Wall clock time and date at job start Tue Mar 31 2020 15:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99810 * 2 1 4 4 C 1.52997 * 109.47127 * 84.99630 * 3 2 1 5 5 C 1.53001 * 109.47353 * 304.99645 * 4 3 2 6 6 O 1.42894 * 109.47499 * 65.00086 * 4 3 2 7 7 C 1.50706 * 109.46831 * 185.00335 * 4 3 2 8 8 C 1.38237 * 119.99744 * 210.00383 * 7 4 3 9 9 C 1.38235 * 119.99712 * 180.02562 * 8 7 4 10 10 C 1.38234 * 120.00220 * 359.94731 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00223 * 30.01594 * 7 4 3 13 13 S 1.65598 * 120.00175 * 179.97438 * 2 1 3 14 14 O 1.42098 * 104.27835 * 26.07381 * 13 2 1 15 15 O 1.42101 * 104.27722 * 153.93454 * 13 2 1 16 16 C 1.81400 * 104.45135 * 270.00268 * 13 2 1 17 17 C 1.53001 * 109.47384 * 180.02562 * 16 13 2 18 18 C 1.50704 * 109.47107 * 180.02562 * 17 16 13 19 19 H 1.07994 * 119.99854 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99925 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99694 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47290 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46801 * 120.00158 * 22 20 18 25 25 H 1.48499 * 109.47244 * 239.99928 * 22 20 18 26 26 H 1.09000 * 109.46733 * 90.00968 * 1 2 3 27 27 H 1.09002 * 109.46762 * 209.99984 * 1 2 3 28 28 H 1.08998 * 109.47483 * 330.00114 * 1 2 3 29 29 H 1.09007 * 109.46653 * 324.99724 * 3 2 1 30 30 H 1.08997 * 109.46689 * 204.99691 * 3 2 1 31 31 H 1.08993 * 109.47154 * 300.00362 * 5 4 3 32 32 H 1.09001 * 109.46664 * 60.00290 * 5 4 3 33 33 H 1.08998 * 109.47218 * 179.97438 * 5 4 3 34 34 H 0.96705 * 113.99982 * 59.99764 * 6 4 3 35 35 H 1.08005 * 120.00088 * 359.97438 * 8 7 4 36 36 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 37 37 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 39 39 H 1.07998 * 119.99975 * 0.02562 * 12 7 4 40 40 H 1.09006 * 109.47232 * 300.00035 * 16 13 2 41 41 H 1.09008 * 109.47463 * 59.99783 * 16 13 2 42 42 H 1.09001 * 109.47223 * 299.99816 * 17 16 13 43 43 H 1.08999 * 109.47104 * 60.00051 * 17 16 13 44 44 H 0.97008 * 119.99583 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7733 1.4370 5 6 0.9619 1.8666 2.0877 6 8 3.1597 0.8658 2.1800 7 6 2.9874 3.1359 1.4279 8 6 3.7715 3.5369 2.4934 9 6 4.3617 4.7869 2.4853 10 6 4.1687 5.6355 1.4113 11 6 3.3807 5.2364 0.3480 12 6 2.7938 3.9848 0.3542 13 16 2.2931 -1.4341 0.0006 14 8 1.3971 -2.3564 -0.6042 15 8 3.5396 -1.1193 -0.6046 16 6 2.5194 -1.8254 1.7574 17 6 3.2820 -3.1449 1.8920 18 6 3.4694 -3.4703 3.3515 19 1 3.0836 -2.8025 4.1074 20 6 4.1335 -4.6205 3.7216 21 7 4.6029 -5.4339 2.8009 22 14 4.3664 -5.0234 5.5307 23 1 3.7498 -3.9562 6.3589 24 1 3.7170 -6.3236 5.8358 25 1 5.8172 -5.1112 5.8355 26 1 -0.3633 -0.0002 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6500 2.0043 -0.5895 30 1 3.1858 1.1177 -0.4343 31 1 0.3394 2.5589 1.5210 32 1 0.4962 0.8812 2.0942 33 1 1.0660 2.2257 3.1116 34 1 4.0521 0.7572 1.8236 35 1 3.9224 2.8739 3.3326 36 1 4.9740 5.1004 3.3179 37 1 4.6302 6.6119 1.4048 38 1 3.2263 5.9010 -0.4892 39 1 2.1807 3.6717 -0.4779 40 1 3.0866 -1.0278 2.2372 41 1 1.5451 -1.9178 2.2376 42 1 2.7152 -3.9428 1.4122 43 1 4.2562 -3.0521 1.4120 44 1 5.0705 -6.2430 3.0614 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819913985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:09 Heat of formation + Delta-G solvation = -91.003607 kcal Electronic energy + Delta-G solvation = -26986.083535 eV Core-core repulsion = 23223.913797 eV Total energy + Delta-G solvation = -3762.169738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.22791 -37.88448 -36.58891 -35.54238 -35.23283 -33.77445 -32.48372 -31.09456 -31.00538 -29.41048 -28.21403 -25.54084 -24.67487 -23.35798 -22.47915 -21.41342 -20.48658 -18.54387 -17.81834 -17.40952 -16.71369 -16.40973 -15.89997 -15.79491 -15.31665 -14.90609 -14.70151 -14.52661 -14.32597 -14.13841 -13.60521 -13.48170 -13.10541 -13.06464 -12.73196 -12.52124 -12.44744 -12.09619 -11.97595 -11.82088 -11.61086 -11.55389 -11.45013 -11.24335 -11.11690 -11.01526 -10.91920 -10.86563 -10.58433 -10.30619 -9.99196 -9.66434 -9.21410 -9.11640 -8.97163 -8.63280 -8.44230 -6.06477 -4.10750 0.85605 1.10852 1.20794 3.03620 3.28898 3.36186 3.40287 3.56480 3.99547 4.33492 4.38073 4.44564 4.60745 4.64786 4.73377 4.80182 4.84719 4.94065 5.02904 5.25237 5.28940 5.34028 5.40823 5.46119 5.62050 5.65056 5.68198 5.76030 5.80844 5.83665 5.85526 5.92949 6.07943 6.13651 6.25664 6.32181 6.38729 6.64662 6.76973 6.79161 7.40413 7.45032 7.55406 7.88428 8.26277 8.93616 9.53505 11.04709 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.004020 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.752309 B = 6962.914639 C = 8316.319073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.002 6.002 3 C 0.092 3.908 4 C 0.149 3.851 5 C -0.137 4.137 6 O -0.545 6.545 7 C -0.111 4.111 8 C -0.099 4.099 9 C -0.121 4.121 10 C -0.121 4.121 11 C -0.122 4.122 12 C -0.115 4.115 13 S 2.585 3.415 14 O -0.969 6.969 15 O -0.971 6.971 16 C -0.590 4.590 17 C 0.028 3.972 18 C -0.512 4.512 19 H 0.063 0.937 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.384 0.616 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.148 0.852 41 H 0.114 0.886 42 H 0.028 0.972 43 H 0.031 0.969 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 22.508 -3.665 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.837 5.837 3 C -0.034 4.034 4 C 0.107 3.893 5 C -0.194 4.194 6 O -0.353 6.353 7 C -0.112 4.112 8 C -0.117 4.117 9 C -0.139 4.139 10 C -0.139 4.139 11 C -0.140 4.140 12 C -0.133 4.133 13 S 2.685 3.315 14 O -0.960 6.960 15 O -0.961 6.961 16 C -0.724 4.724 17 C -0.011 4.011 18 C -0.552 4.552 19 H 0.081 0.919 20 C -0.146 4.146 21 N -0.531 5.531 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.233 0.767 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.166 0.834 41 H 0.132 0.868 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.167 21.854 -4.184 23.090 hybrid contribution 0.566 0.037 1.246 1.369 sum -5.601 21.892 -2.938 22.787 Atomic orbital electron populations 1.21628 0.78998 1.03194 1.02007 1.57537 1.14689 1.21055 1.90391 1.22105 0.98912 0.86416 0.95990 1.20563 0.91733 0.85038 0.91976 1.21897 0.93289 1.03157 1.01043 1.86607 1.28480 1.63729 1.56442 1.20464 0.98926 0.96653 0.95114 1.21105 0.96174 0.96172 0.98280 1.21192 0.99903 0.94269 0.98534 1.21185 0.98809 0.99689 0.94258 1.21127 0.97924 0.96328 0.98612 1.21132 1.00184 0.94076 0.97917 1.05886 0.73483 0.72429 0.79744 1.93526 1.64897 1.61839 1.75711 1.93497 1.43925 1.82883 1.75795 1.30682 1.10654 1.11242 1.19794 1.18955 0.94826 0.87442 0.99843 1.21054 1.36471 1.06736 0.90905 0.91907 1.25071 0.95491 0.96190 0.97850 1.69977 1.37658 1.12720 1.32766 0.86440 0.77888 0.78315 0.84803 1.19633 1.20916 1.20885 0.92800 0.90910 0.90675 0.89335 0.88184 0.91272 0.90334 0.91718 0.76677 0.84992 0.86030 0.86269 0.86102 0.85712 0.83401 0.86754 0.95360 0.95122 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 8.95 59.85 0.54 1.49 16 2 N -1.00 -13.43 2.79 -121.75 -0.34 -13.77 16 3 C 0.09 1.03 4.41 -4.04 -0.02 1.02 16 4 C 0.15 1.60 1.01 -91.77 -0.09 1.50 16 5 C -0.14 -1.34 7.36 37.16 0.27 -1.06 16 6 O -0.54 -6.88 8.36 -35.23 -0.29 -7.18 16 7 C -0.11 -1.10 4.81 -104.62 -0.50 -1.61 16 8 C -0.10 -1.00 9.35 -39.58 -0.37 -1.37 16 9 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 10 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 11 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 12 C -0.12 -1.02 9.14 -39.58 -0.36 -1.38 16 13 S 2.59 47.88 5.25 -107.50 -0.56 47.32 16 14 O -0.97 -20.88 17.09 -57.54 -0.98 -21.86 16 15 O -0.97 -19.97 16.53 -57.54 -0.95 -20.92 16 16 C -0.59 -11.65 5.77 37.16 0.21 -11.44 16 17 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 18 C -0.51 -14.30 9.11 -34.44 -0.31 -14.62 16 19 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 22 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 28 H 0.07 0.60 5.42 -51.93 -0.28 0.32 16 29 H 0.09 0.76 6.18 -51.93 -0.32 0.44 16 30 H 0.10 1.23 6.82 -51.93 -0.35 0.87 16 31 H 0.07 0.54 7.77 -51.93 -0.40 0.13 16 32 H 0.08 0.80 5.79 -51.93 -0.30 0.50 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.38 4.33 8.94 45.56 0.41 4.74 16 35 H 0.13 1.34 7.49 -52.48 -0.39 0.95 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.90 6.05 -52.49 -0.32 0.59 16 40 H 0.15 2.69 4.71 -51.92 -0.24 2.45 16 41 H 0.11 2.10 8.14 -51.92 -0.42 1.68 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -35.54 362.51 -9.55 -45.10 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.54 Total: 5.17 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: -2.06 Total: -29.68 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.40 Total: -39.86 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -2.23 Total: -49.96 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 47.88 SS G_CDS: -0.56 Total: 47.32 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.54 -9.55 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819913985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.906 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds