Wall clock time and date at job start Tue Mar 31 2020 14:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.53005 * 109.47120 * 240.00548 * 2 1 3 5 5 C 1.50697 * 109.47283 * 59.99949 * 4 2 1 6 6 H 1.08002 * 119.99869 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00197 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00192 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99995 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47420 * 89.99847 * 9 7 5 11 11 H 1.48503 * 109.47256 * 210.00274 * 9 7 5 12 12 H 1.48498 * 109.47124 * 329.99714 * 9 7 5 13 13 C 1.53004 * 109.47448 * 120.00519 * 2 1 3 14 14 N 1.46507 * 109.46773 * 299.99896 * 13 2 1 15 15 C 1.34774 * 119.99765 * 179.97438 * 14 13 2 16 16 O 1.21588 * 119.99889 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.40105 * 119.99775 * 0.27790 * 17 15 14 19 19 C 1.38999 * 119.99712 * 179.72243 * 18 17 15 20 20 C 1.39298 * 120.08484 * 180.02562 * 19 18 17 21 21 N 1.31932 * 119.92476 * 179.97438 * 20 19 18 22 22 C 1.32236 * 120.10630 * 0.02562 * 21 20 19 23 23 C 1.38340 * 120.16656 * 0.02562 * 22 21 20 24 24 Cl 1.73603 * 119.96165 * 179.97438 * 23 22 21 25 25 N 1.32328 * 120.07746 * 359.69658 * 23 22 21 26 26 H 1.08996 * 109.46678 * 299.99615 * 1 2 3 27 27 H 1.08998 * 109.47244 * 59.99463 * 1 2 3 28 28 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47603 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47444 * 300.00414 * 3 2 1 31 31 H 1.09005 * 109.47105 * 60.00317 * 3 2 1 32 32 H 1.09000 * 109.46931 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.46840 * 299.99516 * 4 2 1 34 34 H 0.97005 * 119.99785 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47266 * 180.02562 * 13 2 1 36 36 H 1.08997 * 109.46955 * 59.99513 * 13 2 1 37 37 H 0.97004 * 119.99669 * 0.02562 * 14 13 2 38 38 H 0.97001 * 119.99727 * 179.97438 * 17 15 14 39 39 H 0.97000 * 119.99844 * 359.72383 * 18 17 15 40 40 H 1.08005 * 120.03367 * 359.95122 * 20 19 18 41 41 H 1.08004 * 119.91617 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5377 -0.0107 -2.4798 6 1 0.9164 0.8672 -2.3806 7 6 1.8703 -0.4819 -3.7320 8 7 1.4315 0.1379 -4.8058 9 14 2.9431 -2.0015 -3.9035 10 1 2.0836 -3.2117 -3.9489 11 1 3.7351 -1.9095 -5.1564 12 1 3.8635 -2.0914 -2.7417 13 6 2.0401 -0.7214 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8770 -0.4916 3.6695 16 8 2.5760 -1.4802 3.7809 17 7 1.4282 0.1440 4.7700 18 7 0.6187 1.2803 4.6415 19 6 0.1511 1.9324 5.7765 20 6 -0.6542 3.0620 5.6508 21 7 -1.0967 3.6782 6.7302 22 6 -0.7765 3.2255 7.9307 23 6 0.0239 2.1046 8.0602 24 17 0.4415 1.5151 9.6388 25 7 0.4670 1.4779 6.9823 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.1300 -0.7207 -1.2496 33 1 1.6767 -1.7489 -1.2494 34 1 1.6659 -0.1935 -5.6868 35 1 3.1301 -0.7210 1.2494 36 1 1.6767 -1.7490 1.2491 37 1 0.9937 0.7577 2.3564 38 1 1.6619 -0.1879 5.6509 39 1 0.3847 1.6119 3.7605 40 1 -0.9157 3.4332 4.6708 41 1 -1.1408 3.7320 8.8123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807593321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:45 Heat of formation + Delta-G solvation = 27.919742 kcal Electronic energy + Delta-G solvation = -24909.137194 eV Core-core repulsion = 21078.833061 eV Total energy + Delta-G solvation = -3830.304133 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.28387 -41.33683 -38.90999 -38.06848 -37.67861 -35.36294 -35.03012 -33.98522 -33.20826 -30.03129 -29.64593 -27.96302 -27.61456 -25.78748 -24.87887 -24.46709 -22.15917 -20.84655 -19.92021 -19.42016 -18.87729 -18.43142 -17.86213 -17.34804 -16.97899 -16.49928 -16.38559 -16.15910 -16.03641 -15.45820 -15.38802 -15.12182 -14.21969 -14.15744 -14.12956 -14.09082 -13.70311 -13.20190 -12.93266 -12.83738 -12.79749 -12.59956 -12.49001 -12.28672 -12.14862 -11.92398 -11.83776 -11.71141 -11.50379 -11.18283 -10.89640 -10.68832 -10.64477 -10.43035 -10.16018 -8.76628 -8.20846 -6.20470 -0.37568 -0.00047 0.53593 0.67636 1.36924 1.40506 1.49460 1.82466 1.91368 2.40269 2.52292 2.92837 3.15075 3.21087 3.34212 3.86379 3.91214 4.07439 4.07651 4.16467 4.33339 4.62820 4.72402 4.75560 4.94497 4.96214 5.03339 5.12317 5.19106 5.27816 5.32733 5.43430 5.44427 5.57959 5.67051 5.72694 5.79524 5.88674 6.28999 6.39550 6.54721 6.86796 6.99982 7.30872 7.42392 8.94439 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.027977 B = 0.002222 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.569811 B =12598.249413 C =13402.443958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.057 4.057 3 C -0.125 4.125 4 C -0.005 4.005 5 C -0.498 4.498 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.931 3.069 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.251 1.251 13 C 0.154 3.846 14 N -0.719 5.719 15 C 0.712 3.288 16 O -0.616 6.616 17 N -0.523 5.523 18 N -0.499 5.499 19 C 0.372 3.628 20 C 0.021 3.979 21 N -0.394 5.394 22 C 0.007 3.993 23 C 0.168 3.832 24 Cl -0.010 7.010 25 N -0.526 5.526 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.015 0.985 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.405 0.595 38 H 0.441 0.559 39 H 0.449 0.551 40 H 0.213 0.787 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 7.593 27.484 29.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.537 4.537 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.593 5.593 9 Si 0.757 3.243 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.175 1.175 13 C 0.030 3.970 14 N -0.377 5.377 15 C 0.411 3.589 16 O -0.493 6.493 17 N -0.277 5.277 18 N -0.235 5.235 19 C 0.131 3.869 20 C -0.149 4.149 21 N -0.107 5.107 22 C -0.153 4.153 23 C 0.001 3.999 24 Cl 0.018 6.982 25 N -0.253 5.253 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.243 0.757 38 H 0.287 0.713 39 H 0.296 0.704 40 H 0.230 0.770 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.724 6.672 27.366 28.561 hybrid contribution 0.467 -0.702 -0.656 1.069 sum -4.257 5.970 26.710 27.698 Atomic orbital electron populations 1.21726 0.93697 1.01389 1.01447 1.20560 0.96620 0.96196 0.92376 1.21723 1.00337 0.94733 1.01447 1.19583 0.96048 0.95564 0.93137 1.21365 1.30079 1.12270 0.89941 0.92651 1.25813 0.97485 0.99797 0.96036 1.70036 1.48154 1.42656 0.98407 0.85939 0.79938 0.80566 0.77873 1.19867 1.21749 1.17466 1.21263 0.98408 0.95421 0.81940 1.45004 1.55920 1.33205 1.03585 1.15740 0.80287 0.82241 0.80613 1.91013 1.44691 1.28733 1.84830 1.44372 1.51422 1.22872 1.09061 1.43109 1.51209 1.22576 1.06585 1.19276 0.91805 0.90485 0.85346 1.23650 0.97674 0.92620 1.00981 1.68543 1.16876 1.26961 0.98294 1.23601 0.98966 0.95061 0.97653 1.22675 0.95667 0.93177 0.88340 1.98444 1.92320 1.88572 1.18854 1.66940 1.26928 1.33667 0.97740 0.91034 0.93391 0.93703 0.93737 0.93379 0.91036 0.96656 0.96808 0.92951 0.92393 0.92330 0.75702 0.71337 0.70364 0.77006 0.78284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 8.05 71.98 0.58 -3.08 16 2 C -0.06 -1.81 0.54 -52.18 -0.03 -1.84 16 3 C -0.13 -3.66 8.05 71.98 0.58 -3.08 16 4 C -0.01 -0.23 3.11 29.85 0.09 -0.14 16 5 C -0.50 -25.87 8.20 25.60 0.21 -25.66 16 6 H 0.06 3.08 5.92 -2.91 -0.02 3.06 16 7 C 0.00 0.27 5.47 84.65 0.46 0.74 16 8 N -0.95 -57.34 13.96 21.44 0.30 -57.05 16 9 Si 0.93 43.41 27.47 68.60 1.88 45.29 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 13 C 0.15 4.42 4.56 86.38 0.39 4.81 16 14 N -0.72 -15.69 4.92 -478.52 -2.36 -18.05 16 15 C 0.71 17.97 8.68 179.06 1.55 19.52 16 16 O -0.62 -21.32 17.18 -3.99 -0.07 -21.39 16 17 N -0.52 -9.99 6.30 -184.75 -1.16 -11.15 16 18 N -0.50 -6.22 6.42 -55.18 -0.35 -6.57 16 19 C 0.37 5.03 7.60 133.02 1.01 6.04 16 20 C 0.02 0.22 11.08 84.93 0.94 1.16 16 21 N -0.39 -5.12 10.49 -194.57 -2.04 -7.16 16 22 C 0.01 0.09 10.99 84.66 0.93 1.02 16 23 C 0.17 2.50 7.28 84.64 0.62 3.12 16 24 Cl -0.01 -0.14 29.13 -2.72 -0.08 -0.22 16 25 N -0.53 -9.01 9.53 -183.54 -1.75 -10.76 16 26 H 0.07 1.44 6.86 -2.39 -0.02 1.42 16 27 H 0.05 1.67 6.62 -2.39 -0.02 1.66 16 28 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.68 6.62 -2.39 -0.02 1.66 16 31 H 0.07 1.44 6.86 -2.38 -0.02 1.42 16 32 H 0.02 0.66 7.20 -2.39 -0.02 0.64 16 33 H 0.01 0.59 7.57 -2.38 -0.02 0.57 16 34 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.40 6.16 4.08 -92.71 -0.38 5.78 16 38 H 0.44 9.00 8.07 -213.32 -1.72 7.28 16 39 H 0.45 3.11 6.71 -213.32 -1.43 1.67 16 40 H 0.21 0.53 8.06 -2.91 -0.02 0.51 16 41 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -71.29 353.26 -0.76 -72.05 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -2.48 Total: 12.41 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 7.34 Total: 2.60 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -7.36 Total: -110.74 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.07 Total: -21.39 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -71.29 -0.76 -72.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807593321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.967 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds