.07 1.00 5.47 37.16 0.20 1.21 16 15 C -0.10 -1.52 5.60 -26.73 -0.15 -1.67 16 16 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 17 S -0.12 -3.15 21.44 -107.50 -2.30 -5.46 16 18 C -0.52 -14.64 9.50 30.94 0.29 -14.35 16 19 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 20 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 21 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 22 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.41 7.44 -51.93 -0.39 0.03 16 33 H 0.06 0.62 7.57 -51.93 -0.39 0.23 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.12 0.61 7.44 -51.93 -0.39 0.23 16 37 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 39 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.24 8.14 -51.91 -0.42 0.81 16 43 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -33.67 391.44 -8.17 -41.84 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -7.05 Total: -3.60 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -0.33 Total: -14.93 kcal Atomic # 7 Polarization: -30.09 SS G_CDS: 1.14 Total: -28.95 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.49 Total: -11.08 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.30 Total: -5.46 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.67 -8.17 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805488887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.726 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds