Wall clock time and date at job start Tue Mar 31 2020 14:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29394 * 124.70292 * 2 1 4 4 C 1.30913 * 117.46617 * 180.02562 * 3 2 1 5 5 C 1.50697 * 123.03448 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47175 * 90.02711 * 5 4 3 7 7 C 1.52999 * 109.47554 * 64.99685 * 6 5 4 8 8 C 1.53003 * 109.47191 * 185.00127 * 6 5 4 9 9 C 1.36767 * 113.93251 * 359.97438 * 4 3 2 10 10 C 1.46502 * 126.17715 * 180.02562 * 9 4 3 11 11 O 1.21613 * 120.00143 * 359.94784 * 10 9 4 12 12 O 1.34872 * 119.99575 * 179.97438 * 10 9 4 13 13 C 1.45203 * 117.00071 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47217 * 179.97438 * 13 12 10 15 15 O 1.42894 * 109.47451 * 64.99752 * 14 13 12 16 16 C 1.42904 * 114.00103 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47314 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99708 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00266 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99682 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00327 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46897 * 90.00498 * 21 19 17 23 23 H 1.48496 * 109.47254 * 210.00356 * 21 19 17 24 24 H 1.48501 * 109.47079 * 330.00511 * 21 19 17 25 25 S 1.70920 * 124.70986 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46997 * 90.00095 * 1 2 3 27 27 H 1.09000 * 109.46633 * 210.00011 * 1 2 3 28 28 H 1.09003 * 109.46993 * 329.99423 * 1 2 3 29 29 H 1.09004 * 109.46961 * 210.02029 * 5 4 3 30 30 H 1.08996 * 109.47626 * 330.02703 * 5 4 3 31 31 H 1.09009 * 109.47006 * 304.99709 * 6 5 4 32 32 H 1.08998 * 109.47090 * 179.97438 * 7 6 5 33 33 H 1.08992 * 109.46977 * 300.00031 * 7 6 5 34 34 H 1.09001 * 109.46627 * 59.99974 * 7 6 5 35 35 H 1.09001 * 109.46997 * 59.99503 * 8 6 5 36 36 H 1.08995 * 109.47048 * 179.97438 * 8 6 5 37 37 H 1.08996 * 109.47049 * 299.99532 * 8 6 5 38 38 H 1.09010 * 109.46269 * 299.99777 * 13 12 10 39 39 H 1.08999 * 109.47231 * 59.98836 * 13 12 10 40 40 H 1.09005 * 109.47177 * 184.99442 * 14 13 12 41 41 H 1.09001 * 109.46872 * 304.99206 * 14 13 12 42 42 H 1.09000 * 109.47054 * 299.99400 * 16 15 14 43 43 H 1.08998 * 109.47254 * 59.99353 * 16 15 14 44 44 H 0.97004 * 119.99837 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0638 0.0000 4 6 3.5424 0.8989 -0.0005 5 6 4.5165 2.0487 -0.0011 6 6 4.8473 2.4376 1.4412 7 6 5.5837 1.2837 2.1246 8 6 5.7370 3.6824 1.4424 9 6 3.9353 -0.4112 -0.0004 10 6 5.3165 -0.8997 -0.0004 11 8 6.2410 -0.1097 -0.0014 12 8 5.5626 -2.2258 0.0002 13 6 6.9549 -2.6379 0.0008 14 6 7.0346 -4.1657 0.0021 15 8 6.4910 -4.6721 -1.2186 16 6 6.5171 -6.0974 -1.3193 17 6 5.9225 -6.5187 -2.6384 18 1 5.5604 -5.7727 -3.3304 19 6 5.8406 -7.8565 -2.9619 20 7 6.2811 -8.7649 -2.1190 21 14 5.1029 -8.3788 -4.5966 22 1 6.1743 -8.4515 -5.6224 23 1 4.4674 -9.7128 -4.4492 24 1 4.0808 -7.3873 -5.0178 25 16 2.4803 -1.4050 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 5.4301 1.7506 -0.5157 30 1 4.0720 2.9013 -0.5145 31 1 3.9244 2.6502 1.9810 32 1 5.8197 1.5611 3.1519 33 1 4.9498 0.3970 2.1237 34 1 6.5065 1.0712 1.5848 35 1 5.2124 4.5045 0.9555 36 1 5.9723 3.9597 2.4699 37 1 6.6599 3.4699 0.9027 38 1 7.4493 -2.2486 -0.8894 39 1 7.4489 -2.2478 0.8906 40 1 8.0759 -4.4752 0.0920 41 1 6.4648 -4.5585 0.8442 42 1 7.5475 -6.4472 -1.2567 43 1 5.9364 -6.5299 -0.5047 44 1 6.2231 -9.7061 -2.3464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815217549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:13 Heat of formation + Delta-G solvation = -107.671856 kcal Electronic energy + Delta-G solvation = -25474.961285 eV Core-core repulsion = 21712.068757 eV Total energy + Delta-G solvation = -3762.892527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83579 -39.69398 -37.16557 -36.42872 -35.75131 -32.80993 -32.60086 -30.38751 -29.09363 -28.11331 -27.19338 -26.88922 -23.55413 -23.07171 -22.38206 -21.68819 -20.38844 -19.62214 -18.32624 -17.02844 -16.66667 -16.62765 -16.23344 -15.64849 -15.40169 -15.08381 -14.69536 -14.44241 -14.31207 -14.07593 -14.03112 -13.64675 -13.06626 -12.91730 -12.78721 -12.65721 -12.49755 -12.44003 -12.05869 -11.92593 -11.54950 -11.45079 -11.08413 -11.06637 -10.91578 -10.86838 -10.85704 -10.72713 -10.42694 -10.25112 -10.07963 -9.89899 -9.65619 -9.15351 -8.90425 -8.88161 -8.23960 -6.14020 -4.15727 -0.03653 1.00687 1.46343 2.12917 2.66132 2.83067 3.28611 3.33647 3.39111 3.71622 4.30300 4.52804 4.60763 4.68875 4.80681 4.84629 4.92153 5.01209 5.09932 5.14507 5.17915 5.22644 5.42015 5.45678 5.51084 5.54767 5.60236 5.69444 5.79341 5.82665 5.84888 5.88792 5.93852 6.02945 6.11143 6.18264 6.28079 6.59859 7.02637 7.37187 7.40799 7.74666 7.76616 8.10136 8.49594 8.96755 9.49117 10.97528 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.002923 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.595803 B = 9578.348960 C =10978.741625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.046 3.954 3 N -0.481 5.481 4 C 0.165 3.835 5 C -0.055 4.055 6 C -0.081 4.081 7 C -0.153 4.153 8 C -0.143 4.143 9 C -0.295 4.295 10 C 0.543 3.457 11 O -0.493 6.493 12 O -0.338 6.338 13 C 0.078 3.922 14 C 0.061 3.939 15 O -0.391 6.391 16 C 0.195 3.805 17 C -0.515 4.515 18 H 0.067 0.933 19 C 0.056 3.944 20 N -0.899 5.899 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.271 1.271 25 S 0.231 5.769 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.006 0.994 43 H 0.007 0.993 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 21.092 9.006 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.227 4.227 3 N -0.196 5.196 4 C 0.025 3.975 5 C -0.094 4.094 6 C -0.100 4.100 7 C -0.210 4.210 8 C -0.201 4.201 9 C -0.417 4.417 10 C 0.387 3.613 11 O -0.383 6.383 12 O -0.254 6.254 13 C 0.004 3.996 14 C -0.017 4.017 15 O -0.311 6.311 16 C 0.121 3.879 17 C -0.553 4.553 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 S 0.491 5.509 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.800 20.537 8.877 23.694 hybrid contribution 0.448 -0.024 -0.584 0.736 sum -7.351 20.513 8.293 23.315 Atomic orbital electron populations 1.20543 0.84635 1.04599 1.04402 1.27567 1.02488 0.92321 1.00352 1.66076 1.04097 1.31443 1.18007 1.20894 0.89900 0.92763 0.93984 1.20613 0.96893 0.93450 0.98492 1.20955 0.98814 0.95802 0.94418 1.22136 1.01716 0.97381 0.99737 1.21797 0.99825 0.96705 1.01746 1.24757 0.96329 0.96994 1.23644 1.19235 0.87199 0.81462 0.73405 1.90781 1.44974 1.56350 1.46232 1.86687 1.31943 1.23277 1.83485 1.23266 0.78205 0.95364 1.02760 1.22329 0.98415 0.90350 0.90565 1.87922 1.82622 1.25732 1.34792 1.20238 0.95952 0.74199 0.97561 1.21044 1.40244 0.92000 1.02017 0.91523 1.24946 0.95610 0.96078 0.97844 1.69962 1.46817 1.01114 1.35891 0.86332 0.79344 0.77859 0.82952 1.20444 1.21037 1.19581 1.84494 0.94600 1.08586 1.63230 0.88985 0.89592 0.88982 0.87690 0.90060 0.91528 0.93499 0.93785 0.90107 0.92724 0.92627 0.92218 0.90226 0.90198 0.91763 0.93185 0.97598 0.97492 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 36.01 0.38 -0.16 16 2 C 0.05 0.49 7.37 -13.30 -0.10 0.39 16 3 N -0.48 -5.99 10.49 -7.47 -0.08 -6.07 16 4 C 0.17 2.16 5.61 -83.52 -0.47 1.69 16 5 C -0.05 -0.63 4.82 -27.88 -0.13 -0.77 16 6 C -0.08 -0.84 2.91 -90.62 -0.26 -1.10 16 7 C -0.15 -1.75 7.63 37.16 0.28 -1.46 16 8 C -0.14 -1.22 9.19 37.16 0.34 -0.88 16 9 C -0.29 -4.16 5.52 -36.79 -0.20 -4.36 16 10 C 0.54 8.45 6.87 34.06 0.23 8.69 16 11 O -0.49 -7.63 10.82 -19.35 -0.21 -7.84 16 12 O -0.34 -5.76 10.09 -43.75 -0.44 -6.20 16 13 C 0.08 1.21 5.86 37.15 0.22 1.43 16 14 C 0.06 1.10 6.33 37.15 0.24 1.34 16 15 O -0.39 -9.43 10.30 -38.80 -0.40 -9.82 16 16 C 0.19 5.30 5.69 36.01 0.20 5.50 16 17 C -0.51 -15.14 9.43 -34.44 -0.32 -15.46 16 18 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 21 Si 0.91 21.75 29.54 -169.99 -5.02 16.72 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 S 0.23 2.81 23.04 -107.50 -2.48 0.34 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.10 1.32 6.06 -51.93 -0.31 1.00 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.56 5.79 -51.93 -0.30 0.26 16 34 H 0.08 1.02 5.92 -51.93 -0.31 0.71 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -32.86 378.04 -8.70 -41.56 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -6.81 Total: -4.80 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 0.30 Total: -3.64 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.66 Total: -32.02 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -1.05 Total: -23.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.48 Total: 0.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.86 -8.70 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815217549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.115 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds