Wall clock time and date at job start Tue Mar 31 2020 14:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47318 * 2 1 4 4 N 1.30172 * 126.80292 * 270.02384 * 3 2 1 5 5 O 1.20924 * 111.60656 * 179.97438 * 4 3 2 6 6 C 1.34047 * 111.56319 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.77182 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47444 * 269.96154 * 7 6 5 9 9 C 1.35447 * 106.44898 * 0.02562 * 6 5 4 10 10 C 1.50701 * 128.00779 * 180.26015 * 9 6 5 11 11 C 1.50699 * 109.47112 * 269.67457 * 10 9 6 12 12 O 1.20828 * 120.00111 * 359.97438 * 11 10 9 13 13 O 1.34223 * 119.99977 * 180.02562 * 11 10 9 14 14 C 1.45205 * 116.99963 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47006 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46799 * 179.97438 * 15 14 13 17 17 S 1.81001 * 109.46892 * 180.02562 * 16 15 14 18 18 C 1.76203 * 99.99961 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00032 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00013 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99546 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46548 * 90.00334 * 22 20 18 24 24 H 1.48493 * 109.47064 * 210.00380 * 22 20 18 25 25 H 1.48498 * 109.46998 * 330.00823 * 22 20 18 26 26 H 1.08995 * 109.47528 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46927 * 300.00106 * 1 2 3 28 28 H 1.09006 * 109.47281 * 59.99512 * 1 2 3 29 29 H 1.08997 * 109.47196 * 239.99952 * 2 1 3 30 30 H 1.09002 * 109.47603 * 119.99799 * 2 1 3 31 31 H 1.08998 * 109.47545 * 29.96462 * 7 6 5 32 32 H 1.09001 * 109.47073 * 149.96550 * 7 6 5 33 33 H 1.09007 * 109.46764 * 300.00552 * 8 7 6 34 34 H 1.09001 * 109.46661 * 60.00144 * 8 7 6 35 35 H 1.08995 * 109.47374 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.47073 * 29.67351 * 10 9 6 37 37 H 1.09002 * 109.47300 * 149.67174 * 10 9 6 38 38 H 1.08993 * 109.47387 * 299.99788 * 14 13 11 39 39 H 1.08999 * 109.46830 * 60.00174 * 14 13 11 40 40 H 1.08993 * 109.47242 * 300.00327 * 15 14 13 41 41 H 1.08999 * 109.46816 * 60.00616 * 15 14 13 42 42 H 1.09002 * 109.47350 * 300.00303 * 16 15 14 43 43 H 1.09004 * 109.47272 * 60.00624 * 16 15 14 44 44 H 0.97010 * 119.99578 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2919 2.1562 -1.0423 5 8 2.6805 3.2565 -0.7253 6 6 2.7297 3.3968 0.6069 7 6 3.1620 4.6225 1.3696 8 6 4.6685 4.5570 1.6289 9 6 2.3142 2.2195 1.1321 10 6 2.1774 1.8490 2.5864 11 6 3.4699 1.2477 3.0754 12 8 4.4059 1.1316 2.3202 13 8 3.5809 0.8404 4.3495 14 6 4.8547 0.2705 4.7507 15 6 4.7915 -0.1320 6.2255 16 6 6.1335 -0.7331 6.6480 17 16 6.0584 -1.2099 8.3925 18 6 7.6858 -1.8512 8.6047 19 1 8.3764 -1.8572 7.7744 20 6 8.0806 -2.3478 9.8393 21 7 7.2390 -2.3400 10.8514 22 14 9.8056 -3.0284 10.0641 23 1 10.7169 -1.9361 10.4903 24 1 9.7873 -4.0908 11.1014 25 1 10.2839 -3.5990 8.7793 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.9323 5.5137 0.7856 32 1 2.6312 4.6646 2.3207 33 1 4.8981 3.6657 2.2130 34 1 5.1993 4.5149 0.6778 35 1 4.9810 5.4433 2.1810 36 1 1.9487 2.7415 3.1688 37 1 1.3723 1.1233 2.7024 38 1 5.0671 -0.6088 4.1426 39 1 5.6438 1.0091 4.6096 40 1 4.5793 0.7474 6.8333 41 1 4.0024 -0.8705 6.3670 42 1 6.3452 -1.6127 6.0401 43 1 6.9229 0.0051 6.5065 44 1 7.5148 -2.6874 11.7142 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805488887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:27 Heat of formation + Delta-G solvation = -80.315973 kcal Electronic energy + Delta-G solvation = -24812.694469 eV Core-core repulsion = 21050.988181 eV Total energy + Delta-G solvation = -3761.706287 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.99553 -41.51990 -38.06094 -36.78883 -35.87962 -34.90428 -34.58214 -32.96737 -31.77255 -29.99096 -28.08823 -27.31944 -25.60550 -24.70183 -23.52882 -22.67841 -21.73434 -20.74603 -19.58328 -18.90228 -18.45935 -18.12693 -17.76201 -17.31438 -16.89920 -16.30008 -16.13095 -15.89562 -15.54849 -15.11592 -14.95687 -14.63258 -14.32997 -14.21513 -14.06012 -13.81030 -13.74042 -13.50538 -13.27649 -13.11518 -12.94999 -12.70069 -12.62350 -12.46980 -12.38943 -12.36212 -12.33270 -12.08441 -11.75643 -11.69953 -11.49268 -11.45518 -11.15086 -10.92570 -10.36296 -10.24482 -8.67715 -8.38406 -6.14492 0.39507 0.99816 1.15937 1.30360 1.39357 1.47039 1.58857 1.93448 2.13325 2.27143 2.96198 3.09895 3.28718 3.37051 3.60204 3.74741 3.85488 3.86702 3.99796 4.07966 4.16095 4.22207 4.27174 4.29963 4.32822 4.37221 4.42242 4.50471 4.58066 4.63613 4.69030 4.83013 4.95262 4.95801 4.99454 5.03069 5.03236 5.10964 5.15578 5.28365 5.31843 5.39767 5.47291 6.17508 6.70335 7.04343 7.25410 8.70805 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.001977 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.241069 B =14161.792475 C =14716.512068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.032 3.968 4 N -0.398 5.398 5 O 0.082 5.918 6 C -0.005 4.005 7 C -0.044 4.044 8 C -0.150 4.150 9 C -0.204 4.204 10 C -0.028 4.028 11 C 0.461 3.539 12 O -0.534 6.534 13 O -0.352 6.352 14 C 0.082 3.918 15 C -0.085 4.085 16 C -0.092 4.092 17 S -0.182 6.182 18 C -0.541 4.541 19 H 0.073 0.927 20 C 0.016 3.984 21 N -0.905 5.905 22 Si 0.993 3.007 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.265 1.265 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.153 0.847 37 H 0.144 0.856 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.371 13.007 -19.863 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 C -0.127 4.127 4 N -0.106 5.106 5 O 0.022 5.978 6 C -0.069 4.069 7 C -0.082 4.082 8 C -0.208 4.208 9 C -0.208 4.208 10 C -0.065 4.065 11 C 0.305 3.695 12 O -0.423 6.423 13 O -0.269 6.269 14 C 0.007 3.993 15 C -0.124 4.124 16 C -0.241 4.241 17 S 0.046 5.954 18 C -0.688 4.688 19 H 0.091 0.909 20 C -0.189 4.189 21 N -0.542 5.542 22 Si 0.815 3.185 23 H -0.193 1.193 24 H -0.199 1.199 25 H -0.189 1.189 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.141 0.859 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.004 12.815 -20.452 28.419 hybrid contribution 2.388 -0.893 -0.039 2.550 sum -12.616 11.921 -20.492 26.855 Atomic orbital electron populations 1.21701 0.92040 1.03526 1.02504 1.20076 0.97839 0.87052 1.03973 1.23817 1.00681 0.99731 0.88478 1.73815 1.18364 0.93455 1.24974 1.84767 1.62902 1.26693 1.23464 1.24918 0.98920 0.99758 0.83283 1.20408 0.97073 0.91116 0.99590 1.21767 0.94219 1.02808 1.01969 1.20405 1.10103 0.93976 0.96272 1.19654 0.92604 1.05258 0.88990 1.24169 0.90925 0.74832 0.79589 1.90696 1.41916 1.52916 1.56775 1.86464 1.38845 1.71979 1.29613 1.22980 0.82752 0.98233 0.95367 1.21102 0.95988 1.02040 0.93243 1.23076 1.00139 1.02330 0.98598 1.84597 1.21499 1.80347 1.08937 1.23048 0.98517 1.47357 0.99925 0.90907 1.26042 1.02973 0.95392 0.94472 1.70141 1.37165 1.44638 1.02233 0.85032 0.76942 0.78158 0.78390 1.19268 1.19891 1.18889 0.89969 0.91140 0.93264 0.90586 0.89202 0.87077 0.85926 0.94165 0.93250 0.89099 0.82974 0.83782 0.91276 0.90989 0.89956 0.90146 0.91603 0.91438 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 71.98 0.71 -0.91 16 2 C -0.05 -0.83 6.44 29.85 0.19 -0.64 16 3 C 0.03 0.67 6.58 43.58 0.29 0.96 16 4 N -0.40 -9.91 12.07 -49.55 -0.60 -10.50 16 5 O 0.08 1.86 11.20 71.56 0.80 2.66 16 6 C -0.01 -0.09 6.74 25.04 0.17 0.08 16 7 C -0.04 -0.43 6.35 29.85 0.19 -0.24 16 8 C -0.15 -2.00 9.90 71.98 0.71 -1.28 16 9 C -0.20 -3.59 4.82 -19.73 -0.10 -3.69 16 10 C -0.03 -0.35 6.14 29.10 0.18 -0.17 16 11 C 0.46 9.71 7.95 71.24 0.57 10.28 16 12 O -0.53 -15.14 15.21 21.96 0.33 -14.81 16 13 O -0.35 -7.99 10.22 -51.35 -0.52 -8.51 16 14 C 0.08 2.12 5.47 71.98 0.39 2.51 16 15 C -0.09 -2.54 5.60 30.59 0.17 -2.37 16 16 C -0.09 -3.54 5.67 71.98 0.41 -3.13 16 17 S -0.18 -9.41 21.44 -56.49 -1.21 -10.62 16 18 C -0.54 -30.71 9.50 67.96 0.65 -30.06 16 19 H 0.07 3.99 7.80 -2.91 -0.02 3.97 16 20 C 0.02 0.92 5.49 84.86 0.47 1.39 16 21 N -0.91 -53.76 13.22 21.65 0.29 -53.48 16 22 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 26 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.12 0.58 7.44 -2.39 -0.02 0.57 16 33 H 0.04 0.74 7.57 -2.38 -0.02 0.72 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.15 0.92 7.44 -2.39 -0.02 0.91 16 37 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 39 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -74.34 391.44 7.09 -67.25 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.98 Total: 9.87 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 5.00 Total: -27.29 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.31 Total: -63.98 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.61 Total: -20.66 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -9.41 SS G_CDS: -1.21 Total: -10.62 kcal Total: -74.34 7.09 -67.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805488887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.069 kcal (2) G-P(sol) polarization free energy of solvation -74.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds