Wall clock time and date at job start Tue Mar 31 2020 14:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29394 * 124.70292 * 2 1 4 4 C 1.30913 * 117.46617 * 180.02562 * 3 2 1 5 5 C 1.50697 * 123.03448 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47175 * 90.02711 * 5 4 3 7 7 C 1.52999 * 109.47554 * 64.99685 * 6 5 4 8 8 C 1.53003 * 109.47191 * 185.00127 * 6 5 4 9 9 C 1.36767 * 113.93251 * 359.97438 * 4 3 2 10 10 C 1.46502 * 126.17715 * 180.02562 * 9 4 3 11 11 O 1.21613 * 120.00143 * 359.94784 * 10 9 4 12 12 O 1.34872 * 119.99575 * 179.97438 * 10 9 4 13 13 C 1.45203 * 117.00071 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47217 * 179.97438 * 13 12 10 15 15 O 1.42894 * 109.47451 * 64.99752 * 14 13 12 16 16 C 1.42904 * 114.00103 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47314 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99708 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00266 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99682 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00327 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46897 * 90.00498 * 21 19 17 23 23 H 1.48496 * 109.47254 * 210.00356 * 21 19 17 24 24 H 1.48501 * 109.47079 * 330.00511 * 21 19 17 25 25 S 1.70920 * 124.70986 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46997 * 90.00095 * 1 2 3 27 27 H 1.09000 * 109.46633 * 210.00011 * 1 2 3 28 28 H 1.09003 * 109.46993 * 329.99423 * 1 2 3 29 29 H 1.09004 * 109.46961 * 210.02029 * 5 4 3 30 30 H 1.08996 * 109.47626 * 330.02703 * 5 4 3 31 31 H 1.09009 * 109.47006 * 304.99709 * 6 5 4 32 32 H 1.08998 * 109.47090 * 179.97438 * 7 6 5 33 33 H 1.08992 * 109.46977 * 300.00031 * 7 6 5 34 34 H 1.09001 * 109.46627 * 59.99974 * 7 6 5 35 35 H 1.09001 * 109.46997 * 59.99503 * 8 6 5 36 36 H 1.08995 * 109.47048 * 179.97438 * 8 6 5 37 37 H 1.08996 * 109.47049 * 299.99532 * 8 6 5 38 38 H 1.09010 * 109.46269 * 299.99777 * 13 12 10 39 39 H 1.08999 * 109.47231 * 59.98836 * 13 12 10 40 40 H 1.09005 * 109.47177 * 184.99442 * 14 13 12 41 41 H 1.09001 * 109.46872 * 304.99206 * 14 13 12 42 42 H 1.09000 * 109.47054 * 299.99400 * 16 15 14 43 43 H 1.08998 * 109.47254 * 59.99353 * 16 15 14 44 44 H 0.97004 * 119.99837 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0638 0.0000 4 6 3.5424 0.8989 -0.0005 5 6 4.5165 2.0487 -0.0011 6 6 4.8473 2.4376 1.4412 7 6 5.5837 1.2837 2.1246 8 6 5.7370 3.6824 1.4424 9 6 3.9353 -0.4112 -0.0004 10 6 5.3165 -0.8997 -0.0004 11 8 6.2410 -0.1097 -0.0014 12 8 5.5626 -2.2258 0.0002 13 6 6.9549 -2.6379 0.0008 14 6 7.0346 -4.1657 0.0021 15 8 6.4910 -4.6721 -1.2186 16 6 6.5171 -6.0974 -1.3193 17 6 5.9225 -6.5187 -2.6384 18 1 5.5604 -5.7727 -3.3304 19 6 5.8406 -7.8565 -2.9619 20 7 6.2811 -8.7649 -2.1190 21 14 5.1029 -8.3788 -4.5966 22 1 6.1743 -8.4515 -5.6224 23 1 4.4674 -9.7128 -4.4492 24 1 4.0808 -7.3873 -5.0178 25 16 2.4803 -1.4050 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 5.4301 1.7506 -0.5157 30 1 4.0720 2.9013 -0.5145 31 1 3.9244 2.6502 1.9810 32 1 5.8197 1.5611 3.1519 33 1 4.9498 0.3970 2.1237 34 1 6.5065 1.0712 1.5848 35 1 5.2124 4.5045 0.9555 36 1 5.9723 3.9597 2.4699 37 1 6.6599 3.4699 0.9027 38 1 7.4493 -2.2486 -0.8894 39 1 7.4489 -2.2478 0.8906 40 1 8.0759 -4.4752 0.0920 41 1 6.4648 -4.5585 0.8442 42 1 7.5475 -6.4472 -1.2567 43 1 5.9364 -6.5299 -0.5047 44 1 6.2231 -9.7061 -2.3464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815217549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:12 Heat of formation + Delta-G solvation = -127.086669 kcal Electronic energy + Delta-G solvation = -25475.803174 eV Core-core repulsion = 21712.068757 eV Total energy + Delta-G solvation = -3763.734417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.90575 -40.78956 -38.76857 -37.67862 -36.82353 -34.96112 -33.44314 -31.82446 -30.04384 -29.20295 -28.81382 -27.97501 -24.78372 -24.44000 -23.99566 -22.99588 -21.23424 -20.69184 -19.37850 -18.68054 -18.08849 -18.00509 -17.53584 -17.18975 -16.52010 -16.37845 -16.16204 -16.01633 -15.43574 -15.15135 -14.92445 -14.82053 -14.37468 -14.20646 -13.78241 -13.59858 -13.45582 -13.28236 -13.25570 -13.18943 -13.00398 -12.82436 -12.70763 -12.51439 -12.36440 -12.05744 -11.92659 -11.88401 -11.76154 -11.69019 -11.31876 -11.27034 -10.92382 -10.85226 -10.64010 -10.29285 -9.81811 -8.33542 -6.45726 -1.00224 0.06998 0.51758 1.09799 1.39547 1.42050 1.50121 1.54216 1.75719 2.33474 2.87985 3.00412 3.03855 3.57261 3.74683 3.81712 3.89076 3.98706 4.06676 4.08351 4.18997 4.38895 4.48279 4.53721 4.62048 4.63822 4.64298 4.69985 4.80024 4.83539 4.86824 4.94904 4.98316 5.07241 5.12392 5.15679 5.22185 5.26699 5.40257 5.52804 5.56295 5.93638 6.45582 6.47539 6.57124 6.77811 7.25862 8.78658 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.002923 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.595803 B = 9578.348960 C =10978.741625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.070 3.930 3 N -0.498 5.498 4 C 0.172 3.828 5 C -0.055 4.055 6 C -0.076 4.076 7 C -0.148 4.148 8 C -0.139 4.139 9 C -0.328 4.328 10 C 0.542 3.458 11 O -0.499 6.499 12 O -0.358 6.358 13 C 0.082 3.918 14 C 0.053 3.947 15 O -0.410 6.410 16 C 0.209 3.791 17 C -0.550 4.550 18 H 0.059 0.941 19 C 0.008 3.992 20 N -0.929 5.929 21 Si 0.981 3.019 22 H -0.268 1.268 23 H -0.272 1.272 24 H -0.265 1.265 25 S 0.212 5.788 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.055 0.945 42 H -0.007 1.007 43 H -0.011 1.011 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 22.168 8.700 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.203 4.203 3 N -0.214 5.214 4 C 0.031 3.969 5 C -0.095 4.095 6 C -0.095 4.095 7 C -0.205 4.205 8 C -0.196 4.196 9 C -0.450 4.450 10 C 0.387 3.613 11 O -0.390 6.390 12 O -0.275 6.275 13 C 0.009 3.991 14 C -0.023 4.023 15 O -0.330 6.330 16 C 0.134 3.866 17 C -0.588 4.588 18 H 0.077 0.923 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.804 3.196 22 H -0.193 1.193 23 H -0.197 1.197 24 H -0.190 1.190 25 S 0.472 5.528 26 H 0.128 0.872 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.010 0.990 43 H 0.007 0.993 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.162 21.628 8.589 25.010 hybrid contribution 0.827 -0.284 -0.406 0.963 sum -8.335 21.344 8.184 24.332 Atomic orbital electron populations 1.20831 0.81432 1.06243 1.05931 1.28329 1.03997 0.90963 0.97006 1.66183 1.03830 1.31871 1.19469 1.21174 0.90521 0.92765 0.92407 1.20662 0.96123 0.93374 0.99312 1.20934 0.99068 0.96144 0.93376 1.22074 1.00803 0.97233 1.00426 1.21767 0.99300 0.96027 1.02540 1.24710 0.96106 0.97764 1.26376 1.19430 0.87939 0.80823 0.73152 1.90768 1.45358 1.56146 1.46693 1.86668 1.32466 1.24426 1.83958 1.23260 0.78230 0.93497 1.04155 1.22658 0.99392 0.91913 0.88387 1.87867 1.83413 1.23770 1.37928 1.19867 0.94502 0.75925 0.96319 1.21371 1.41649 0.92731 1.03028 0.92289 1.25928 0.95470 0.95729 1.01915 1.70059 1.47134 1.01716 1.37871 0.85212 0.78745 0.77785 0.77865 1.19302 1.19720 1.18964 1.84507 0.94563 1.09645 1.64118 0.87231 0.87553 0.87639 0.88998 0.88831 0.91420 0.92265 0.95450 0.91459 0.91516 0.91599 0.92642 0.90594 0.86948 0.89675 0.92675 0.98961 0.99289 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.46 71.24 0.75 -0.13 16 2 C 0.07 1.39 7.37 88.47 0.65 2.04 16 3 N -0.50 -11.82 10.49 -177.55 -1.86 -13.68 16 4 C 0.17 4.45 5.61 42.35 0.24 4.69 16 5 C -0.06 -1.24 4.82 29.85 0.14 -1.10 16 6 C -0.08 -1.51 2.91 -10.79 -0.03 -1.54 16 7 C -0.15 -3.35 7.63 71.98 0.55 -2.80 16 8 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16 9 C -0.33 -9.38 5.52 24.08 0.13 -9.25 16 10 C 0.54 17.26 6.87 69.98 0.48 17.74 16 11 O -0.50 -15.71 10.82 19.47 0.21 -15.50 16 12 O -0.36 -12.49 10.09 -55.20 -0.56 -13.05 16 13 C 0.08 2.56 5.86 71.98 0.42 2.98 16 14 C 0.05 1.94 6.33 71.98 0.46 2.40 16 15 O -0.41 -20.28 10.30 -145.57 -1.50 -21.78 16 16 C 0.21 11.71 5.69 71.24 0.41 12.12 16 17 C -0.55 -32.99 9.43 25.60 0.24 -32.75 16 18 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 19 C 0.01 0.48 5.46 84.65 0.46 0.94 16 20 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 21 Si 0.98 44.30 29.54 68.60 2.03 46.33 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 S 0.21 5.15 23.04 -56.49 -1.30 3.85 16 26 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 2.33 6.06 -2.38 -0.01 2.31 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.03 0.69 5.79 -2.39 -0.01 0.68 16 34 H 0.07 1.70 5.92 -2.39 -0.01 1.69 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -71.40 378.04 3.85 -67.55 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.99 Total: 7.62 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 5.56 Total: -6.15 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -1.58 Total: -68.87 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -1.85 Total: -50.33 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -1.30 Total: 3.85 kcal Total: -71.40 3.85 -67.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815217549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.540 kcal (2) G-P(sol) polarization free energy of solvation -71.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds