Wall clock time and date at job start Tue Mar 31 2020 14:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.29028 * 124.91991 * 60.00024 * 5 2 1 7 7 C 1.31778 * 117.12837 * 179.97438 * 6 5 2 8 8 C 1.50702 * 122.74764 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46945 * 264.99918 * 8 7 6 10 10 O 1.20820 * 119.99907 * 0.02562 * 9 8 7 11 11 O 1.34229 * 120.00114 * 180.02562 * 9 8 7 12 12 C 1.45199 * 117.00223 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47026 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.47293 * 65.00376 * 13 12 11 15 15 C 1.42898 * 114.00119 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47431 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99497 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00286 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99994 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99921 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47395 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47440 * 119.99891 * 20 18 16 23 23 H 1.48503 * 109.47320 * 240.00305 * 20 18 16 24 24 C 1.33636 * 114.50124 * 359.97438 * 7 6 5 25 25 S 1.70982 * 124.91863 * 239.69654 * 5 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.09000 * 109.47322 * 24.99797 * 8 7 6 36 36 H 1.09002 * 109.46976 * 144.99955 * 8 7 6 37 37 H 1.08998 * 109.46794 * 300.00201 * 12 11 9 38 38 H 1.08995 * 109.47007 * 59.99796 * 12 11 9 39 39 H 1.09008 * 109.47319 * 184.99836 * 13 12 11 40 40 H 1.09002 * 109.47692 * 304.99923 * 13 12 11 41 41 H 1.09007 * 109.46769 * 299.99360 * 15 14 13 42 42 H 1.08998 * 109.47447 * 59.99333 * 15 14 13 43 43 H 0.97001 * 119.99561 * 179.97438 * 19 18 16 44 44 H 1.08000 * 126.03728 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 1.7798 -0.3533 -2.4443 7 6 2.2996 -1.0875 -3.4072 8 6 2.0867 -0.7854 -4.8682 9 6 0.9295 -1.6000 -5.3862 10 8 0.3381 -2.3487 -4.6449 11 8 0.5559 -1.4939 -6.6710 12 6 -0.5665 -2.3087 -7.1007 13 6 -0.8436 -2.0539 -8.5836 14 8 0.2688 -2.5031 -9.3601 15 6 0.1114 -2.3096 -10.7671 16 6 1.3366 -2.8155 -11.4840 17 1 2.1536 -3.2426 -10.9213 18 6 1.4142 -2.7342 -12.8582 19 7 0.4191 -2.2146 -13.5434 20 14 2.9326 -3.3620 -13.7467 21 1 3.9014 -3.8948 -12.7554 22 1 2.5438 -4.4417 -14.6892 23 1 3.5603 -2.2480 -14.5020 24 6 3.0319 -2.1214 -2.9820 25 16 3.0255 -2.1021 -1.2202 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 1.8685 0.2754 -4.9919 36 1 2.9880 -1.0384 -5.4266 37 1 -0.3292 -3.3619 -6.9507 38 1 -1.4491 -2.0484 -6.5165 39 1 -1.7396 -2.5970 -8.8844 40 1 -0.9936 -0.9867 -8.7471 41 1 -0.7649 -2.8577 -11.1135 42 1 -0.0186 -1.2476 -10.9756 43 1 0.4739 -2.1571 -14.5101 44 1 3.5408 -2.8395 -3.6077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815204895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:47 Heat of formation + Delta-G solvation = -107.918472 kcal Electronic energy + Delta-G solvation = -24611.608519 eV Core-core repulsion = 20848.705298 eV Total energy + Delta-G solvation = -3762.903221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74217 -39.84199 -37.34523 -36.90359 -35.94998 -32.78926 -32.14485 -30.13771 -28.43314 -27.84871 -27.62601 -26.90416 -25.32814 -22.79603 -22.29899 -21.35033 -20.07634 -19.56361 -17.82083 -17.67065 -16.62442 -16.54067 -16.15994 -15.89428 -15.35186 -15.08057 -14.71748 -14.51156 -14.38748 -14.18570 -13.92107 -13.45831 -13.40645 -13.32158 -12.70496 -12.62507 -12.47147 -12.25645 -12.07502 -11.95778 -11.83452 -11.54809 -11.43917 -11.41463 -11.32476 -10.92007 -10.88334 -10.74596 -10.41163 -10.35601 -10.05356 -9.81925 -9.56791 -9.12249 -8.98804 -8.88456 -8.22121 -6.12869 -4.14429 0.49597 1.13241 1.50818 2.29927 2.33095 3.04730 3.28241 3.34679 3.41149 3.63448 4.28483 4.31818 4.47939 4.48761 4.69704 4.73605 4.89170 4.95243 5.05289 5.12709 5.21619 5.23790 5.24371 5.25860 5.35539 5.43693 5.46206 5.49053 5.51062 5.54373 5.65966 5.81674 5.87214 5.91545 5.93614 5.99738 6.10596 6.61617 7.05092 7.39275 7.52721 7.77369 7.86910 8.11787 8.51689 8.98422 9.50344 10.98728 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.001977 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.479988 B =14162.280766 C =14698.357921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.011 3.989 3 C -0.134 4.134 4 C -0.154 4.154 5 C 0.061 3.939 6 N -0.460 5.460 7 C 0.082 3.918 8 C -0.041 4.041 9 C 0.465 3.535 10 O -0.510 6.510 11 O -0.339 6.339 12 C 0.076 3.924 13 C 0.062 3.938 14 O -0.391 6.391 15 C 0.194 3.806 16 C -0.514 4.514 17 H 0.067 0.933 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.244 4.244 25 S 0.126 5.874 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.006 0.994 42 H 0.008 0.992 43 H 0.264 0.736 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 5.162 30.322 30.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.007 3.993 3 C -0.192 4.192 4 C -0.212 4.212 5 C -0.218 4.218 6 N -0.173 5.173 7 C -0.050 4.050 8 C -0.081 4.081 9 C 0.307 3.693 10 O -0.399 6.399 11 O -0.255 6.255 12 C 0.002 3.998 13 C -0.016 4.016 14 O -0.311 6.311 15 C 0.119 3.881 16 C -0.552 4.552 17 H 0.085 0.915 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.736 3.264 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.383 4.383 25 S 0.383 5.617 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.025 0.975 43 H 0.073 0.927 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.206 4.691 31.081 31.597 hybrid contribution 0.167 -0.223 -1.781 1.803 sum 3.373 4.468 29.300 29.830 Atomic orbital electron populations 1.21842 0.92149 1.02531 1.02803 1.19235 0.96712 0.95177 0.88171 1.21838 1.01099 0.93431 1.02881 1.22029 1.01637 1.00780 0.96748 1.27003 1.00666 0.97820 0.96285 1.65869 1.22247 1.30684 0.98506 1.19397 0.97546 0.93185 0.94865 1.19766 0.97065 1.02210 0.89099 1.23306 0.84385 0.80923 0.80636 1.90654 1.54190 1.37210 1.57809 1.86586 1.49199 1.62486 1.27266 1.23207 0.86567 0.95203 0.94809 1.22325 0.91432 0.99308 0.88540 1.87912 1.38721 1.83363 1.21086 1.20248 0.97543 0.95740 0.74526 1.21084 1.02644 1.40283 0.91197 0.91464 1.24959 0.97087 0.95393 0.97150 1.69970 1.31437 1.45084 1.07260 0.86271 0.82300 0.78466 0.79396 1.19477 1.20849 1.20806 1.26862 1.09034 1.04699 0.97706 1.83858 1.47243 1.27660 1.02978 0.91377 0.91627 0.92431 0.91622 0.92496 0.91350 0.91790 0.91815 0.90641 0.85817 0.85642 0.90535 0.90488 0.91950 0.93137 0.97609 0.97452 0.92683 0.80465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 8.45 37.16 0.31 -0.72 16 2 C 0.01 0.08 0.99 -155.66 -0.15 -0.07 16 3 C -0.13 -0.90 8.45 37.15 0.31 -0.59 16 4 C -0.15 -0.85 7.54 37.16 0.28 -0.57 16 5 C 0.06 0.63 5.78 -13.46 -0.08 0.55 16 6 N -0.46 -5.72 10.51 -8.06 -0.08 -5.80 16 7 C 0.08 1.00 5.23 -84.23 -0.44 0.56 16 8 C -0.04 -0.48 6.22 -29.03 -0.18 -0.66 16 9 C 0.47 7.09 7.95 36.01 0.29 7.38 16 10 O -0.51 -8.92 15.78 -18.75 -0.30 -9.22 16 11 O -0.34 -5.74 10.19 -42.02 -0.43 -6.17 16 12 C 0.08 1.24 5.84 37.15 0.22 1.45 16 13 C 0.06 1.14 6.33 37.15 0.24 1.38 16 14 O -0.39 -9.52 10.30 -38.80 -0.40 -9.92 16 15 C 0.19 5.31 5.69 36.01 0.20 5.52 16 16 C -0.51 -15.18 9.43 -34.44 -0.32 -15.50 16 17 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 20 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.24 -2.65 11.14 29.12 0.32 -2.33 16 25 S 0.13 1.15 21.57 -107.50 -2.32 -1.16 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.36 7.93 -51.93 -0.41 -0.05 16 33 H 0.06 0.33 7.92 -51.93 -0.41 -0.08 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 38 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 39 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.01 0.17 8.14 -51.92 -0.42 -0.25 16 42 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -34.66 389.15 -8.18 -42.83 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -7.13 Total: -5.03 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 0.90 Total: -2.12 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.65 Total: -31.90 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.12 Total: -25.31 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.32 Total: -1.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.66 -8.18 -42.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815204895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.085 kcal (2) G-P(sol) polarization free energy of solvation -34.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds