Wall clock time and date at job start Tue Mar 31 2020 14:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47302 * 2 1 4 4 C 1.52993 * 109.47374 * 240.00093 * 2 1 3 5 5 C 1.50695 * 109.47254 * 60.00142 * 4 2 1 6 6 H 1.08003 * 120.00448 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00442 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00722 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99598 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47298 * 89.99964 * 9 7 5 11 11 H 1.48499 * 109.47064 * 210.00162 * 9 7 5 12 12 H 1.48498 * 109.47044 * 329.99838 * 9 7 5 13 13 C 1.53000 * 109.46962 * 119.99937 * 2 1 3 14 14 N 1.46504 * 109.47199 * 300.00097 * 13 2 1 15 15 C 1.34776 * 120.00059 * 180.02562 * 14 13 2 16 16 O 1.21595 * 119.99795 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00286 * 179.97438 * 15 14 13 18 18 N 1.40098 * 119.99546 * 0.02562 * 17 15 14 19 19 C 1.39114 * 120.00074 * 180.02562 * 18 17 15 20 20 C 1.39492 * 120.14587 * 179.97438 * 19 18 17 21 21 C 1.38525 * 117.91562 * 179.97438 * 20 19 18 22 22 C 1.38955 * 118.02365 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 120.00627 * 179.97438 * 22 21 20 24 24 N 1.31873 * 119.98694 * 0.02562 * 22 21 20 25 25 N 1.28344 * 122.26547 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.47275 * 300.00354 * 1 2 3 27 27 H 1.09006 * 109.46499 * 59.99861 * 1 2 3 28 28 H 1.08997 * 109.46763 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47541 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47249 * 300.00280 * 3 2 1 31 31 H 1.09001 * 109.46525 * 59.99824 * 3 2 1 32 32 H 1.09001 * 109.47269 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47237 * 300.00163 * 4 2 1 34 34 H 0.96996 * 120.00427 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47060 * 180.02562 * 13 2 1 36 36 H 1.08994 * 109.47310 * 60.00144 * 13 2 1 37 37 H 0.97000 * 119.99687 * 359.97438 * 14 13 2 38 38 H 0.96998 * 120.00286 * 179.97438 * 17 15 14 39 39 H 0.97006 * 120.00490 * 359.97438 * 18 17 15 40 40 H 1.08001 * 121.04667 * 359.95308 * 20 19 18 41 41 H 1.08000 * 120.98829 * 179.73068 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4796 6 1 0.9165 0.8671 -2.3806 7 6 1.8705 -0.4821 -3.7319 8 7 1.4318 0.1375 -4.8058 9 14 2.9445 -2.0009 -3.9033 10 1 2.0860 -3.2117 -3.9481 11 1 3.7360 -1.9086 -5.1563 12 1 3.8652 -2.0897 -2.7416 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8776 -0.4908 3.6696 16 8 2.5766 -1.4794 3.7811 17 7 1.4287 0.1448 4.7700 18 7 0.6229 1.2836 4.6414 19 6 0.1600 1.9400 5.7772 20 6 -0.6422 3.0744 5.6527 21 6 -1.0778 3.6914 6.8140 22 6 -0.6896 3.1424 8.0300 23 17 -1.2056 3.8743 9.5172 24 7 0.0716 2.0658 8.0541 25 7 0.4790 1.4905 6.9816 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 -0.7216 -1.2489 33 1 1.6767 -1.7489 -1.2492 34 1 1.6662 -0.1938 -5.6867 35 1 3.1300 -0.7209 1.2495 36 1 1.6767 -1.7488 1.2493 37 1 0.9942 0.7583 2.3564 38 1 1.6630 -0.1866 5.6510 39 1 0.3882 1.6148 3.7604 40 1 -0.9148 3.4599 4.6814 41 1 -1.6973 4.5751 6.7753 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807591876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:38 Heat of formation + Delta-G solvation = 37.161385 kcal Electronic energy + Delta-G solvation = -24808.990600 eV Core-core repulsion = 20979.087214 eV Total energy + Delta-G solvation = -3829.903385 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.20778 -41.33389 -38.91442 -38.10111 -37.55330 -35.24596 -34.48928 -34.00972 -33.32862 -30.29283 -29.66771 -27.96517 -27.61678 -25.87455 -24.85119 -24.46830 -22.15669 -20.77630 -20.02019 -19.30736 -18.87025 -18.26737 -18.16304 -17.15893 -16.97951 -16.49881 -16.43513 -16.10504 -15.49178 -15.39980 -15.15999 -15.02263 -14.49760 -14.25380 -14.19376 -14.14932 -13.82666 -12.95396 -12.84375 -12.75780 -12.75164 -12.58014 -12.45442 -12.28823 -12.15032 -11.81916 -11.69921 -11.50531 -11.37978 -11.18431 -10.89824 -10.88704 -10.73106 -10.68967 -10.19869 -8.85953 -8.21051 -6.20584 -0.28216 -0.14961 0.56247 0.80108 1.36826 1.40580 1.49409 1.82837 1.91102 2.39865 2.40122 2.93343 3.14854 3.31699 3.66529 3.72479 3.89421 3.97138 4.07548 4.16168 4.48325 4.62449 4.71771 4.72242 4.75873 4.89155 4.95887 5.02900 5.12018 5.21141 5.27966 5.32371 5.43453 5.44296 5.57781 5.72650 5.74227 5.82570 6.13616 6.39286 6.86537 6.93432 7.30149 7.42254 7.55952 8.94132 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.029146 B = 0.002094 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.434341 B =13367.874736 C =14131.940704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.057 4.057 3 C -0.125 4.125 4 C -0.005 4.005 5 C -0.498 4.498 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.931 3.069 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.251 1.251 13 C 0.153 3.847 14 N -0.719 5.719 15 C 0.712 3.288 16 O -0.616 6.616 17 N -0.524 5.524 18 N -0.498 5.498 19 C 0.336 3.664 20 C -0.136 4.136 21 C -0.052 4.052 22 C 0.054 3.946 23 Cl -0.010 7.010 24 N -0.224 5.224 25 N -0.323 5.323 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.405 0.595 38 H 0.442 0.558 39 H 0.447 0.553 40 H 0.207 0.793 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 11.004 24.576 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.537 4.537 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.756 3.244 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.175 1.175 13 C 0.029 3.971 14 N -0.377 5.377 15 C 0.411 3.589 16 O -0.492 6.492 17 N -0.278 5.278 18 N -0.234 5.234 19 C 0.093 3.907 20 C -0.170 4.170 21 C -0.080 4.080 22 C -0.124 4.124 23 Cl 0.017 6.983 24 N -0.066 5.066 25 N -0.176 5.176 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.243 0.757 38 H 0.287 0.713 39 H 0.295 0.705 40 H 0.224 0.776 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.360 9.043 25.290 27.601 hybrid contribution -0.392 0.517 -1.363 1.509 sum -6.753 9.560 23.928 26.637 Atomic orbital electron populations 1.21727 0.93668 1.01400 1.01451 1.20560 0.96647 0.96212 0.92341 1.21724 1.00341 0.94712 1.01453 1.19580 0.96044 0.95566 0.93153 1.21364 1.30096 1.12286 0.89915 0.92589 1.25809 0.97477 0.99772 0.96056 1.70025 1.48135 1.42627 0.98399 0.85947 0.79955 0.80599 0.77863 1.19880 1.21750 1.17506 1.21270 0.98424 0.95450 0.81961 1.44990 1.55957 1.33196 1.03546 1.15738 0.80267 0.82262 0.80602 1.91016 1.44654 1.28750 1.84821 1.44403 1.51629 1.22667 1.09131 1.42944 1.51677 1.22355 1.06418 1.20158 0.91680 0.90768 0.88108 1.22170 0.98011 0.93782 1.03045 1.22422 0.96656 1.00514 0.88424 1.23504 1.01491 0.96763 0.90645 1.98419 1.88136 1.79423 1.32287 1.72551 1.07253 1.06477 1.20313 1.72919 1.23684 1.26713 0.94257 0.91015 0.93346 0.93725 0.93758 0.93329 0.91020 0.96681 0.96837 0.92944 0.92407 0.92334 0.75696 0.71268 0.70517 0.77640 0.78151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.05 71.98 0.58 -3.02 16 2 C -0.06 -1.80 0.54 -52.18 -0.03 -1.83 16 3 C -0.13 -3.60 8.05 71.98 0.58 -3.02 16 4 C -0.01 -0.23 3.11 29.84 0.09 -0.14 16 5 C -0.50 -25.71 8.20 25.60 0.21 -25.50 16 6 H 0.06 3.08 5.92 -2.91 -0.02 3.07 16 7 C 0.01 0.29 5.47 84.66 0.46 0.75 16 8 N -0.95 -56.99 13.96 21.45 0.30 -56.69 16 9 Si 0.93 43.27 27.47 68.60 1.88 45.15 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 12 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 13 C 0.15 4.38 4.56 86.38 0.39 4.78 16 14 N -0.72 -15.63 4.92 -478.53 -2.36 -17.98 16 15 C 0.71 18.15 8.68 179.05 1.55 19.71 16 16 O -0.62 -21.55 17.18 -4.01 -0.07 -21.62 16 17 N -0.52 -10.28 6.30 -184.74 -1.16 -11.44 16 18 N -0.50 -6.16 6.43 -55.11 -0.35 -6.51 16 19 C 0.34 4.50 7.68 133.10 1.02 5.53 16 20 C -0.14 -0.78 10.06 22.64 0.23 -0.55 16 21 C -0.05 -0.34 9.99 22.51 0.22 -0.11 16 22 C 0.05 0.77 7.37 84.86 0.62 1.40 16 23 Cl -0.01 -0.13 29.13 -2.72 -0.08 -0.21 16 24 N -0.22 -4.65 11.48 -49.83 -0.57 -5.23 16 25 N -0.32 -6.55 10.55 -55.07 -0.58 -7.14 16 26 H 0.07 1.40 6.86 -2.39 -0.02 1.38 16 27 H 0.05 1.66 6.62 -2.38 -0.02 1.65 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.67 6.62 -2.39 -0.02 1.65 16 31 H 0.07 1.40 6.86 -2.39 -0.02 1.39 16 32 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 33 H 0.01 0.57 7.57 -2.38 -0.02 0.55 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.40 6.02 4.08 -92.71 -0.38 5.64 16 38 H 0.44 9.41 8.08 -213.32 -1.72 7.69 16 39 H 0.45 2.84 6.71 -213.31 -1.43 1.41 16 40 H 0.21 -0.68 8.06 -2.91 -0.02 -0.70 16 41 H 0.20 -0.23 8.06 -2.91 -0.02 -0.26 16 Total: -1.00 -74.68 353.44 0.47 -74.21 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -2.48 Total: 9.48 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.94 Total: -2.02 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -4.73 Total: -104.98 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.07 Total: -21.62 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.15 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.08 Total: -0.21 kcal Total: -74.68 0.47 -74.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807591876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.368 kcal (2) G-P(sol) polarization free energy of solvation -74.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds