Wall clock time and date at job start Tue Mar 31 2020 14:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.53000 * 109.47415 * 240.00182 * 2 1 3 5 5 C 1.50699 * 109.46978 * 59.99616 * 4 2 1 6 6 H 1.07998 * 120.00139 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00095 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99895 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47136 * 90.00173 * 9 7 5 11 11 H 1.48504 * 109.46915 * 210.00252 * 9 7 5 12 12 H 1.48503 * 109.47098 * 330.00107 * 9 7 5 13 13 C 1.53001 * 109.47124 * 119.99716 * 2 1 3 14 14 N 1.46499 * 109.47073 * 300.00146 * 13 2 1 15 15 C 1.34774 * 119.99899 * 179.97438 * 14 13 2 16 16 O 1.21593 * 120.00257 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00548 * 180.02562 * 15 14 13 18 18 N 1.40109 * 119.99481 * 0.02562 * 17 15 14 19 19 C 1.38605 * 119.99605 * 180.27784 * 18 17 15 20 20 N 1.32957 * 120.54012 * 359.72472 * 19 18 17 21 21 C 1.31764 * 120.69972 * 180.02562 * 20 19 18 22 22 N 1.31770 * 121.86064 * 359.97438 * 21 20 19 23 23 C 1.32565 * 121.01517 * 0.02562 * 22 21 20 24 24 C 1.38202 * 119.18403 * 359.72111 * 23 22 21 25 25 Cl 1.73598 * 120.84327 * 180.29881 * 24 23 22 26 26 H 1.08998 * 109.47089 * 299.99981 * 1 2 3 27 27 H 1.09005 * 109.47089 * 60.00233 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47359 * 300.00345 * 3 2 1 31 31 H 1.09007 * 109.47356 * 59.99868 * 3 2 1 32 32 H 1.09000 * 109.46966 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.46807 * 299.99967 * 4 2 1 34 34 H 0.96996 * 120.00083 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46837 * 180.02562 * 13 2 1 36 36 H 1.08994 * 109.47075 * 60.00423 * 13 2 1 37 37 H 0.96996 * 119.99958 * 0.02562 * 14 13 2 38 38 H 0.97000 * 120.00718 * 180.02562 * 17 15 14 39 39 H 0.97001 * 119.99794 * 359.97438 * 18 17 15 40 40 H 1.08003 * 119.07235 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.40315 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8713 -0.4815 -3.7319 8 7 2.6275 -1.5507 -3.8526 9 14 1.2492 0.3994 -5.2572 10 1 2.2274 1.4412 -5.6607 11 1 1.0846 -0.5795 -6.3617 12 1 -0.0591 1.0368 -4.9616 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8768 -0.4913 3.6695 16 8 2.5751 -1.4804 3.7812 17 7 1.4272 0.1437 4.7700 18 7 0.6212 1.2825 4.6414 19 6 0.1635 1.9389 5.7731 20 7 0.4783 1.4941 6.9859 21 6 0.0445 2.1153 8.0639 22 7 -0.7110 3.1924 7.9893 23 6 -1.0674 3.6969 6.8164 24 6 -0.6317 3.0820 5.6579 25 17 -1.0663 3.7105 4.0991 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1301 -0.7208 -1.2494 33 1 1.6767 -1.7489 -1.2492 34 1 2.8624 -1.8817 -4.7335 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7488 1.2493 37 1 0.9937 0.7579 2.3563 38 1 1.6615 -0.1876 5.6510 39 1 0.3872 1.6141 3.7604 40 1 0.3158 1.7309 9.0360 41 1 -1.6866 4.5804 6.7668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808303773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:42 Heat of formation + Delta-G solvation = 45.021199 kcal Electronic energy + Delta-G solvation = -25207.958442 eV Core-core repulsion = 21378.395883 eV Total energy + Delta-G solvation = -3829.562558 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55553 -40.25711 -37.60764 -37.26705 -36.90915 -34.05246 -33.52239 -32.65005 -32.03487 -29.73690 -27.18724 -26.61797 -26.31666 -24.91999 -24.22971 -23.09145 -21.10346 -19.89505 -19.33252 -18.28958 -17.52258 -16.69691 -16.56921 -16.29193 -16.06494 -15.45212 -15.44766 -15.16022 -14.51356 -14.30459 -14.07470 -13.97302 -13.19851 -13.04310 -12.86027 -12.71285 -12.28364 -12.11802 -11.94133 -11.68393 -11.28292 -11.08628 -10.93438 -10.91508 -10.71386 -10.55265 -10.48113 -10.32274 -9.97402 -9.92921 -9.78276 -9.29998 -9.01632 -8.99866 -8.40529 -8.19292 -6.04515 -4.06170 0.29935 0.65977 1.35244 1.49574 2.76198 3.00278 3.25057 3.27603 3.35019 3.36231 3.57008 3.69857 3.85428 4.39259 4.41559 4.75820 5.08223 5.30929 5.34517 5.51076 5.52383 5.62368 5.84848 6.04183 6.05272 6.12245 6.28578 6.33287 6.36451 6.53397 6.60285 6.74201 6.91983 6.95738 6.98362 7.03294 7.56290 7.58176 7.69561 7.88550 7.93549 8.33424 8.37945 8.98361 9.57257 11.06870 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.002714 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.589833 B =10312.851156 C =11559.067232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.143 3.857 14 N -0.734 5.734 15 C 0.709 3.291 16 O -0.567 6.567 17 N -0.530 5.530 18 N -0.499 5.499 19 C 0.455 3.545 20 N -0.566 5.566 21 C 0.351 3.649 22 N -0.550 5.550 23 C 0.203 3.797 24 C -0.212 4.212 25 Cl -0.038 7.038 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.260 0.740 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.388 0.612 38 H 0.443 0.557 39 H 0.436 0.564 40 H 0.206 0.794 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 10.966 21.707 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.020 3.980 14 N -0.390 5.390 15 C 0.408 3.592 16 O -0.440 6.440 17 N -0.288 5.288 18 N -0.230 5.230 19 C 0.208 3.792 20 N -0.292 5.292 21 C 0.062 3.938 22 N -0.269 5.269 23 C 0.040 3.960 24 C -0.251 4.251 25 Cl -0.010 7.010 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.223 0.777 38 H 0.289 0.711 39 H 0.282 0.718 40 H 0.222 0.778 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.790 9.613 22.130 25.065 hybrid contribution -0.820 1.185 -1.935 2.413 sum -7.610 10.798 20.195 24.132 Atomic orbital electron populations 1.21772 0.95239 1.01336 1.00099 1.20943 0.95496 0.95900 0.95010 1.21772 1.00751 0.95826 1.00096 1.19091 0.96460 0.95275 0.89267 1.21155 1.31344 1.12104 0.90471 0.92264 1.25009 0.95292 0.95048 0.99096 1.69957 1.36839 1.22950 1.23518 0.86650 0.79175 0.79428 0.83064 1.20760 1.21309 1.19949 1.21649 0.99073 0.95859 0.81436 1.45472 1.55757 1.32912 1.04894 1.15815 0.80596 0.82680 0.80107 1.91046 1.42573 1.26429 1.83944 1.44717 1.51939 1.21860 1.10242 1.43305 1.50511 1.22770 1.06389 1.18005 0.87597 0.86564 0.87053 1.68004 1.29107 1.35156 0.96943 1.24867 0.86313 0.86102 0.96504 1.68598 1.17117 1.14413 1.26801 1.23019 0.91579 0.96430 0.84992 1.21923 1.11117 1.01171 0.90901 1.98407 1.91929 1.85991 1.24664 0.95699 0.91201 0.93124 0.93124 0.91212 0.95695 0.96196 0.96183 0.92981 0.91397 0.91392 0.77703 0.71118 0.71809 0.77768 0.80446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.40 16 3 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.21 7.65 -34.44 -0.26 -13.47 16 6 H 0.06 1.46 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 C 0.14 2.40 4.56 -4.04 -0.02 2.38 16 14 N -0.73 -10.20 4.92 -65.23 -0.32 -10.52 16 15 C 0.71 10.42 8.68 -86.92 -0.75 9.66 16 16 O -0.57 -10.50 17.18 5.28 0.09 -10.41 16 17 N -0.53 -6.13 6.30 27.63 0.17 -5.95 16 18 N -0.50 -4.86 6.38 31.26 0.20 -4.66 16 19 C 0.45 4.23 7.64 -154.71 -1.18 3.05 16 20 N -0.57 -5.12 9.51 -13.78 -0.13 -5.25 16 21 C 0.35 2.55 12.28 -92.20 -1.13 1.42 16 22 N -0.55 -4.31 10.43 -14.64 -0.15 -4.46 16 23 C 0.20 1.41 11.11 -17.25 -0.19 1.22 16 24 C -0.21 -1.68 6.38 -39.04 -0.25 -1.93 16 25 Cl -0.04 -0.29 27.78 -51.86 -1.44 -1.73 16 26 H 0.02 0.33 6.86 -51.93 -0.36 -0.03 16 27 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 31 H 0.02 0.33 6.86 -51.93 -0.36 -0.03 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.39 4.58 4.08 -40.82 -0.17 4.41 16 38 H 0.44 4.89 8.09 -182.59 -1.48 3.41 16 39 H 0.44 3.92 5.50 -182.59 -1.00 2.92 16 40 H 0.21 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -31.17 354.66 -10.87 -42.04 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.86 Total: 5.47 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -3.49 Total: -0.50 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.50 Total: -56.03 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.44 Total: -1.73 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.17 -10.87 -42.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808303773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.065 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds