Wall clock time and date at job start Tue Mar 31 2020 14:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.53000 * 109.47415 * 240.00182 * 2 1 3 5 5 C 1.50699 * 109.46978 * 59.99616 * 4 2 1 6 6 H 1.07998 * 120.00139 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00095 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99895 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47136 * 90.00173 * 9 7 5 11 11 H 1.48504 * 109.46915 * 210.00252 * 9 7 5 12 12 H 1.48503 * 109.47098 * 330.00107 * 9 7 5 13 13 C 1.53001 * 109.47124 * 119.99716 * 2 1 3 14 14 N 1.46499 * 109.47073 * 300.00146 * 13 2 1 15 15 C 1.34774 * 119.99899 * 179.97438 * 14 13 2 16 16 O 1.21593 * 120.00257 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00548 * 180.02562 * 15 14 13 18 18 N 1.40109 * 119.99481 * 0.02562 * 17 15 14 19 19 C 1.38605 * 119.99605 * 180.27784 * 18 17 15 20 20 N 1.32957 * 120.54012 * 359.72472 * 19 18 17 21 21 C 1.31764 * 120.69972 * 180.02562 * 20 19 18 22 22 N 1.31770 * 121.86064 * 359.97438 * 21 20 19 23 23 C 1.32565 * 121.01517 * 0.02562 * 22 21 20 24 24 C 1.38202 * 119.18403 * 359.72111 * 23 22 21 25 25 Cl 1.73598 * 120.84327 * 180.29881 * 24 23 22 26 26 H 1.08998 * 109.47089 * 299.99981 * 1 2 3 27 27 H 1.09005 * 109.47089 * 60.00233 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47359 * 300.00345 * 3 2 1 31 31 H 1.09007 * 109.47356 * 59.99868 * 3 2 1 32 32 H 1.09000 * 109.46966 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.46807 * 299.99967 * 4 2 1 34 34 H 0.96996 * 120.00083 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46837 * 180.02562 * 13 2 1 36 36 H 1.08994 * 109.47075 * 60.00423 * 13 2 1 37 37 H 0.96996 * 119.99958 * 0.02562 * 14 13 2 38 38 H 0.97000 * 120.00718 * 180.02562 * 17 15 14 39 39 H 0.97001 * 119.99794 * 359.97438 * 18 17 15 40 40 H 1.08003 * 119.07235 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.40315 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8713 -0.4815 -3.7319 8 7 2.6275 -1.5507 -3.8526 9 14 1.2492 0.3994 -5.2572 10 1 2.2274 1.4412 -5.6607 11 1 1.0846 -0.5795 -6.3617 12 1 -0.0591 1.0368 -4.9616 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8768 -0.4913 3.6695 16 8 2.5751 -1.4804 3.7812 17 7 1.4272 0.1437 4.7700 18 7 0.6212 1.2825 4.6414 19 6 0.1635 1.9389 5.7731 20 7 0.4783 1.4941 6.9859 21 6 0.0445 2.1153 8.0639 22 7 -0.7110 3.1924 7.9893 23 6 -1.0674 3.6969 6.8164 24 6 -0.6317 3.0820 5.6579 25 17 -1.0663 3.7105 4.0991 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1301 -0.7208 -1.2494 33 1 1.6767 -1.7489 -1.2492 34 1 2.8624 -1.8817 -4.7335 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7488 1.2493 37 1 0.9937 0.7579 2.3563 38 1 1.6615 -0.1876 5.6510 39 1 0.3872 1.6141 3.7604 40 1 0.3158 1.7309 9.0360 41 1 -1.6866 4.5804 6.7668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808303773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:41 Heat of formation + Delta-G solvation = 25.622647 kcal Electronic energy + Delta-G solvation = -25208.799626 eV Core-core repulsion = 21378.395883 eV Total energy + Delta-G solvation = -3830.403743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.21179 -41.37871 -38.91329 -38.10834 -37.71153 -35.34643 -34.60937 -33.83198 -33.26227 -30.50709 -29.08143 -27.98994 -27.67277 -25.58112 -24.91103 -24.87700 -22.28102 -20.95477 -20.12952 -19.55016 -18.44998 -18.32187 -17.42703 -17.26626 -17.04138 -16.64700 -16.32095 -16.23142 -15.99808 -15.58250 -15.36386 -14.77039 -14.61189 -14.38316 -14.07377 -13.94468 -13.63530 -13.28455 -12.88870 -12.73276 -12.62241 -12.51392 -12.35158 -12.27803 -12.23867 -11.99195 -11.83035 -11.70451 -11.56339 -11.02564 -10.86967 -10.65440 -10.50268 -10.39252 -10.24886 -9.00694 -8.13169 -6.20505 -0.26456 0.03356 0.52589 0.89909 1.43171 1.43595 1.53478 1.72231 1.84415 2.44808 2.65290 2.80990 3.14726 3.21784 3.32833 3.73296 3.90121 4.06460 4.14292 4.18460 4.52038 4.64085 4.69537 4.73499 4.82539 4.92144 5.03690 5.10694 5.25780 5.26423 5.41289 5.50523 5.51677 5.52363 5.57287 5.79499 5.79888 5.90921 6.08725 6.31411 6.80025 6.94691 7.04007 7.24137 7.47204 8.99259 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.002714 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.589833 B =10312.851156 C =11559.067232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.073 0.927 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.259 1.259 13 C 0.156 3.844 14 N -0.721 5.721 15 C 0.711 3.289 16 O -0.609 6.609 17 N -0.517 5.517 18 N -0.500 5.500 19 C 0.441 3.559 20 N -0.581 5.581 21 C 0.348 3.652 22 N -0.558 5.558 23 C 0.206 3.794 24 C -0.212 4.212 25 Cl -0.033 7.033 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.064 0.936 32 H -0.011 1.011 33 H -0.011 1.011 34 H 0.259 0.741 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.401 0.599 38 H 0.446 0.554 39 H 0.439 0.561 40 H 0.235 0.765 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 13.537 23.114 28.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.183 1.183 13 C 0.032 3.968 14 N -0.379 5.379 15 C 0.410 3.590 16 O -0.486 6.486 17 N -0.273 5.273 18 N -0.233 5.233 19 C 0.196 3.804 20 N -0.307 5.307 21 C 0.060 3.940 22 N -0.277 5.277 23 C 0.042 3.958 24 C -0.251 4.251 25 Cl -0.005 7.005 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.239 0.761 38 H 0.293 0.707 39 H 0.286 0.714 40 H 0.251 0.749 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.658 12.250 23.592 27.957 hybrid contribution -0.289 0.438 -2.228 2.289 sum -8.947 12.688 21.364 26.409 Atomic orbital electron populations 1.21712 0.93617 1.01201 1.01498 1.20723 0.96674 0.96308 0.92757 1.21714 1.00193 0.94619 1.01518 1.18968 0.94486 0.94314 0.92021 1.21580 1.30374 1.12032 0.91002 0.90883 1.25917 0.95729 0.95840 1.02638 1.70112 1.38796 1.24939 1.24050 0.85580 0.79190 0.78117 0.78959 1.20256 1.21728 1.18327 1.21245 0.98137 0.95288 0.82140 1.45091 1.55833 1.33075 1.03889 1.15764 0.80299 0.82322 0.80581 1.91021 1.44451 1.28398 1.84723 1.44352 1.51418 1.22175 1.09333 1.43249 1.50879 1.22285 1.06924 1.18200 0.88100 0.87059 0.87048 1.68044 1.29615 1.35753 0.97280 1.25499 0.85593 0.85746 0.97161 1.68683 1.17192 1.14587 1.27199 1.23502 0.91085 0.96802 0.84366 1.21964 1.10883 1.00756 0.91486 1.98410 1.91855 1.85847 1.24399 0.91699 0.92309 0.94106 0.94112 0.92273 0.91699 0.99279 0.99261 0.93216 0.92852 0.92848 0.76132 0.70674 0.71438 0.74935 0.77813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 8.05 71.98 0.58 -3.32 16 2 C -0.06 -2.29 0.54 -52.18 -0.03 -2.32 16 3 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 4 C 0.04 1.95 4.04 29.85 0.12 2.07 16 5 C -0.51 -26.59 7.65 25.60 0.20 -26.40 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.52 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 8 N -0.94 -56.13 13.29 21.45 0.28 -55.85 16 9 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 13 C 0.16 5.29 4.56 86.38 0.39 5.68 16 14 N -0.72 -19.10 4.92 -478.54 -2.36 -21.46 16 15 C 0.71 20.37 8.68 179.06 1.55 21.92 16 16 O -0.61 -22.77 17.18 -4.01 -0.07 -22.84 16 17 N -0.52 -11.27 6.30 -184.75 -1.16 -12.43 16 18 N -0.50 -8.71 6.38 -55.00 -0.35 -9.06 16 19 C 0.44 7.27 7.64 133.18 1.02 8.29 16 20 N -0.58 -9.36 9.51 -197.51 -1.88 -11.24 16 21 C 0.35 4.24 12.28 180.90 2.22 6.46 16 22 N -0.56 -7.27 10.43 -200.24 -2.09 -9.36 16 23 C 0.21 2.28 11.11 84.57 0.94 3.22 16 24 C -0.21 -2.83 6.38 22.62 0.14 -2.69 16 25 Cl -0.03 -0.41 27.78 -2.72 -0.08 -0.48 16 26 H 0.06 1.52 6.86 -2.39 -0.02 1.51 16 27 H 0.06 2.00 6.62 -2.38 -0.02 1.99 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 2.01 6.62 -2.39 -0.02 1.99 16 31 H 0.06 1.52 6.86 -2.38 -0.02 1.50 16 32 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.40 8.37 4.08 -92.71 -0.38 7.99 16 38 H 0.45 9.39 8.09 -213.31 -1.73 7.66 16 39 H 0.44 6.74 5.50 -213.31 -1.17 5.56 16 40 H 0.23 1.16 8.06 -2.91 -0.02 1.13 16 41 H 0.21 1.02 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -69.21 354.66 0.34 -68.88 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -2.17 Total: 19.19 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 8.18 Total: 9.83 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -7.55 Total: -119.39 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.07 Total: -22.84 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.48 kcal Total: -69.21 0.34 -68.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808303773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.498 kcal (2) G-P(sol) polarization free energy of solvation -69.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds