Wall clock time and date at job start Tue Mar 31 2020 14:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.29028 * 124.91991 * 60.00024 * 5 2 1 7 7 C 1.31778 * 117.12837 * 179.97438 * 6 5 2 8 8 C 1.50702 * 122.74764 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46945 * 264.99918 * 8 7 6 10 10 O 1.20820 * 119.99907 * 0.02562 * 9 8 7 11 11 O 1.34229 * 120.00114 * 180.02562 * 9 8 7 12 12 C 1.45199 * 117.00223 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47026 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.47293 * 65.00376 * 13 12 11 15 15 C 1.42898 * 114.00119 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47431 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99497 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00286 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99994 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99921 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47395 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47440 * 119.99891 * 20 18 16 23 23 H 1.48503 * 109.47320 * 240.00305 * 20 18 16 24 24 C 1.33636 * 114.50124 * 359.97438 * 7 6 5 25 25 S 1.70982 * 124.91863 * 239.69654 * 5 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.09000 * 109.47322 * 24.99797 * 8 7 6 36 36 H 1.09002 * 109.46976 * 144.99955 * 8 7 6 37 37 H 1.08998 * 109.46794 * 300.00201 * 12 11 9 38 38 H 1.08995 * 109.47007 * 59.99796 * 12 11 9 39 39 H 1.09008 * 109.47319 * 184.99836 * 13 12 11 40 40 H 1.09002 * 109.47692 * 304.99923 * 13 12 11 41 41 H 1.09007 * 109.46769 * 299.99360 * 15 14 13 42 42 H 1.08998 * 109.47447 * 59.99333 * 15 14 13 43 43 H 0.97001 * 119.99561 * 179.97438 * 19 18 16 44 44 H 1.08000 * 126.03728 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 1.7798 -0.3533 -2.4443 7 6 2.2996 -1.0875 -3.4072 8 6 2.0867 -0.7854 -4.8682 9 6 0.9295 -1.6000 -5.3862 10 8 0.3381 -2.3487 -4.6449 11 8 0.5559 -1.4939 -6.6710 12 6 -0.5665 -2.3087 -7.1007 13 6 -0.8436 -2.0539 -8.5836 14 8 0.2688 -2.5031 -9.3601 15 6 0.1114 -2.3096 -10.7671 16 6 1.3366 -2.8155 -11.4840 17 1 2.1536 -3.2426 -10.9213 18 6 1.4142 -2.7342 -12.8582 19 7 0.4191 -2.2146 -13.5434 20 14 2.9326 -3.3620 -13.7467 21 1 3.9014 -3.8948 -12.7554 22 1 2.5438 -4.4417 -14.6892 23 1 3.5603 -2.2480 -14.5020 24 6 3.0319 -2.1214 -2.9820 25 16 3.0255 -2.1021 -1.2202 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 1.8685 0.2754 -4.9919 36 1 2.9880 -1.0384 -5.4266 37 1 -0.3292 -3.3619 -6.9507 38 1 -1.4491 -2.0484 -6.5165 39 1 -1.7396 -2.5970 -8.8844 40 1 -0.9936 -0.9867 -8.7471 41 1 -0.7649 -2.8577 -11.1135 42 1 -0.0186 -1.2476 -10.9756 43 1 0.4739 -2.1571 -14.5101 44 1 3.5408 -2.8395 -3.6077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815204895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:47 Heat of formation + Delta-G solvation = -128.920192 kcal Electronic energy + Delta-G solvation = -24612.519222 eV Core-core repulsion = 20848.705298 eV Total energy + Delta-G solvation = -3763.813924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80887 -40.82839 -38.78716 -37.87472 -37.32093 -34.95612 -33.09902 -31.62419 -29.47700 -28.87759 -28.32941 -28.18767 -26.12248 -24.60783 -23.97478 -22.54899 -20.90270 -20.30878 -18.94680 -18.71540 -18.55385 -17.93600 -17.49702 -17.07376 -16.69697 -16.37768 -16.22579 -15.80961 -15.20698 -15.12165 -15.03147 -14.61783 -14.54160 -14.19953 -14.07240 -13.70144 -13.45065 -13.23252 -13.08559 -13.02951 -12.89155 -12.73236 -12.62227 -12.46974 -12.45800 -12.29460 -12.02877 -11.98322 -11.90214 -11.76730 -11.63075 -11.27492 -10.91200 -10.60143 -10.35181 -10.28682 -9.77170 -8.33081 -6.45147 -0.29908 0.38451 0.71874 1.10776 1.34590 1.40285 1.41542 1.56225 2.02460 2.34005 2.92581 3.00877 3.03921 3.53850 3.72663 3.89884 3.91456 3.95049 4.01271 4.08005 4.17859 4.35038 4.38901 4.42911 4.48822 4.62417 4.64816 4.71732 4.73904 4.83384 4.84514 4.93415 4.96123 4.96827 5.07342 5.16570 5.24866 5.34664 5.37596 5.40618 5.53875 5.94187 6.48312 6.64851 6.73403 6.78601 7.26367 8.79316 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.001977 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.479988 B =14162.280766 C =14698.357921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.007 3.993 3 C -0.130 4.130 4 C -0.152 4.152 5 C 0.050 3.950 6 N -0.488 5.488 7 C 0.061 3.939 8 C -0.036 4.036 9 C 0.467 3.533 10 O -0.536 6.536 11 O -0.355 6.355 12 C 0.079 3.921 13 C 0.054 3.946 14 O -0.408 6.408 15 C 0.207 3.793 16 C -0.548 4.548 17 H 0.061 0.939 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.984 3.016 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.260 4.260 25 S 0.166 5.834 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.057 0.943 41 H -0.008 1.008 42 H -0.010 1.010 43 H 0.271 0.729 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 5.036 31.609 32.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.003 3.997 3 C -0.188 4.188 4 C -0.210 4.210 5 C -0.228 4.228 6 N -0.203 5.203 7 C -0.071 4.071 8 C -0.076 4.076 9 C 0.311 3.689 10 O -0.426 6.426 11 O -0.272 6.272 12 C 0.006 3.994 13 C -0.023 4.023 14 O -0.328 6.328 15 C 0.132 3.868 16 C -0.586 4.586 17 H 0.079 0.921 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.806 3.194 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.399 4.399 25 S 0.424 5.576 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.010 0.990 42 H 0.008 0.992 43 H 0.080 0.920 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.404 4.571 32.393 33.009 hybrid contribution -0.280 -0.166 -2.074 2.099 sum 4.125 4.405 30.320 30.914 Atomic orbital electron populations 1.21822 0.92377 1.01943 1.02900 1.19431 0.96532 0.95724 0.88005 1.21810 1.01159 0.92849 1.03021 1.22040 1.01966 1.00623 0.96327 1.27586 1.00404 0.98262 0.96583 1.65890 1.23322 1.31703 0.99337 1.19528 0.98495 0.94015 0.95045 1.19878 0.96311 1.02124 0.89305 1.23969 0.84660 0.80619 0.79670 1.90633 1.55263 1.38533 1.58141 1.86585 1.49482 1.62670 1.28425 1.23161 0.87726 0.95016 0.93493 1.22635 0.90571 0.99907 0.89140 1.87857 1.41412 1.83829 1.19714 1.19891 0.96442 0.94169 0.76302 1.21407 1.03362 1.41576 0.92265 0.92110 1.25962 1.00589 0.95016 0.97719 1.70068 1.33411 1.45375 1.07976 0.85128 0.77933 0.78270 0.78022 1.18885 1.19661 1.19585 1.27172 1.08837 1.04575 0.99295 1.83641 1.46145 1.26514 1.01333 0.93527 0.89242 0.93325 0.89476 0.92332 0.93184 0.91980 0.91291 0.88584 0.84676 0.83463 0.91021 0.87798 0.90047 0.92488 0.99022 0.99207 0.92003 0.79274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.45 71.98 0.61 -1.32 16 2 C 0.01 0.10 0.99 -52.93 -0.05 0.04 16 3 C -0.13 -1.59 8.45 71.98 0.61 -0.98 16 4 C -0.15 -1.35 7.54 71.98 0.54 -0.80 16 5 C 0.05 1.00 5.78 88.52 0.51 1.51 16 6 N -0.49 -12.13 10.51 -179.40 -1.89 -14.01 16 7 C 0.06 1.47 5.23 41.52 0.22 1.69 16 8 C -0.04 -0.83 6.22 29.10 0.18 -0.65 16 9 C 0.47 14.18 7.95 71.24 0.57 14.75 16 10 O -0.54 -18.78 15.78 21.98 0.35 -18.43 16 11 O -0.36 -11.98 10.19 -48.76 -0.50 -12.47 16 12 C 0.08 2.56 5.84 71.98 0.42 2.98 16 13 C 0.05 2.01 6.33 71.98 0.46 2.46 16 14 O -0.41 -20.18 10.30 -145.57 -1.50 -21.68 16 15 C 0.21 11.64 5.69 71.24 0.41 12.04 16 16 C -0.55 -32.85 9.43 25.60 0.24 -32.60 16 17 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 18 C 0.01 0.33 5.46 84.65 0.46 0.79 16 19 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 20 Si 0.98 44.38 29.54 68.60 2.03 46.40 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 C -0.26 -5.47 11.14 66.78 0.74 -4.73 16 25 S 0.17 2.86 21.57 -56.49 -1.22 1.64 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.58 7.93 -2.39 -0.02 0.56 16 33 H 0.07 0.55 7.92 -2.39 -0.02 0.53 16 34 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 38 H 0.10 2.79 8.13 -2.39 -0.02 2.77 16 39 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 41 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.19 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -74.80 389.15 4.44 -70.35 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.97 Total: 8.40 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 5.91 Total: -4.82 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -1.60 Total: -69.39 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -1.65 Total: -52.59 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.22 Total: 1.64 kcal Total: -74.80 4.44 -70.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815204895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.567 kcal (2) G-P(sol) polarization free energy of solvation -74.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds