Wall clock time and date at job start Tue Mar 31 2020 14:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.53005 * 109.47120 * 240.00548 * 2 1 3 5 5 C 1.50697 * 109.47283 * 59.99949 * 4 2 1 6 6 H 1.08002 * 119.99869 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00197 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00192 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99995 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47420 * 89.99847 * 9 7 5 11 11 H 1.48503 * 109.47256 * 210.00274 * 9 7 5 12 12 H 1.48498 * 109.47124 * 329.99714 * 9 7 5 13 13 C 1.53004 * 109.47448 * 120.00519 * 2 1 3 14 14 N 1.46507 * 109.46773 * 299.99896 * 13 2 1 15 15 C 1.34774 * 119.99765 * 179.97438 * 14 13 2 16 16 O 1.21588 * 119.99889 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.40105 * 119.99775 * 0.27790 * 17 15 14 19 19 C 1.38999 * 119.99712 * 179.72243 * 18 17 15 20 20 C 1.39298 * 120.08484 * 180.02562 * 19 18 17 21 21 N 1.31932 * 119.92476 * 179.97438 * 20 19 18 22 22 C 1.32236 * 120.10630 * 0.02562 * 21 20 19 23 23 C 1.38340 * 120.16656 * 0.02562 * 22 21 20 24 24 Cl 1.73603 * 119.96165 * 179.97438 * 23 22 21 25 25 N 1.32328 * 120.07746 * 359.69658 * 23 22 21 26 26 H 1.08996 * 109.46678 * 299.99615 * 1 2 3 27 27 H 1.08998 * 109.47244 * 59.99463 * 1 2 3 28 28 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47603 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47444 * 300.00414 * 3 2 1 31 31 H 1.09005 * 109.47105 * 60.00317 * 3 2 1 32 32 H 1.09000 * 109.46931 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.46840 * 299.99516 * 4 2 1 34 34 H 0.97005 * 119.99785 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47266 * 180.02562 * 13 2 1 36 36 H 1.08997 * 109.46955 * 59.99513 * 13 2 1 37 37 H 0.97004 * 119.99669 * 0.02562 * 14 13 2 38 38 H 0.97001 * 119.99727 * 179.97438 * 17 15 14 39 39 H 0.97000 * 119.99844 * 359.72383 * 18 17 15 40 40 H 1.08005 * 120.03367 * 359.95122 * 20 19 18 41 41 H 1.08004 * 119.91617 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5377 -0.0107 -2.4798 6 1 0.9164 0.8672 -2.3806 7 6 1.8703 -0.4819 -3.7320 8 7 1.4315 0.1379 -4.8058 9 14 2.9431 -2.0015 -3.9035 10 1 2.0836 -3.2117 -3.9489 11 1 3.7351 -1.9095 -5.1564 12 1 3.8635 -2.0914 -2.7417 13 6 2.0401 -0.7214 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8770 -0.4916 3.6695 16 8 2.5760 -1.4802 3.7809 17 7 1.4282 0.1440 4.7700 18 7 0.6187 1.2803 4.6415 19 6 0.1511 1.9324 5.7765 20 6 -0.6542 3.0620 5.6508 21 7 -1.0967 3.6782 6.7302 22 6 -0.7765 3.2255 7.9307 23 6 0.0239 2.1046 8.0602 24 17 0.4415 1.5151 9.6388 25 7 0.4670 1.4779 6.9823 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.1300 -0.7207 -1.2496 33 1 1.6767 -1.7489 -1.2494 34 1 1.6659 -0.1935 -5.6868 35 1 3.1301 -0.7210 1.2494 36 1 1.6767 -1.7490 1.2491 37 1 0.9937 0.7577 2.3564 38 1 1.6619 -0.1879 5.6509 39 1 0.3847 1.6119 3.7605 40 1 -0.9157 3.4332 4.6708 41 1 -1.1408 3.7320 8.8123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807593321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:45 Heat of formation + Delta-G solvation = 50.605730 kcal Electronic energy + Delta-G solvation = -24908.153456 eV Core-core repulsion = 21078.833061 eV Total energy + Delta-G solvation = -3829.320395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68120 -40.30842 -37.68569 -37.35611 -36.90498 -34.56674 -33.73176 -32.63737 -32.03497 -29.32996 -27.89572 -26.68247 -26.40323 -25.16154 -24.26848 -22.76028 -21.05654 -19.87485 -19.18898 -18.25812 -17.61172 -17.36082 -16.92177 -16.49240 -16.12728 -15.55432 -15.49582 -15.29575 -14.49803 -14.11056 -13.98709 -13.63171 -13.56247 -13.20144 -12.83838 -12.66834 -12.43742 -12.33452 -12.20515 -11.93191 -11.37396 -11.26894 -11.18365 -11.09236 -10.70203 -10.61810 -10.59080 -10.07481 -9.91346 -9.84740 -9.81173 -9.63969 -9.08213 -9.07332 -8.58774 -8.08229 -6.09538 -4.07400 0.17316 0.58543 1.08664 1.40514 2.75978 2.93333 3.11421 3.27944 3.36421 3.39820 3.61758 3.74720 3.84913 4.40951 4.43956 4.64207 4.84935 5.20633 5.22402 5.41875 5.49167 5.50193 5.78544 5.96458 5.96546 6.01715 6.18576 6.28259 6.43399 6.48385 6.53433 6.67885 6.79064 6.91693 6.94470 6.95397 7.11547 7.14493 7.28324 7.71616 7.84727 8.32096 8.46375 8.93697 9.52961 11.02986 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.027977 B = 0.002222 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.569811 B =12598.249413 C =13402.443958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.141 3.859 14 N -0.733 5.733 15 C 0.709 3.291 16 O -0.570 6.570 17 N -0.531 5.531 18 N -0.506 5.506 19 C 0.382 3.618 20 C 0.007 3.993 21 N -0.377 5.377 22 C 0.000 4.000 23 C 0.185 3.815 24 Cl -0.011 7.011 25 N -0.503 5.503 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.389 0.611 38 H 0.441 0.559 39 H 0.437 0.563 40 H 0.180 0.820 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.905 6.952 25.500 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.018 3.982 14 N -0.390 5.390 15 C 0.409 3.591 16 O -0.444 6.444 17 N -0.288 5.288 18 N -0.239 5.239 19 C 0.141 3.859 20 C -0.164 4.164 21 N -0.089 5.089 22 C -0.161 4.161 23 C 0.017 3.983 24 Cl 0.017 6.983 25 N -0.230 5.230 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.225 0.775 38 H 0.287 0.713 39 H 0.283 0.717 40 H 0.197 0.803 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.218 5.980 25.324 26.360 hybrid contribution 0.407 -0.621 -0.146 0.757 sum -3.811 5.359 25.178 26.023 Atomic orbital electron populations 1.21783 0.94747 1.01427 1.00634 1.20721 0.95840 0.95957 0.93864 1.21779 1.00654 0.95499 1.00631 1.19592 0.96394 0.95542 0.92439 1.21045 1.31992 1.13412 0.88575 0.90386 1.24998 0.95675 0.96758 0.95996 1.69898 1.45786 1.40549 0.97915 0.86860 0.81316 0.83886 0.77714 1.20357 1.21486 1.18968 1.21637 0.99010 0.95845 0.81729 1.45379 1.55901 1.32978 1.04729 1.15791 0.80601 0.82641 0.80114 1.91040 1.42680 1.26632 1.84030 1.44680 1.51786 1.22327 1.10041 1.43179 1.51274 1.23455 1.05943 1.19091 0.91220 0.89922 0.85706 1.23116 0.99524 0.93917 0.99853 1.68436 1.16197 1.26489 0.97817 1.23224 1.00158 0.95756 0.96954 1.22535 0.94817 0.92528 0.88440 1.98447 1.92267 1.88520 1.19041 1.67012 1.26273 1.32803 0.96911 0.95381 0.90672 0.93218 0.93215 0.90669 0.95382 0.96242 0.96694 0.92741 0.91502 0.91511 0.77515 0.71284 0.71715 0.80311 0.80475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.05 37.16 0.30 -1.71 16 2 C -0.06 -1.06 0.54 -154.51 -0.08 -1.14 16 3 C -0.13 -2.00 8.05 37.16 0.30 -1.71 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.15 8.20 -34.44 -0.28 -13.43 16 6 H 0.08 2.11 5.92 -52.49 -0.31 1.80 16 7 C 0.07 1.84 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -26.54 13.96 55.43 0.77 -25.76 16 9 Si 0.87 20.98 27.47 -169.99 -4.67 16.31 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 13 C 0.14 2.16 4.56 -4.04 -0.02 2.14 16 14 N -0.73 -9.04 4.92 -65.22 -0.32 -9.36 16 15 C 0.71 9.66 8.68 -86.92 -0.75 8.90 16 16 O -0.57 -10.15 17.18 5.29 0.09 -10.06 16 17 N -0.53 -5.64 6.30 27.63 0.17 -5.47 16 18 N -0.51 -3.93 6.42 31.21 0.20 -3.73 16 19 C 0.38 3.10 7.60 -154.73 -1.18 1.92 16 20 C 0.01 0.05 11.08 -17.11 -0.19 -0.14 16 21 N -0.38 -2.98 10.49 -12.85 -0.13 -3.12 16 22 C 0.00 0.00 10.99 -17.34 -0.19 -0.19 16 23 C 0.18 1.52 7.28 -17.30 -0.13 1.40 16 24 Cl -0.01 -0.08 29.13 -51.86 -1.51 -1.59 16 25 N -0.50 -4.76 9.53 -9.36 -0.09 -4.85 16 26 H 0.03 0.33 6.86 -51.93 -0.36 -0.02 16 27 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 31 H 0.03 0.33 6.86 -51.93 -0.36 -0.02 16 32 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 33 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.39 3.76 4.08 -40.82 -0.17 3.60 16 38 H 0.44 4.82 8.07 -182.59 -1.47 3.35 16 39 H 0.44 2.41 6.71 -182.59 -1.22 1.19 16 40 H 0.18 0.63 8.06 -52.48 -0.42 0.21 16 41 H 0.18 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -32.06 353.26 -9.62 -41.68 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.05 Total: 2.96 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.41 Total: -2.33 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.60 Total: -52.29 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.51 Total: -1.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.06 -9.62 -41.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807593321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.284 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds