Wall clock time and date at job start Tue Mar 31 2020 14:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.47429 * 2 1 4 4 C 1.37717 * 119.95668 * 100.27255 * 3 2 1 5 5 C 1.39728 * 119.90884 * 180.27494 * 4 3 2 6 6 C 1.47569 * 120.09150 * 179.70113 * 5 4 3 7 7 O 1.21600 * 119.99995 * 0.02649 * 6 5 4 8 8 N 1.34776 * 120.00232 * 180.02562 * 6 5 4 9 9 C 1.39851 * 120.00126 * 175.48148 * 8 6 5 10 10 C 1.38976 * 120.03939 * 214.86629 * 9 8 6 11 11 C 1.38155 * 120.06638 * 179.72259 * 10 9 8 12 12 C 1.38172 * 120.13973 * 0.54841 * 11 10 9 13 13 C 1.38913 * 120.07144 * 359.72898 * 12 11 10 14 14 O 1.35749 * 120.03181 * 179.97438 * 13 12 11 15 15 C 1.34833 * 117.00197 * 5.37385 * 14 13 12 16 16 H 1.08005 * 119.99574 * 354.96201 * 15 14 13 17 17 C 1.38648 * 120.00644 * 174.96124 * 15 14 13 18 18 N 1.31565 * 119.99493 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00356 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47340 * 90.00502 * 19 17 15 21 21 H 1.48505 * 109.47328 * 209.99838 * 19 17 15 22 22 H 1.48498 * 109.47412 * 329.99851 * 19 17 15 23 23 C 1.38730 * 120.03555 * 35.13711 * 9 8 6 24 24 C 1.39767 * 119.82382 * 359.72814 * 5 4 3 25 25 C 1.37685 * 119.90928 * 359.97438 * 24 5 4 26 26 C 1.38976 * 119.95344 * 280.00044 * 3 2 1 27 27 O 1.35719 * 119.91263 * 359.97438 * 26 3 2 28 28 H 1.09005 * 109.46918 * 60.00128 * 1 2 3 29 29 H 1.09003 * 109.46988 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47098 * 300.00243 * 1 2 3 31 31 H 1.09005 * 109.47504 * 239.99649 * 2 1 3 32 32 H 1.08998 * 109.47166 * 119.99606 * 2 1 3 33 33 H 1.07999 * 120.04886 * 0.02562 * 4 3 2 34 34 H 0.96995 * 120.00024 * 355.49097 * 8 6 5 35 35 H 1.08002 * 119.96751 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.93041 * 180.25895 * 11 10 9 37 37 H 1.07994 * 119.96435 * 179.74582 * 12 11 10 38 38 H 0.97001 * 120.00008 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.07369 * 359.97438 * 23 9 8 40 40 H 1.07996 * 120.05187 * 179.97438 * 24 5 4 41 41 H 1.07997 * 119.95976 * 179.97438 * 25 24 5 42 42 H 0.96694 * 113.99966 * 269.72658 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4622 1.9982 1.1741 5 6 2.9225 3.3175 1.1740 6 6 3.3778 3.9424 2.4309 7 8 3.3533 3.3089 3.4685 8 7 3.8209 5.2152 2.4288 9 6 4.1632 5.8385 3.6331 10 6 3.9223 7.1961 3.8068 11 6 4.2549 7.8112 4.9983 12 6 4.8381 7.0817 6.0165 13 6 5.0868 5.7255 5.8470 14 8 5.6603 5.0097 6.8477 15 6 5.8619 5.6471 8.0186 16 1 5.6461 6.7020 8.1032 17 6 6.3461 4.9485 9.1140 18 7 6.6093 3.6636 9.0107 19 14 6.6260 5.8319 10.7359 20 1 5.3890 5.7670 11.5548 21 1 7.7399 5.1788 11.4695 22 1 6.9718 7.2519 10.4730 23 6 4.7486 5.1034 4.6536 24 6 2.9499 4.0441 -0.0197 25 6 2.5241 3.4575 -1.1904 26 6 2.0665 2.1447 -1.1858 27 8 1.6477 1.5701 -2.3419 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4399 1.4334 2.0943 34 1 3.9023 5.6990 1.5921 35 1 3.4709 7.7701 3.0110 36 1 4.0629 8.8655 5.1325 37 1 5.1007 7.5662 6.9452 38 1 6.9478 3.1747 9.7771 39 1 4.9405 4.0490 4.5197 40 1 3.3045 5.0641 -0.0240 41 1 2.5446 4.0183 -2.1131 42 1 2.3475 1.1175 -2.8321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813413066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:16 Heat of formation + Delta-G solvation = -79.242750 kcal Electronic energy + Delta-G solvation = -26105.569563 eV Core-core repulsion = 22208.465863 eV Total energy + Delta-G solvation = -3897.103700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90082 -40.88998 -40.17214 -38.29472 -37.44597 -35.78710 -35.00379 -34.26550 -31.72950 -31.11870 -30.62945 -29.49722 -27.35067 -25.27979 -24.94243 -23.60512 -22.97607 -22.68952 -21.20990 -20.06949 -19.32883 -19.25847 -18.47016 -17.53744 -16.78246 -16.66950 -16.56452 -16.40278 -16.27908 -15.92984 -15.62359 -15.49747 -15.00140 -14.77309 -14.63848 -14.50068 -14.25984 -14.08944 -13.61488 -13.41984 -13.28205 -13.11864 -12.96998 -12.75843 -12.67518 -12.49761 -12.38270 -12.11798 -11.91940 -11.48864 -11.34132 -11.33252 -10.86589 -10.77753 -9.98589 -9.70755 -9.35634 -8.89685 -8.47160 -6.17032 -0.40112 0.24840 0.46891 0.69114 1.33946 1.44525 1.52999 1.66736 1.90522 2.18879 2.63296 2.82892 3.15869 3.17114 3.39514 3.63093 3.69953 3.80974 4.08571 4.12897 4.20581 4.34853 4.40190 4.41719 4.45343 4.51678 4.66161 4.72964 4.75508 4.95400 4.98680 5.02827 5.04663 5.10411 5.13920 5.24166 5.33502 5.38443 5.42208 5.44319 5.62213 5.69236 5.72689 6.02346 6.17924 6.38945 6.81043 6.96295 7.06882 7.79025 8.76837 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019624 B = 0.002423 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.491659 B =11551.049575 C =12674.825262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.124 4.124 4 C -0.059 4.059 5 C -0.157 4.157 6 C 0.547 3.453 7 O -0.564 6.564 8 N -0.647 5.647 9 C 0.180 3.820 10 C -0.201 4.201 11 C -0.048 4.048 12 C -0.253 4.253 13 C 0.125 3.875 14 O -0.236 6.236 15 C -0.414 4.414 16 H 0.108 0.892 17 C -0.028 4.028 18 N -0.925 5.925 19 Si 1.025 2.975 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.247 1.247 23 C -0.214 4.214 24 C -0.062 4.062 25 C -0.145 4.145 26 C 0.145 3.855 27 O -0.496 6.496 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.430 0.570 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.125 0.875 38 H 0.272 0.728 39 H 0.099 0.901 40 H 0.163 0.837 41 H 0.169 0.831 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 2.086 -25.858 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.124 4.124 4 C -0.079 4.079 5 C -0.160 4.160 6 C 0.338 3.662 7 O -0.443 6.443 8 N -0.294 5.294 9 C 0.086 3.914 10 C -0.222 4.222 11 C -0.066 4.066 12 C -0.273 4.273 13 C 0.074 3.926 14 O -0.142 6.142 15 C -0.490 4.490 16 H 0.125 0.875 17 C -0.225 4.225 18 N -0.564 5.564 19 Si 0.843 3.157 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.170 1.170 23 C -0.235 4.235 24 C -0.080 4.080 25 C -0.163 4.163 26 C 0.099 3.901 27 O -0.310 6.310 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.271 0.729 35 H 0.184 0.816 36 H 0.180 0.820 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.180 0.820 41 H 0.186 0.814 42 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -10.047 1.432 -24.918 26.905 hybrid contribution 0.861 -0.360 0.870 1.276 sum -9.186 1.071 -24.048 25.765 Atomic orbital electron populations 1.21702 0.94257 1.02444 1.01606 1.20472 0.96622 0.90891 1.03630 1.20333 1.01277 0.98301 0.92509 1.21073 0.94996 0.93564 0.98227 1.19716 1.07521 0.96139 0.92623 1.18963 0.76481 0.81453 0.89302 1.90873 1.55127 1.63083 1.35255 1.43112 1.64171 1.13525 1.08623 1.17330 0.95683 0.92444 0.85941 1.20916 1.08766 0.92144 1.00345 1.21060 0.94031 1.00422 0.91115 1.21352 1.10091 0.93210 1.02665 1.19676 0.91827 0.91891 0.89167 1.83960 1.69753 1.40054 1.20467 1.21932 1.45548 0.95533 0.85983 0.87514 1.26740 0.95966 0.96592 1.03217 1.70234 1.43732 1.09612 1.32788 0.84514 0.78555 0.78333 0.74296 1.18895 1.19629 1.17033 1.20195 1.08831 1.00156 0.94364 1.21448 0.96095 1.00431 0.90043 1.21655 0.99777 0.95042 0.99830 1.18599 0.93922 0.91702 0.85850 1.84708 1.39688 1.73657 1.32938 0.92176 0.91022 0.94075 0.88836 0.91393 0.86516 0.72920 0.81564 0.81999 0.85752 0.91891 0.88289 0.81980 0.81387 0.72445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 71.98 0.71 -1.50 16 2 C -0.08 -1.24 5.72 29.85 0.17 -1.07 16 3 C -0.12 -2.34 5.14 -19.81 -0.10 -2.44 16 4 C -0.06 -1.50 9.20 22.51 0.21 -1.29 16 5 C -0.16 -3.87 5.87 -20.09 -0.12 -3.98 16 6 C 0.55 18.33 7.61 86.71 0.66 18.99 16 7 O -0.56 -25.86 13.77 -4.03 -0.06 -25.91 16 8 N -0.65 -18.33 5.28 -306.37 -1.62 -19.95 16 9 C 0.18 6.66 6.29 38.16 0.24 6.90 16 10 C -0.20 -6.01 9.96 22.43 0.22 -5.78 16 11 C -0.05 -1.57 10.03 22.23 0.22 -1.35 16 12 C -0.25 -11.27 9.17 22.42 0.21 -11.07 16 13 C 0.13 6.79 6.64 22.56 0.15 6.94 16 14 O -0.24 -15.34 9.76 -22.76 -0.22 -15.56 16 15 C -0.41 -25.28 9.49 67.92 0.64 -24.63 16 16 H 0.11 5.86 5.20 -2.91 -0.02 5.84 16 17 C -0.03 -1.69 5.49 84.83 0.47 -1.22 16 18 N -0.93 -60.02 13.67 21.61 0.30 -59.72 16 19 Si 1.02 44.40 29.55 68.60 2.03 46.43 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 23 C -0.21 -10.63 8.64 22.52 0.19 -10.44 16 24 C -0.06 -0.94 9.53 22.51 0.21 -0.72 16 25 C -0.14 -1.78 9.97 22.33 0.22 -1.56 16 26 C 0.14 2.11 6.68 22.64 0.15 2.26 16 27 O -0.50 -5.06 12.61 -90.41 -1.14 -6.20 16 28 H 0.06 0.94 8.04 -2.38 -0.02 0.92 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.05 7.85 -2.38 -0.02 1.03 16 32 H 0.07 1.14 7.99 -2.39 -0.02 1.12 16 33 H 0.12 3.44 7.61 -2.91 -0.02 3.42 16 34 H 0.43 7.37 6.85 -92.71 -0.64 6.73 16 35 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 37 H 0.12 5.51 5.63 -2.91 -0.02 5.50 16 38 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 39 H 0.10 5.55 6.22 -2.91 -0.02 5.53 16 40 H 0.16 1.32 6.40 -2.91 -0.02 1.30 16 41 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.41 0.32 9.06 -74.06 -0.67 -0.35 16 Total: -1.00 -90.31 360.93 3.54 -86.77 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -0.21 Total: 26.11 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 4.46 Total: -31.97 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -1.32 Total: -79.67 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -1.42 Total: -47.67 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -90.31 3.54 -86.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813413066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.526 kcal (2) G-P(sol) polarization free energy of solvation -90.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds