Wall clock time and date at job start Tue Mar 31 2020 14:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33271 * 126.17656 * 2 1 4 4 C 1.31664 * 108.96830 * 180.28647 * 3 2 1 5 5 C 1.47694 * 125.53419 * 179.74772 * 4 3 2 6 6 C 1.39642 * 120.15082 * 359.75557 * 5 4 3 7 7 C 1.37943 * 119.84569 * 179.71842 * 6 5 4 8 8 C 1.38367 * 120.15024 * 0.53093 * 7 6 5 9 9 C 1.38380 * 120.30498 * 359.76737 * 8 7 6 10 10 C 1.37937 * 120.15227 * 359.94909 * 9 8 7 11 11 O 1.34196 * 108.93129 * 359.75308 * 4 3 2 12 12 C 1.35437 * 107.59661 * 359.97438 * 11 4 3 13 13 C 1.46378 * 126.57225 * 179.97438 * 12 11 4 14 14 O 1.21634 * 120.00078 * 180.02562 * 13 12 11 15 15 O 1.34918 * 119.99650 * 0.02587 * 13 12 11 16 16 C 1.42903 * 116.99535 * 177.75609 * 15 13 12 17 17 C 1.50709 * 112.84860 * 65.19652 * 16 15 13 18 18 H 1.07998 * 119.99797 * 242.86396 * 17 16 15 19 19 C 1.37875 * 119.99653 * 62.85815 * 17 16 15 20 20 N 1.31515 * 120.00478 * 353.77610 * 19 17 16 21 21 Si 1.86805 * 119.99636 * 173.77371 * 19 17 16 22 22 H 1.48497 * 109.47086 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47231 * 120.00249 * 21 19 17 24 24 H 1.48505 * 109.46883 * 240.00202 * 21 19 17 25 25 C 1.53781 * 113.61855 * 293.99877 * 16 15 13 26 26 C 1.53963 * 87.01967 * 220.04867 * 25 16 15 27 27 C 1.53786 * 87.11215 * 25.36038 * 26 25 16 28 28 H 1.09004 * 109.46944 * 270.12907 * 1 2 3 29 29 H 1.08999 * 109.47185 * 30.13328 * 1 2 3 30 30 H 1.09005 * 109.47201 * 150.13420 * 1 2 3 31 31 H 1.08000 * 120.07834 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.92581 * 180.25045 * 7 6 5 33 33 H 1.07998 * 119.84802 * 179.73817 * 8 7 6 34 34 H 1.08001 * 119.92127 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.07765 * 180.02562 * 10 9 8 36 36 H 0.97005 * 120.00091 * 185.00986 * 20 19 17 37 37 H 1.08997 * 113.61352 * 334.56693 * 25 16 15 38 38 H 1.08998 * 113.61533 * 105.46999 * 25 16 15 39 39 H 1.08998 * 113.53476 * 270.81180 * 26 25 16 40 40 H 1.08996 * 113.74163 * 139.94454 * 26 25 16 41 41 H 1.08996 * 113.61511 * 220.09216 * 27 26 25 42 42 H 1.09002 * 113.68669 * 89.19205 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2937 1.0758 0.0000 4 6 3.5514 0.6863 -0.0062 5 6 4.7269 1.5804 -0.0136 6 6 4.5541 2.9661 -0.0196 7 6 5.6564 3.7954 -0.0206 8 6 6.9311 3.2570 -0.0268 9 6 7.1095 1.8848 -0.0272 10 6 6.0161 1.0439 -0.0203 11 8 3.5918 -0.6551 -0.0049 12 6 2.3137 -1.1032 0.0030 13 6 1.8796 -2.5011 0.0066 14 8 0.6932 -2.7695 0.0134 15 8 2.7954 -3.4918 0.0025 16 6 2.3017 -4.8318 0.0563 17 6 1.5100 -5.2133 -1.1681 18 1 0.4643 -5.4672 -1.0774 19 6 2.1209 -5.2380 -2.4039 20 7 3.3583 -4.8122 -2.5345 21 14 1.1908 -5.8766 -3.8928 22 1 -0.1740 -6.2936 -3.4824 23 1 1.0948 -4.8030 -4.9142 24 1 1.9126 -7.0413 -4.4652 25 6 1.5955 -5.1756 1.3783 26 6 2.2862 -6.5492 1.2969 27 6 3.3703 -5.8668 0.4460 28 1 -0.3633 0.0023 1.0277 29 1 -0.3633 0.8888 -0.5159 30 1 -0.3634 -0.8912 -0.5118 31 1 3.5597 3.3875 -0.0192 32 1 5.5243 4.8672 -0.0211 33 1 7.7907 3.9108 -0.0319 34 1 8.1072 1.4713 -0.0325 35 1 6.1568 -0.0269 -0.0202 36 1 3.7634 -4.7612 -3.4144 37 1 1.9274 -4.5693 2.2211 38 1 0.5100 -5.2260 1.2933 39 1 1.7084 -7.2953 0.7515 40 1 2.6504 -6.9148 2.2569 41 1 3.7154 -6.4743 -0.3906 42 1 4.1890 -5.4495 1.0323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810854350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:51 Heat of formation + Delta-G solvation = -30.521168 kcal Electronic energy + Delta-G solvation = -27496.232180 eV Core-core repulsion = 23601.241206 eV Total energy + Delta-G solvation = -3894.990974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.59359 -41.30356 -40.02028 -38.95723 -36.79246 -36.06288 -34.42536 -33.86844 -32.01450 -31.33915 -29.29555 -28.15963 -26.43886 -25.97988 -24.84931 -23.85044 -22.94349 -22.35640 -21.59622 -20.54518 -19.42891 -18.68803 -18.22383 -18.09772 -17.16766 -16.87684 -16.86630 -16.29406 -16.13257 -15.64658 -15.60653 -15.13783 -14.87293 -14.45321 -14.40716 -14.29621 -14.14794 -13.93924 -13.56597 -13.33298 -13.04143 -12.96663 -12.89456 -12.45791 -12.42116 -12.31941 -12.28383 -12.13439 -11.98570 -11.85857 -11.72590 -11.44296 -10.84952 -10.77033 -10.61655 -10.47656 -10.00095 -9.42735 -8.23658 -6.43217 -0.82020 0.22421 0.37730 1.10062 1.32752 1.35150 1.36227 1.47327 1.87704 2.15218 2.33310 2.59431 2.78355 3.06163 3.45443 3.73858 3.91197 3.95971 3.96937 3.98721 4.14182 4.23998 4.25943 4.33032 4.42550 4.51113 4.58875 4.63524 4.66585 4.75215 4.81348 4.86834 4.89648 5.05290 5.13453 5.15761 5.33097 5.36232 5.37584 5.43439 5.48075 5.57586 5.70047 5.82306 5.90465 6.22314 6.27005 6.63334 7.09032 7.32108 8.80196 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.003496 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.644726 B = 8006.541606 C = 8186.631569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.089 3.911 3 N -0.485 5.485 4 C 0.262 3.738 5 C -0.058 4.058 6 C -0.071 4.071 7 C -0.119 4.119 8 C -0.083 4.083 9 C -0.121 4.121 10 C -0.098 4.098 11 O -0.185 6.185 12 C -0.120 4.120 13 C 0.547 3.453 14 O -0.494 6.494 15 O -0.343 6.343 16 C 0.207 3.793 17 C -0.530 4.530 18 H 0.057 0.943 19 C 0.031 3.969 20 N -0.890 5.890 21 Si 0.951 3.049 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.154 4.154 26 C -0.108 4.108 27 C -0.107 4.107 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.120 0.880 36 H 0.264 0.736 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.299 15.550 6.341 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.036 4.036 3 N -0.215 5.215 4 C 0.061 3.939 5 C -0.060 4.060 6 C -0.090 4.090 7 C -0.136 4.136 8 C -0.101 4.101 9 C -0.139 4.139 10 C -0.118 4.118 11 O -0.072 6.072 12 C -0.172 4.172 13 C 0.391 3.609 14 O -0.386 6.386 15 O -0.258 6.258 16 C 0.173 3.827 17 C -0.567 4.567 18 H 0.075 0.925 19 C -0.172 4.172 20 N -0.527 5.527 21 Si 0.776 3.224 22 H -0.189 1.189 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.192 4.192 26 C -0.145 4.145 27 C -0.145 4.145 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.184 0.816 33 H 0.185 0.815 34 H 0.174 0.826 35 H 0.138 0.862 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.988 15.925 6.237 18.121 hybrid contribution -0.323 -1.473 -1.116 1.876 sum 5.665 14.451 5.121 16.345 Atomic orbital electron populations 1.20490 0.82968 1.04832 1.04935 1.22507 0.99577 0.85470 0.96029 1.70510 0.99693 1.30013 1.21267 1.24881 0.94480 0.78586 0.95975 1.17596 0.87111 0.91608 1.09639 1.21383 1.01529 0.89944 0.96145 1.21529 0.91332 1.01445 0.99311 1.21899 0.98604 0.95048 0.94575 1.21442 0.98890 0.93986 0.99601 1.21463 0.91566 1.01031 0.97722 1.84616 1.29685 1.23579 1.69297 1.22304 0.81667 0.94434 1.18845 1.18965 0.84624 0.83437 0.73914 1.90774 1.17294 1.83273 1.47214 1.86232 1.40099 1.18351 1.81128 1.21253 0.93434 0.74911 0.93065 1.21177 0.96119 1.47326 0.92076 0.92459 1.25790 0.95398 0.94276 1.01717 1.70152 1.13903 1.44595 1.24056 0.85613 0.79333 0.78370 0.79098 1.18924 1.21042 1.19403 1.23523 0.99946 0.98347 0.97361 1.22480 0.96952 0.95254 0.99820 1.22891 0.96536 0.96595 0.98457 0.88103 0.87955 0.90079 0.84255 0.81598 0.81509 0.82603 0.86238 0.92732 0.91170 0.92402 0.90129 0.88981 0.92843 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.36 9.86 71.24 0.70 -1.66 16 2 C 0.09 3.46 7.15 41.97 0.30 3.76 16 3 N -0.49 -17.49 10.86 -292.18 -3.17 -20.66 16 4 C 0.26 9.49 7.88 87.22 0.69 10.18 16 5 C -0.06 -1.63 5.87 -20.10 -0.12 -1.75 16 6 C -0.07 -1.51 9.69 22.54 0.22 -1.29 16 7 C -0.12 -1.64 10.03 22.23 0.22 -1.42 16 8 C -0.08 -1.02 10.04 22.33 0.22 -0.79 16 9 C -0.12 -2.02 10.03 22.23 0.22 -1.79 16 10 C -0.10 -2.44 9.71 22.54 0.22 -2.22 16 11 O -0.18 -8.01 10.53 -13.02 -0.14 -8.14 16 12 C -0.12 -5.42 7.24 24.02 0.17 -5.24 16 13 C 0.55 27.95 7.44 69.94 0.52 28.47 16 14 O -0.49 -25.57 13.22 19.40 0.26 -25.32 16 15 O -0.34 -18.77 9.66 -57.31 -0.55 -19.33 16 16 C 0.21 10.78 0.45 -11.01 0.00 10.78 16 17 C -0.53 -29.88 7.03 25.60 0.18 -29.70 16 18 H 0.06 3.30 7.81 -2.91 -0.02 3.27 16 19 C 0.03 1.76 5.28 84.65 0.45 2.21 16 20 N -0.89 -52.20 12.74 21.45 0.27 -51.93 16 21 Si 0.95 44.45 29.55 68.60 2.03 46.48 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 25 C -0.15 -6.78 6.51 31.18 0.20 -6.58 16 26 C -0.11 -4.17 7.81 31.18 0.24 -3.93 16 27 C -0.11 -4.96 7.26 31.12 0.23 -4.74 16 28 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 29 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.08 2.88 6.46 -2.38 -0.02 2.86 16 31 H 0.14 2.88 7.82 -2.91 -0.02 2.85 16 32 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 34 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.12 3.26 7.89 -2.91 -0.02 3.24 16 36 H 0.26 14.69 8.32 -92.70 -0.77 13.92 16 37 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.06 2.60 8.09 -2.39 -0.02 2.58 16 39 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.05 2.68 7.93 -2.39 -0.02 2.66 16 42 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -72.14 364.51 4.40 -67.74 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.04 Total: 16.88 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 4.67 Total: -5.72 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -2.90 Total: -72.59 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.43 Total: -52.79 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -72.14 4.40 -67.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.215 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds