Wall clock time and date at job start Tue Mar 31 2020 14:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47302 * 2 1 4 4 C 1.52993 * 109.47374 * 240.00093 * 2 1 3 5 5 C 1.50695 * 109.47254 * 60.00142 * 4 2 1 6 6 H 1.08003 * 120.00448 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00442 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00722 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99598 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47298 * 89.99964 * 9 7 5 11 11 H 1.48499 * 109.47064 * 210.00162 * 9 7 5 12 12 H 1.48498 * 109.47044 * 329.99838 * 9 7 5 13 13 C 1.53000 * 109.46962 * 119.99937 * 2 1 3 14 14 N 1.46504 * 109.47199 * 300.00097 * 13 2 1 15 15 C 1.34776 * 120.00059 * 180.02562 * 14 13 2 16 16 O 1.21595 * 119.99795 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00286 * 179.97438 * 15 14 13 18 18 N 1.40098 * 119.99546 * 0.02562 * 17 15 14 19 19 C 1.39114 * 120.00074 * 180.02562 * 18 17 15 20 20 C 1.39492 * 120.14587 * 179.97438 * 19 18 17 21 21 C 1.38525 * 117.91562 * 179.97438 * 20 19 18 22 22 C 1.38955 * 118.02365 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 120.00627 * 179.97438 * 22 21 20 24 24 N 1.31873 * 119.98694 * 0.02562 * 22 21 20 25 25 N 1.28344 * 122.26547 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.47275 * 300.00354 * 1 2 3 27 27 H 1.09006 * 109.46499 * 59.99861 * 1 2 3 28 28 H 1.08997 * 109.46763 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47541 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47249 * 300.00280 * 3 2 1 31 31 H 1.09001 * 109.46525 * 59.99824 * 3 2 1 32 32 H 1.09001 * 109.47269 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47237 * 300.00163 * 4 2 1 34 34 H 0.96996 * 120.00427 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47060 * 180.02562 * 13 2 1 36 36 H 1.08994 * 109.47310 * 60.00144 * 13 2 1 37 37 H 0.97000 * 119.99687 * 359.97438 * 14 13 2 38 38 H 0.96998 * 120.00286 * 179.97438 * 17 15 14 39 39 H 0.97006 * 120.00490 * 359.97438 * 18 17 15 40 40 H 1.08001 * 121.04667 * 359.95308 * 20 19 18 41 41 H 1.08000 * 120.98829 * 179.73068 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4796 6 1 0.9165 0.8671 -2.3806 7 6 1.8705 -0.4821 -3.7319 8 7 1.4318 0.1375 -4.8058 9 14 2.9445 -2.0009 -3.9033 10 1 2.0860 -3.2117 -3.9481 11 1 3.7360 -1.9086 -5.1563 12 1 3.8652 -2.0897 -2.7416 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8776 -0.4908 3.6696 16 8 2.5766 -1.4794 3.7811 17 7 1.4287 0.1448 4.7700 18 7 0.6229 1.2836 4.6414 19 6 0.1600 1.9400 5.7772 20 6 -0.6422 3.0744 5.6527 21 6 -1.0778 3.6914 6.8140 22 6 -0.6896 3.1424 8.0300 23 17 -1.2056 3.8743 9.5172 24 7 0.0716 2.0658 8.0541 25 7 0.4790 1.4905 6.9816 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 -0.7216 -1.2489 33 1 1.6767 -1.7489 -1.2492 34 1 1.6662 -0.1938 -5.6867 35 1 3.1300 -0.7209 1.2495 36 1 1.6767 -1.7488 1.2493 37 1 0.9942 0.7583 2.3564 38 1 1.6630 -0.1866 5.6510 39 1 0.3882 1.6148 3.7604 40 1 -0.9148 3.4599 4.6814 41 1 -1.6973 4.5751 6.7753 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807591876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:39 Heat of formation + Delta-G solvation = 60.078286 kcal Electronic energy + Delta-G solvation = -24807.996848 eV Core-core repulsion = 20979.087214 eV Total energy + Delta-G solvation = -3828.909634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60851 -40.30913 -37.71629 -37.32351 -36.81750 -33.97350 -33.75257 -32.79973 -32.05815 -29.57081 -27.90779 -26.70007 -26.41760 -25.29257 -24.27085 -22.76653 -21.05419 -19.77997 -19.30065 -18.10663 -17.67248 -17.55352 -16.92357 -16.25790 -16.14372 -15.58610 -15.33485 -14.72893 -14.45556 -14.14285 -14.11168 -13.98697 -13.57135 -13.39307 -12.85347 -12.55920 -12.34730 -12.14982 -12.04645 -11.90390 -11.36407 -11.26152 -11.10301 -10.88813 -10.71292 -10.61138 -10.57482 -10.19077 -10.15419 -10.08561 -9.82080 -9.65280 -9.09480 -9.08577 -8.59811 -8.14296 -6.10632 -4.08548 0.17608 0.39063 1.16270 1.46972 2.75266 2.87056 3.05022 3.27325 3.35833 3.39288 3.60850 3.79878 4.03454 4.19071 4.40090 4.49923 4.97240 5.10208 5.17897 5.21299 5.34563 5.40824 5.48133 5.83405 5.94780 5.95582 6.03667 6.17275 6.27653 6.46604 6.50298 6.65078 6.78012 6.87613 6.89981 6.93536 7.10945 7.27302 7.70336 7.79832 8.13385 8.33132 8.45170 8.92404 9.51857 11.01864 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.029146 B = 0.002094 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.434341 B =13367.874736 C =14131.940704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.513 4.513 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.141 3.859 14 N -0.733 5.733 15 C 0.710 3.290 16 O -0.569 6.569 17 N -0.531 5.531 18 N -0.505 5.505 19 C 0.348 3.652 20 C -0.157 4.157 21 C -0.056 4.056 22 C 0.058 3.942 23 Cl -0.012 7.012 24 N -0.180 5.180 25 N -0.287 5.287 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.389 0.611 38 H 0.443 0.557 39 H 0.435 0.565 40 H 0.163 0.837 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 9.740 23.186 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.017 3.983 14 N -0.390 5.390 15 C 0.409 3.591 16 O -0.442 6.442 17 N -0.288 5.288 18 N -0.238 5.238 19 C 0.105 3.895 20 C -0.192 4.192 21 C -0.085 4.085 22 C -0.118 4.118 23 Cl 0.015 6.985 24 N -0.024 5.024 25 N -0.141 5.141 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.224 0.776 38 H 0.289 0.711 39 H 0.280 0.720 40 H 0.180 0.820 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.426 7.739 23.849 25.654 hybrid contribution -0.571 0.766 -1.042 1.413 sum -5.997 8.505 22.807 25.069 Atomic orbital electron populations 1.21785 0.94778 1.01445 1.00578 1.20719 0.95817 0.95946 0.93903 1.21780 1.00683 0.95522 1.00573 1.19588 0.96408 0.95552 0.92417 1.21044 1.32016 1.13416 0.88585 0.90413 1.25001 0.95672 0.96771 0.95991 1.69889 1.45786 1.40549 0.97920 0.86857 0.81322 0.83858 0.77725 1.20347 1.21482 1.18954 1.21638 0.99038 0.95866 0.81713 1.45376 1.55948 1.32963 1.04748 1.15784 0.80583 0.82663 0.80087 1.91045 1.42600 1.26596 1.83996 1.44695 1.51950 1.21987 1.10140 1.43010 1.51751 1.23288 1.05742 1.19898 0.91054 0.89808 0.88764 1.21688 1.00469 0.95830 1.01202 1.21984 0.96980 0.99785 0.89776 1.23164 1.02105 0.97199 0.89381 1.98418 1.88310 1.79712 1.32028 1.72661 1.05279 1.04750 1.19703 1.73070 1.22302 1.25422 0.93295 0.95430 0.90695 0.93186 0.93183 0.90688 0.95438 0.96226 0.96678 0.92731 0.91473 0.91472 0.77566 0.71113 0.71998 0.81950 0.81841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.05 37.16 0.30 -1.69 16 2 C -0.06 -1.05 0.54 -154.51 -0.08 -1.14 16 3 C -0.13 -1.99 8.05 37.16 0.30 -1.69 16 4 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 5 C -0.51 -13.11 8.20 -34.44 -0.28 -13.39 16 6 H 0.08 2.09 5.92 -52.48 -0.31 1.78 16 7 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.90 -26.43 13.96 55.43 0.77 -25.66 16 9 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 13 C 0.14 2.15 4.56 -4.04 -0.02 2.13 16 14 N -0.73 -9.02 4.92 -65.22 -0.32 -9.34 16 15 C 0.71 9.67 8.68 -86.92 -0.75 8.92 16 16 O -0.57 -10.14 17.18 5.28 0.09 -10.05 16 17 N -0.53 -5.68 6.30 27.64 0.17 -5.50 16 18 N -0.51 -3.92 6.43 31.23 0.20 -3.72 16 19 C 0.35 2.80 7.68 -154.73 -1.19 1.62 16 20 C -0.16 -0.79 10.06 -39.01 -0.39 -1.19 16 21 C -0.06 -0.29 9.99 -39.21 -0.39 -0.68 16 22 C 0.06 0.47 7.37 -17.27 -0.13 0.34 16 23 Cl -0.01 -0.09 29.13 -51.86 -1.51 -1.60 16 24 N -0.18 -1.94 11.48 32.90 0.38 -1.56 16 25 N -0.29 -3.06 10.55 31.24 0.33 -2.73 16 26 H 0.03 0.32 6.86 -51.93 -0.36 -0.03 16 27 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 31 H 0.03 0.32 6.86 -51.93 -0.36 -0.03 16 32 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 33 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.39 3.73 4.08 -40.82 -0.17 3.56 16 38 H 0.44 4.88 8.08 -182.60 -1.47 3.40 16 39 H 0.44 2.36 6.71 -182.59 -1.23 1.14 16 40 H 0.16 0.26 8.06 -52.49 -0.42 -0.17 16 41 H 0.16 0.32 8.06 -52.49 -0.42 -0.11 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -32.57 353.44 -9.10 -41.68 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.05 Total: 2.06 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.82 Total: -5.15 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 1.53 Total: -48.51 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.51 Total: -1.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.57 -9.10 -41.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807591876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.754 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds