Wall clock time and date at job start Tue Mar 31 2020 15:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.53001 * 109.47275 * 275.27738 * 3 2 1 5 5 C 1.52996 * 109.47349 * 59.99305 * 4 3 2 6 6 O 1.42903 * 109.46701 * 299.99540 * 4 3 2 7 7 C 1.50695 * 109.47164 * 179.97438 * 4 3 2 8 8 C 1.38239 * 120.00206 * 329.72284 * 7 4 3 9 9 C 1.38232 * 120.00339 * 179.79528 * 8 7 4 10 10 C 1.38237 * 119.99854 * 0.43246 * 9 8 7 11 11 C 1.38233 * 120.00032 * 359.82185 * 10 9 8 12 12 C 1.38234 * 120.00090 * 359.97063 * 11 10 9 13 13 S 1.65608 * 119.99916 * 180.27320 * 2 1 3 14 14 O 1.42105 * 104.27567 * 25.79731 * 13 2 1 15 15 O 1.42099 * 104.27801 * 153.65701 * 13 2 1 16 16 C 1.81397 * 104.44917 * 269.72772 * 13 2 1 17 17 C 1.53002 * 109.47293 * 179.97438 * 16 13 2 18 18 C 1.50702 * 109.47210 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00272 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99776 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99723 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99713 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47194 * 90.00551 * 22 20 18 24 24 H 1.48504 * 109.46916 * 209.99963 * 22 20 18 25 25 H 1.48499 * 109.47410 * 329.99959 * 22 20 18 26 26 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 27 27 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 28 28 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 29 29 H 1.09005 * 109.47101 * 35.27701 * 3 2 1 30 30 H 1.09001 * 109.47746 * 155.26944 * 3 2 1 31 31 H 1.09005 * 109.46482 * 60.00372 * 5 4 3 32 32 H 1.09000 * 109.46976 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.46999 * 300.00608 * 5 4 3 34 34 H 0.96703 * 113.99779 * 299.99816 * 6 4 3 35 35 H 1.07996 * 119.99544 * 359.97438 * 8 7 4 36 36 H 1.07994 * 120.00297 * 180.27533 * 9 8 7 37 37 H 1.08000 * 120.00111 * 179.83678 * 10 9 8 38 38 H 1.07996 * 120.00207 * 179.97438 * 11 10 9 39 39 H 1.07998 * 120.00054 * 180.02562 * 12 11 10 40 40 H 1.09001 * 109.47492 * 299.99928 * 16 13 2 41 41 H 1.09001 * 109.47146 * 59.99771 * 16 13 2 42 42 H 1.09001 * 109.47069 * 300.00526 * 17 16 13 43 43 H 1.09001 * 109.46935 * 59.99981 * 17 16 13 44 44 H 0.97001 * 119.99602 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3377 1.7767 -1.4364 5 6 0.9480 1.9901 -2.0398 6 8 3.0521 0.8141 -2.2144 7 6 3.0907 3.0820 -1.4363 8 6 2.9977 3.9336 -0.3513 9 6 3.6918 5.1290 -0.3494 10 6 4.4719 5.4770 -1.4363 11 6 4.5607 4.6279 -2.5235 12 6 3.8700 3.4305 -2.5236 13 16 2.2930 -1.4342 -0.0068 14 8 1.3943 -2.3547 -0.6106 15 8 3.5369 -1.1178 -0.6164 16 6 2.5265 -1.8304 1.7479 17 6 3.2885 -3.1510 1.8756 18 6 3.4831 -3.4798 3.3333 19 1 3.1011 -2.8138 4.0928 20 6 4.1479 -4.6315 3.6975 21 7 4.6127 -5.4428 2.7726 22 14 4.3885 -5.0394 5.5044 23 1 3.2392 -5.8467 5.9869 24 1 5.6437 -5.8146 5.6740 25 1 4.4738 -3.7814 6.2888 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3634 0.8924 -0.5096 28 1 -0.3634 -0.8874 -0.5181 29 1 1.6526 2.0028 0.5935 30 1 3.1875 1.1166 0.4299 31 1 0.4032 2.7243 -1.4462 32 1 1.0479 2.3516 -3.0632 33 1 0.4030 1.0462 -2.0397 34 1 3.9436 0.6289 -1.8889 35 1 2.3850 3.6635 0.4960 36 1 3.6227 5.7922 0.5001 37 1 5.0121 6.4122 -1.4359 38 1 5.1698 4.9000 -3.3728 39 1 3.9398 2.7669 -3.3728 40 1 3.0958 -1.0342 2.2275 41 1 1.5543 -1.9241 2.2317 42 1 2.7189 -3.9470 1.3960 43 1 4.2608 -3.0577 1.3916 44 1 5.0807 -6.2528 3.0288 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819913984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:05 Heat of formation + Delta-G solvation = -119.961437 kcal Electronic energy + Delta-G solvation = -26576.383685 eV Core-core repulsion = 22812.958241 eV Total energy + Delta-G solvation = -3763.425444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93051 -38.64140 -38.10238 -36.88989 -36.23404 -35.89605 -33.22723 -33.12416 -31.72654 -30.16966 -29.05594 -27.60011 -25.64355 -24.10372 -23.50444 -23.09128 -21.23117 -19.76774 -19.16724 -18.63741 -18.17464 -17.62457 -17.13432 -16.83937 -16.54620 -16.17952 -16.02398 -15.56202 -15.31919 -15.08619 -14.85068 -14.50845 -14.24906 -14.14735 -13.97038 -13.71674 -13.49728 -13.31993 -13.22598 -13.08736 -12.93467 -12.91962 -12.77614 -12.61549 -12.48906 -12.26047 -12.14149 -12.09286 -11.96696 -11.77395 -11.63909 -11.24354 -11.05374 -10.65768 -9.84898 -9.78365 -9.56623 -8.26794 -6.41379 -0.67005 0.43925 0.53693 1.40267 1.42347 1.53492 1.80461 2.37573 2.89141 2.95674 3.06360 3.20663 3.32269 3.65987 3.75473 3.86324 4.01889 4.09801 4.16710 4.20237 4.25863 4.33752 4.54945 4.60407 4.69997 4.72586 4.73190 4.77767 4.91592 4.92898 4.99873 5.07994 5.12036 5.20423 5.25550 5.26287 5.31218 5.58263 5.65768 5.66345 5.67255 5.72175 6.05292 6.14331 6.72378 6.84950 7.28994 8.85488 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.003175 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.455552 B = 8815.924560 C = 9486.430106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.989 5.989 3 C 0.094 3.906 4 C 0.148 3.852 5 C -0.139 4.139 6 O -0.567 6.567 7 C -0.121 4.121 8 C -0.120 4.120 9 C -0.125 4.125 10 C -0.127 4.127 11 C -0.130 4.130 12 C -0.120 4.120 13 S 2.618 3.382 14 O -1.000 7.000 15 O -0.978 6.978 16 C -0.594 4.594 17 C 0.022 3.978 18 C -0.540 4.540 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.975 3.025 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.256 1.256 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.386 0.614 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.117 0.883 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.002 0.998 43 H 0.007 0.993 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 24.833 -5.201 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.827 5.827 3 C -0.032 4.032 4 C 0.105 3.895 5 C -0.196 4.196 6 O -0.376 6.376 7 C -0.122 4.122 8 C -0.138 4.138 9 C -0.142 4.142 10 C -0.145 4.145 11 C -0.148 4.148 12 C -0.138 4.138 13 S 2.714 3.286 14 O -0.990 6.990 15 O -0.969 6.969 16 C -0.725 4.725 17 C -0.017 4.017 18 C -0.579 4.579 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.574 5.574 22 Si 0.798 3.202 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.180 1.180 26 H 0.096 0.904 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.145 0.855 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.236 0.764 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.020 0.980 43 H 0.025 0.975 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.955 24.225 -6.365 25.995 hybrid contribution 0.929 -0.751 1.283 1.754 sum -6.025 23.474 -5.082 24.762 Atomic orbital electron populations 1.22056 0.77193 1.04995 1.03736 1.57093 1.15788 1.19890 1.89913 1.22297 0.97893 0.85969 0.97022 1.20580 0.92619 0.84787 0.91478 1.21963 0.93281 1.02932 1.01411 1.86481 1.33145 1.61766 1.56181 1.20507 0.99178 0.96888 0.95632 1.21376 1.00178 0.94349 0.97926 1.21487 0.96714 0.96911 0.99118 1.21512 0.99023 1.00256 0.93672 1.21398 0.99612 0.94256 0.99533 1.21117 0.97167 0.97188 0.98373 1.04633 0.73131 0.73076 0.77749 1.93468 1.65589 1.64363 1.75569 1.93399 1.45692 1.83097 1.74664 1.30451 1.10513 1.07735 1.23788 1.18797 0.94125 0.89874 0.98909 1.21527 1.36891 1.07435 0.92076 0.90617 1.26145 0.94901 0.96015 1.03248 1.70107 1.38413 1.13343 1.35539 0.85301 0.77758 0.78826 0.78310 1.19576 1.20790 1.18010 0.90366 0.87488 0.91578 0.85521 0.89806 0.88474 0.92666 0.91297 0.76358 0.83629 0.83665 0.84097 0.84803 0.86478 0.84191 0.84447 0.97966 0.97516 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.24 9.54 127.77 1.22 2.46 16 2 N -0.99 -24.48 2.83 -539.15 -1.53 -26.00 16 3 C 0.09 1.88 3.98 86.38 0.34 2.22 16 4 C 0.15 3.25 0.99 -11.54 -0.01 3.23 16 5 C -0.14 -2.61 7.48 71.98 0.54 -2.07 16 6 O -0.57 -16.79 10.43 -128.87 -1.34 -18.13 16 7 C -0.12 -2.39 4.80 -19.87 -0.10 -2.49 16 8 C -0.12 -1.87 9.14 22.27 0.20 -1.66 16 9 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 10 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 11 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 12 C -0.12 -2.50 9.35 22.27 0.21 -2.29 16 13 S 2.62 94.91 5.32 -56.49 -0.30 94.61 16 14 O -1.00 -43.38 16.57 -127.65 -2.11 -45.49 16 15 O -0.98 -39.16 14.05 -119.53 -1.68 -40.83 16 16 C -0.59 -22.65 6.12 71.98 0.44 -22.21 16 17 C 0.02 1.16 4.98 29.85 0.15 1.30 16 18 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 19 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 20 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 21 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 22 Si 0.97 43.27 29.54 68.60 2.03 45.29 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.11 1.43 5.42 -2.39 -0.01 1.42 16 28 H 0.07 1.55 6.91 -2.39 -0.02 1.54 16 29 H 0.13 1.52 6.48 -2.38 -0.02 1.50 16 30 H 0.08 1.77 7.61 -2.39 -0.02 1.75 16 31 H 0.10 1.22 8.04 -2.38 -0.02 1.20 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.41 5.61 -2.39 -0.01 1.39 16 34 H 0.39 11.64 7.52 -74.06 -0.56 11.08 16 35 H 0.15 1.53 6.17 -2.91 -0.02 1.51 16 36 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16 39 H 0.12 2.60 7.48 -2.91 -0.02 2.58 16 40 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 41 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 42 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -77.90 364.75 0.16 -77.74 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.45 Total: 26.24 kcal Atomic # 6 Polarization: -60.76 SS G_CDS: 4.36 Total: -56.40 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -1.24 Total: -83.03 kcal Atomic # 8 Polarization: -99.32 SS G_CDS: -5.14 Total: -104.46 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 94.91 SS G_CDS: -0.30 Total: 94.61 kcal Total: -77.90 0.16 -77.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819913984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.222 kcal (2) G-P(sol) polarization free energy of solvation -77.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds