Wall clock time and date at job start Tue Mar 31 2020 14:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33271 * 126.17656 * 2 1 4 4 C 1.31664 * 108.96830 * 180.28647 * 3 2 1 5 5 C 1.47694 * 125.53419 * 179.74772 * 4 3 2 6 6 C 1.39642 * 120.15082 * 359.75557 * 5 4 3 7 7 C 1.37943 * 119.84569 * 179.71842 * 6 5 4 8 8 C 1.38367 * 120.15024 * 0.53093 * 7 6 5 9 9 C 1.38380 * 120.30498 * 359.76737 * 8 7 6 10 10 C 1.37937 * 120.15227 * 359.94909 * 9 8 7 11 11 O 1.34196 * 108.93129 * 359.75308 * 4 3 2 12 12 C 1.35437 * 107.59661 * 359.97438 * 11 4 3 13 13 C 1.46378 * 126.57225 * 179.97438 * 12 11 4 14 14 O 1.21634 * 120.00078 * 180.02562 * 13 12 11 15 15 O 1.34918 * 119.99650 * 0.02587 * 13 12 11 16 16 C 1.42903 * 116.99535 * 177.75609 * 15 13 12 17 17 C 1.50709 * 112.84860 * 65.19652 * 16 15 13 18 18 H 1.07998 * 119.99797 * 242.86396 * 17 16 15 19 19 C 1.37875 * 119.99653 * 62.85815 * 17 16 15 20 20 N 1.31515 * 120.00478 * 353.77610 * 19 17 16 21 21 Si 1.86805 * 119.99636 * 173.77371 * 19 17 16 22 22 H 1.48497 * 109.47086 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47231 * 120.00249 * 21 19 17 24 24 H 1.48505 * 109.46883 * 240.00202 * 21 19 17 25 25 C 1.53781 * 113.61855 * 293.99877 * 16 15 13 26 26 C 1.53963 * 87.01967 * 220.04867 * 25 16 15 27 27 C 1.53786 * 87.11215 * 25.36038 * 26 25 16 28 28 H 1.09004 * 109.46944 * 270.12907 * 1 2 3 29 29 H 1.08999 * 109.47185 * 30.13328 * 1 2 3 30 30 H 1.09005 * 109.47201 * 150.13420 * 1 2 3 31 31 H 1.08000 * 120.07834 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.92581 * 180.25045 * 7 6 5 33 33 H 1.07998 * 119.84802 * 179.73817 * 8 7 6 34 34 H 1.08001 * 119.92127 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.07765 * 180.02562 * 10 9 8 36 36 H 0.97005 * 120.00091 * 185.00986 * 20 19 17 37 37 H 1.08997 * 113.61352 * 334.56693 * 25 16 15 38 38 H 1.08998 * 113.61533 * 105.46999 * 25 16 15 39 39 H 1.08998 * 113.53476 * 270.81180 * 26 25 16 40 40 H 1.08996 * 113.74163 * 139.94454 * 26 25 16 41 41 H 1.08996 * 113.61511 * 220.09216 * 27 26 25 42 42 H 1.09002 * 113.68669 * 89.19205 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2937 1.0758 0.0000 4 6 3.5514 0.6863 -0.0062 5 6 4.7269 1.5804 -0.0136 6 6 4.5541 2.9661 -0.0196 7 6 5.6564 3.7954 -0.0206 8 6 6.9311 3.2570 -0.0268 9 6 7.1095 1.8848 -0.0272 10 6 6.0161 1.0439 -0.0203 11 8 3.5918 -0.6551 -0.0049 12 6 2.3137 -1.1032 0.0030 13 6 1.8796 -2.5011 0.0066 14 8 0.6932 -2.7695 0.0134 15 8 2.7954 -3.4918 0.0025 16 6 2.3017 -4.8318 0.0563 17 6 1.5100 -5.2133 -1.1681 18 1 0.4643 -5.4672 -1.0774 19 6 2.1209 -5.2380 -2.4039 20 7 3.3583 -4.8122 -2.5345 21 14 1.1908 -5.8766 -3.8928 22 1 -0.1740 -6.2936 -3.4824 23 1 1.0948 -4.8030 -4.9142 24 1 1.9126 -7.0413 -4.4652 25 6 1.5955 -5.1756 1.3783 26 6 2.2862 -6.5492 1.2969 27 6 3.3703 -5.8668 0.4460 28 1 -0.3633 0.0023 1.0277 29 1 -0.3633 0.8888 -0.5159 30 1 -0.3634 -0.8912 -0.5118 31 1 3.5597 3.3875 -0.0192 32 1 5.5243 4.8672 -0.0211 33 1 7.7907 3.9108 -0.0319 34 1 8.1072 1.4713 -0.0325 35 1 6.1568 -0.0269 -0.0202 36 1 3.7634 -4.7612 -3.4144 37 1 1.9274 -4.5693 2.2211 38 1 0.5100 -5.2260 1.2933 39 1 1.7084 -7.2953 0.7515 40 1 2.6504 -6.9148 2.2569 41 1 3.7154 -6.4743 -0.3906 42 1 4.1890 -5.4495 1.0323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810854350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:52 Heat of formation + Delta-G solvation = -12.439741 kcal Electronic energy + Delta-G solvation = -27495.448110 eV Core-core repulsion = 23601.241206 eV Total energy + Delta-G solvation = -3894.206904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.12992 -39.47476 -39.13918 -37.16133 -35.24433 -34.27823 -32.71545 -32.34951 -31.18333 -30.18233 -27.79744 -26.20397 -24.68335 -24.58319 -23.21985 -22.87470 -21.50683 -21.16919 -20.08101 -18.65930 -17.79808 -17.35780 -16.70399 -16.44889 -15.91514 -15.33834 -15.12087 -14.86829 -14.54621 -14.26766 -13.94003 -13.83263 -13.63846 -13.34352 -13.12746 -12.98584 -12.85407 -12.35455 -12.02790 -11.66197 -11.63150 -11.32107 -11.19680 -11.07542 -11.02301 -10.94415 -10.70690 -10.56800 -10.30154 -10.02008 -9.89663 -9.67480 -9.61787 -9.18328 -8.87416 -8.63997 -8.59343 -8.15946 -6.16352 -4.29807 0.42608 1.18570 1.49194 2.54858 2.66494 3.21725 3.30853 3.36045 3.60136 3.65758 3.73413 4.02467 4.31110 4.70047 4.73580 4.87074 4.91768 5.10193 5.17926 5.25625 5.30107 5.59980 5.68347 5.72369 5.74974 5.81037 5.87012 5.87652 5.98100 6.04632 6.09044 6.23699 6.25204 6.26695 6.38265 6.46728 6.52689 6.59098 6.67552 6.86230 7.06062 7.22079 7.45986 7.64192 7.72011 7.79229 8.18580 8.73460 8.99352 9.41103 10.87743 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.003496 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.644726 B = 8006.541606 C = 8186.631569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.068 3.932 3 N -0.475 5.475 4 C 0.242 3.758 5 C -0.017 4.017 6 C -0.070 4.070 7 C -0.125 4.125 8 C -0.102 4.102 9 C -0.122 4.122 10 C -0.084 4.084 11 O -0.163 6.163 12 C -0.064 4.064 13 C 0.551 3.449 14 O -0.476 6.476 15 O -0.322 6.322 16 C 0.234 3.766 17 C -0.518 4.518 18 H 0.071 0.929 19 C 0.076 3.924 20 N -0.860 5.860 21 Si 0.893 3.107 22 H -0.269 1.269 23 H -0.283 1.283 24 H -0.280 1.280 25 C -0.161 4.161 26 C -0.130 4.130 27 C -0.106 4.106 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.264 0.736 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.176 13.191 5.854 15.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 N -0.205 5.205 4 C 0.040 3.960 5 C -0.019 4.019 6 C -0.089 4.089 7 C -0.143 4.143 8 C -0.121 4.121 9 C -0.140 4.140 10 C -0.103 4.103 11 O -0.048 6.048 12 C -0.118 4.118 13 C 0.393 3.607 14 O -0.366 6.366 15 O -0.237 6.237 16 C 0.200 3.800 17 C -0.555 4.555 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.496 5.496 21 Si 0.720 3.280 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.206 1.206 25 C -0.199 4.199 26 C -0.167 4.167 27 C -0.144 4.144 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.879 13.571 5.741 15.522 hybrid contribution -0.143 -1.008 -0.996 1.424 sum 4.736 12.563 4.745 14.240 Atomic orbital electron populations 1.20381 0.85053 1.04485 1.03536 1.21981 0.98324 0.86071 0.99370 1.70415 0.99692 1.30880 1.19559 1.23873 0.93209 0.79234 0.99686 1.17333 0.87874 0.90957 1.05701 1.21213 1.00230 0.90977 0.96448 1.21092 0.92093 0.99995 1.01155 1.21377 0.97422 0.95302 0.97993 1.21101 0.98807 0.93395 1.00654 1.21412 0.90991 1.01158 0.96767 1.84654 1.29845 1.22108 1.68224 1.22678 0.80630 0.95109 1.13422 1.18669 0.84836 0.82645 0.74532 1.90821 1.17047 1.82608 1.46141 1.86264 1.39227 1.17635 1.80560 1.20950 0.91958 0.74830 0.92236 1.21033 0.96587 1.47258 0.90668 0.91068 1.25101 0.94616 0.94149 0.99217 1.70046 1.12615 1.43310 1.23615 0.86501 0.80313 0.78787 0.82358 1.19291 1.20848 1.20629 1.23603 1.00624 0.96975 0.98723 1.22556 0.99021 0.96488 0.98680 1.22900 0.95905 0.97072 0.98524 0.90188 0.90679 0.88274 0.84341 0.85155 0.85544 0.85099 0.84582 0.92662 0.92213 0.91538 0.90106 0.92898 0.90587 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 9.86 36.01 0.36 -0.86 16 2 C 0.07 1.28 7.15 -82.53 -0.59 0.69 16 3 N -0.48 -8.48 10.86 -7.68 -0.08 -8.56 16 4 C 0.24 4.24 7.88 -13.76 -0.11 4.13 16 5 C -0.02 -0.24 5.87 -104.99 -0.62 -0.86 16 6 C -0.07 -0.80 9.69 -39.17 -0.38 -1.18 16 7 C -0.13 -1.12 10.03 -39.64 -0.40 -1.52 16 8 C -0.10 -0.86 10.04 -39.48 -0.40 -1.26 16 9 C -0.12 -1.17 10.03 -39.64 -0.40 -1.57 16 10 C -0.08 -1.05 9.71 -39.17 -0.38 -1.43 16 11 O -0.16 -3.33 10.53 2.72 0.03 -3.30 16 12 C -0.06 -1.38 7.24 -36.88 -0.27 -1.65 16 13 C 0.55 13.34 7.44 34.01 0.25 13.59 16 14 O -0.48 -11.72 13.22 -19.37 -0.26 -11.98 16 15 O -0.32 -8.38 9.66 -42.15 -0.41 -8.79 16 16 C 0.23 5.89 0.45 -90.95 -0.04 5.84 16 17 C -0.52 -14.12 7.03 -34.44 -0.24 -14.36 16 18 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 19 C 0.08 2.06 5.28 -17.82 -0.09 1.97 16 20 N -0.86 -24.31 12.74 55.43 0.71 -23.60 16 21 Si 0.89 21.15 29.55 -169.99 -5.02 16.13 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.16 -3.52 6.51 -25.82 -0.17 -3.68 16 26 C -0.13 -2.57 7.81 -25.82 -0.20 -2.77 16 27 C -0.11 -2.42 7.26 -25.91 -0.19 -2.61 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.10 1.71 6.46 -51.93 -0.34 1.37 16 31 H 0.14 1.54 7.82 -52.49 -0.41 1.13 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.14 1.74 7.89 -52.49 -0.41 1.32 16 36 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.85 7.93 -51.93 -0.41 1.43 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -31.28 364.51 -8.74 -40.02 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.34 Total: 2.10 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -3.86 Total: -7.52 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.62 Total: -32.16 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.63 Total: -24.06 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.28 -8.74 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.582 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds