Wall clock time and date at job start Tue Mar 31 2020 15:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.53001 * 109.47275 * 275.27738 * 3 2 1 5 5 C 1.52996 * 109.47349 * 59.99305 * 4 3 2 6 6 O 1.42903 * 109.46701 * 299.99540 * 4 3 2 7 7 C 1.50695 * 109.47164 * 179.97438 * 4 3 2 8 8 C 1.38239 * 120.00206 * 329.72284 * 7 4 3 9 9 C 1.38232 * 120.00339 * 179.79528 * 8 7 4 10 10 C 1.38237 * 119.99854 * 0.43246 * 9 8 7 11 11 C 1.38233 * 120.00032 * 359.82185 * 10 9 8 12 12 C 1.38234 * 120.00090 * 359.97063 * 11 10 9 13 13 S 1.65608 * 119.99916 * 180.27320 * 2 1 3 14 14 O 1.42105 * 104.27567 * 25.79731 * 13 2 1 15 15 O 1.42099 * 104.27801 * 153.65701 * 13 2 1 16 16 C 1.81397 * 104.44917 * 269.72772 * 13 2 1 17 17 C 1.53002 * 109.47293 * 179.97438 * 16 13 2 18 18 C 1.50702 * 109.47210 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00272 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99776 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99723 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99713 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47194 * 90.00551 * 22 20 18 24 24 H 1.48504 * 109.46916 * 209.99963 * 22 20 18 25 25 H 1.48499 * 109.47410 * 329.99959 * 22 20 18 26 26 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 27 27 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 28 28 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 29 29 H 1.09005 * 109.47101 * 35.27701 * 3 2 1 30 30 H 1.09001 * 109.47746 * 155.26944 * 3 2 1 31 31 H 1.09005 * 109.46482 * 60.00372 * 5 4 3 32 32 H 1.09000 * 109.46976 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.46999 * 300.00608 * 5 4 3 34 34 H 0.96703 * 113.99779 * 299.99816 * 6 4 3 35 35 H 1.07996 * 119.99544 * 359.97438 * 8 7 4 36 36 H 1.07994 * 120.00297 * 180.27533 * 9 8 7 37 37 H 1.08000 * 120.00111 * 179.83678 * 10 9 8 38 38 H 1.07996 * 120.00207 * 179.97438 * 11 10 9 39 39 H 1.07998 * 120.00054 * 180.02562 * 12 11 10 40 40 H 1.09001 * 109.47492 * 299.99928 * 16 13 2 41 41 H 1.09001 * 109.47146 * 59.99771 * 16 13 2 42 42 H 1.09001 * 109.47069 * 300.00526 * 17 16 13 43 43 H 1.09001 * 109.46935 * 59.99981 * 17 16 13 44 44 H 0.97001 * 119.99602 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3377 1.7767 -1.4364 5 6 0.9480 1.9901 -2.0398 6 8 3.0521 0.8141 -2.2144 7 6 3.0907 3.0820 -1.4363 8 6 2.9977 3.9336 -0.3513 9 6 3.6918 5.1290 -0.3494 10 6 4.4719 5.4770 -1.4363 11 6 4.5607 4.6279 -2.5235 12 6 3.8700 3.4305 -2.5236 13 16 2.2930 -1.4342 -0.0068 14 8 1.3943 -2.3547 -0.6106 15 8 3.5369 -1.1178 -0.6164 16 6 2.5265 -1.8304 1.7479 17 6 3.2885 -3.1510 1.8756 18 6 3.4831 -3.4798 3.3333 19 1 3.1011 -2.8138 4.0928 20 6 4.1479 -4.6315 3.6975 21 7 4.6127 -5.4428 2.7726 22 14 4.3885 -5.0394 5.5044 23 1 3.2392 -5.8467 5.9869 24 1 5.6437 -5.8146 5.6740 25 1 4.4738 -3.7814 6.2888 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3634 0.8924 -0.5096 28 1 -0.3634 -0.8874 -0.5181 29 1 1.6526 2.0028 0.5935 30 1 3.1875 1.1166 0.4299 31 1 0.4032 2.7243 -1.4462 32 1 1.0479 2.3516 -3.0632 33 1 0.4030 1.0462 -2.0397 34 1 3.9436 0.6289 -1.8889 35 1 2.3850 3.6635 0.4960 36 1 3.6227 5.7922 0.5001 37 1 5.0121 6.4122 -1.4359 38 1 5.1698 4.9000 -3.3728 39 1 3.9398 2.7669 -3.3728 40 1 3.0958 -1.0342 2.2275 41 1 1.5543 -1.9241 2.2317 42 1 2.7189 -3.9470 1.3960 43 1 4.2608 -3.0577 1.3916 44 1 5.0807 -6.2528 3.0288 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819913984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:06 Heat of formation + Delta-G solvation = -95.933472 kcal Electronic energy + Delta-G solvation = -26575.341754 eV Core-core repulsion = 22812.958241 eV Total energy + Delta-G solvation = -3762.383513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14491 -37.78936 -36.58771 -35.36514 -35.18303 -33.88790 -32.36442 -31.15637 -31.04859 -29.40834 -28.19013 -25.62587 -24.65856 -23.32237 -22.47002 -21.51388 -20.37836 -18.45726 -17.88399 -17.42922 -16.63227 -16.50119 -15.86545 -15.76569 -15.14968 -14.91219 -14.66616 -14.57281 -14.34404 -14.08932 -13.54121 -13.38365 -13.31785 -13.07478 -12.68807 -12.50656 -12.47770 -12.10912 -11.90493 -11.77237 -11.74262 -11.51395 -11.41882 -11.15849 -11.10744 -11.08143 -10.95646 -10.83148 -10.41145 -10.38089 -10.26246 -9.74001 -9.29167 -9.10604 -8.98945 -8.63574 -8.51003 -6.12977 -4.18665 0.77869 1.13038 1.21901 3.04628 3.25385 3.31598 3.34262 3.58295 4.19939 4.32651 4.38006 4.44399 4.64684 4.68517 4.69502 4.81440 4.85695 4.95639 5.09854 5.22067 5.25613 5.34855 5.41014 5.46409 5.56709 5.62786 5.67448 5.69163 5.74362 5.81933 5.84646 5.87550 6.01725 6.10910 6.27173 6.32773 6.42002 6.48781 6.65578 6.80500 7.29578 7.35735 7.79920 7.88799 8.17196 8.84723 9.46089 10.98041 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.003175 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.455552 B = 8815.924560 C = 9486.430106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -1.001 6.001 3 C 0.102 3.898 4 C 0.154 3.846 5 C -0.139 4.139 6 O -0.545 6.545 7 C -0.111 4.111 8 C -0.116 4.116 9 C -0.121 4.121 10 C -0.122 4.122 11 C -0.121 4.121 12 C -0.100 4.100 13 S 2.598 3.402 14 O -0.963 6.963 15 O -0.958 6.958 16 C -0.594 4.594 17 C 0.029 3.971 18 C -0.521 4.521 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.390 0.610 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.706 21.918 -7.403 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.836 5.836 3 C -0.025 4.025 4 C 0.111 3.889 5 C -0.196 4.196 6 O -0.353 6.353 7 C -0.112 4.112 8 C -0.134 4.134 9 C -0.139 4.139 10 C -0.141 4.141 11 C -0.139 4.139 12 C -0.118 4.118 13 S 2.696 3.304 14 O -0.954 6.954 15 O -0.949 6.949 16 C -0.727 4.727 17 C -0.010 4.010 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.242 0.758 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.926 21.303 -8.576 23.716 hybrid contribution 0.631 0.040 2.055 2.151 sum -5.295 21.343 -6.521 22.936 Atomic orbital electron populations 1.21759 0.79112 1.04360 1.01818 1.57525 1.14791 1.20942 1.90336 1.21980 0.97494 0.86461 0.96555 1.20370 0.92208 0.84772 0.91539 1.21905 0.93821 1.02652 1.01178 1.86496 1.33239 1.60573 1.55037 1.20578 0.98651 0.97054 0.94874 1.21127 0.99915 0.94401 0.97965 1.21134 0.97458 0.96856 0.98464 1.21177 0.99173 0.99647 0.94056 1.21177 0.99632 0.94579 0.98546 1.21069 0.96021 0.96488 0.98267 1.05522 0.73657 0.72465 0.78743 1.93517 1.64691 1.62094 1.75075 1.93424 1.44283 1.82571 1.74601 1.30544 1.10129 1.10582 1.21473 1.18950 0.94934 0.87177 0.99960 1.21008 1.37151 1.07031 0.90853 0.92097 1.25072 0.95307 0.96107 0.98006 1.69955 1.37336 1.12664 1.32846 0.86471 0.77764 0.78512 0.84551 1.20450 1.20975 1.19769 0.92950 0.90468 0.89739 0.89640 0.89494 0.91385 0.91961 0.90407 0.75812 0.85724 0.86064 0.86265 0.86094 0.85247 0.86504 0.86409 0.94926 0.94854 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 9.54 59.84 0.57 1.38 16 2 N -1.00 -13.25 2.83 -121.77 -0.34 -13.60 16 3 C 0.10 1.15 3.98 -4.04 -0.02 1.13 16 4 C 0.15 1.79 0.99 -91.78 -0.09 1.70 16 5 C -0.14 -1.43 7.48 37.16 0.28 -1.15 16 6 O -0.54 -7.87 10.43 -56.27 -0.59 -8.45 16 7 C -0.11 -1.17 4.80 -104.62 -0.50 -1.67 16 8 C -0.12 -1.07 9.14 -39.58 -0.36 -1.44 16 9 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 10 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 11 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 12 C -0.10 -1.05 9.35 -39.58 -0.37 -1.42 16 13 S 2.60 46.69 5.32 -107.50 -0.57 46.11 16 14 O -0.96 -20.32 16.57 -57.54 -0.95 -21.27 16 15 O -0.96 -18.63 14.05 -66.03 -0.93 -19.56 16 16 C -0.59 -11.44 6.12 37.16 0.23 -11.22 16 17 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 18 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 22 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.65 5.42 -51.93 -0.28 0.37 16 28 H 0.08 1.03 6.91 -51.93 -0.36 0.67 16 29 H 0.09 0.71 6.48 -51.93 -0.34 0.38 16 30 H 0.09 1.00 7.61 -51.93 -0.40 0.60 16 31 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.86 5.61 -51.93 -0.29 0.56 16 34 H 0.39 5.59 7.52 45.56 0.34 5.93 16 35 H 0.12 0.93 6.17 -52.49 -0.32 0.61 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 1.35 7.48 -52.49 -0.39 0.96 16 40 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 41 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -34.65 364.75 -9.98 -44.63 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.80 Total: 5.96 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -2.01 Total: -29.71 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.39 Total: -39.39 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -2.47 Total: -49.28 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 46.69 SS G_CDS: -0.57 Total: 46.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.65 -9.98 -44.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819913984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.301 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds