Wall clock time and date at job start Tue Mar 31 2020 15:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99810 * 2 1 4 4 C 1.52997 * 109.47127 * 84.99630 * 3 2 1 5 5 C 1.53001 * 109.47353 * 304.99645 * 4 3 2 6 6 O 1.42894 * 109.47499 * 65.00086 * 4 3 2 7 7 C 1.50706 * 109.46831 * 185.00335 * 4 3 2 8 8 C 1.38237 * 119.99744 * 210.00383 * 7 4 3 9 9 C 1.38235 * 119.99712 * 180.02562 * 8 7 4 10 10 C 1.38234 * 120.00220 * 359.94731 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00223 * 30.01594 * 7 4 3 13 13 S 1.65598 * 120.00175 * 179.97438 * 2 1 3 14 14 O 1.42098 * 104.27835 * 26.07381 * 13 2 1 15 15 O 1.42101 * 104.27722 * 153.93454 * 13 2 1 16 16 C 1.81400 * 104.45135 * 270.00268 * 13 2 1 17 17 C 1.53001 * 109.47384 * 180.02562 * 16 13 2 18 18 C 1.50704 * 109.47107 * 180.02562 * 17 16 13 19 19 H 1.07994 * 119.99854 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99925 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99694 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47290 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46801 * 120.00158 * 22 20 18 25 25 H 1.48499 * 109.47244 * 239.99928 * 22 20 18 26 26 H 1.09000 * 109.46733 * 90.00968 * 1 2 3 27 27 H 1.09002 * 109.46762 * 209.99984 * 1 2 3 28 28 H 1.08998 * 109.47483 * 330.00114 * 1 2 3 29 29 H 1.09007 * 109.46653 * 324.99724 * 3 2 1 30 30 H 1.08997 * 109.46689 * 204.99691 * 3 2 1 31 31 H 1.08993 * 109.47154 * 300.00362 * 5 4 3 32 32 H 1.09001 * 109.46664 * 60.00290 * 5 4 3 33 33 H 1.08998 * 109.47218 * 179.97438 * 5 4 3 34 34 H 0.96705 * 113.99982 * 59.99764 * 6 4 3 35 35 H 1.08005 * 120.00088 * 359.97438 * 8 7 4 36 36 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 37 37 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 39 39 H 1.07998 * 119.99975 * 0.02562 * 12 7 4 40 40 H 1.09006 * 109.47232 * 300.00035 * 16 13 2 41 41 H 1.09008 * 109.47463 * 59.99783 * 16 13 2 42 42 H 1.09001 * 109.47223 * 299.99816 * 17 16 13 43 43 H 1.08999 * 109.47104 * 60.00051 * 17 16 13 44 44 H 0.97008 * 119.99583 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7733 1.4370 5 6 0.9619 1.8666 2.0877 6 8 3.1597 0.8658 2.1800 7 6 2.9874 3.1359 1.4279 8 6 3.7715 3.5369 2.4934 9 6 4.3617 4.7869 2.4853 10 6 4.1687 5.6355 1.4113 11 6 3.3807 5.2364 0.3480 12 6 2.7938 3.9848 0.3542 13 16 2.2931 -1.4341 0.0006 14 8 1.3971 -2.3564 -0.6042 15 8 3.5396 -1.1193 -0.6046 16 6 2.5194 -1.8254 1.7574 17 6 3.2820 -3.1449 1.8920 18 6 3.4694 -3.4703 3.3515 19 1 3.0836 -2.8025 4.1074 20 6 4.1335 -4.6205 3.7216 21 7 4.6029 -5.4339 2.8009 22 14 4.3664 -5.0234 5.5307 23 1 3.7498 -3.9562 6.3589 24 1 3.7170 -6.3236 5.8358 25 1 5.8172 -5.1112 5.8355 26 1 -0.3633 -0.0002 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6500 2.0043 -0.5895 30 1 3.1858 1.1177 -0.4343 31 1 0.3394 2.5589 1.5210 32 1 0.4962 0.8812 2.0942 33 1 1.0660 2.2257 3.1116 34 1 4.0521 0.7572 1.8236 35 1 3.9224 2.8739 3.3326 36 1 4.9740 5.1004 3.3179 37 1 4.6302 6.6119 1.4048 38 1 3.2263 5.9010 -0.4892 39 1 2.1807 3.6717 -0.4779 40 1 3.0866 -1.0278 2.2372 41 1 1.5451 -1.9178 2.2376 42 1 2.7152 -3.9428 1.4122 43 1 4.2562 -3.0521 1.4120 44 1 5.0705 -6.2430 3.0614 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819913985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:09 Heat of formation + Delta-G solvation = -116.662598 kcal Electronic energy + Delta-G solvation = -26987.196192 eV Core-core repulsion = 23223.913797 eV Total energy + Delta-G solvation = -3763.282395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.99187 -38.70185 -38.17215 -37.03443 -36.40165 -35.79716 -33.34949 -32.99326 -31.72612 -30.13930 -29.08349 -27.54884 -25.68590 -24.09360 -23.50431 -23.04418 -21.30232 -19.87114 -19.12226 -18.56937 -18.25033 -17.55716 -17.21785 -16.96886 -16.53317 -16.33895 -15.98584 -15.53877 -15.29071 -15.18325 -14.84173 -14.44660 -14.24458 -14.18038 -14.03480 -13.67176 -13.51004 -13.39130 -13.24754 -13.18263 -12.97321 -12.85468 -12.79899 -12.62445 -12.48544 -12.26736 -12.20107 -12.08746 -11.88415 -11.69012 -11.65826 -11.34761 -10.90135 -10.62575 -9.87365 -9.77400 -9.57390 -8.24044 -6.37074 -0.64722 0.44133 0.54750 1.40587 1.41152 1.54888 1.75130 2.39150 2.86554 2.90505 3.08647 3.09376 3.26227 3.59157 3.76427 3.83404 4.07160 4.16190 4.21304 4.22174 4.33376 4.34897 4.52710 4.61671 4.68615 4.73969 4.79289 4.85850 4.94151 4.95468 4.97550 5.07578 5.13191 5.21442 5.30932 5.34689 5.43068 5.58765 5.63485 5.67678 5.71184 5.73477 6.10940 6.14910 6.66837 6.76556 7.32553 8.88468 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.004020 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.752309 B = 6962.914639 C = 8316.319073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.989 5.989 3 C 0.087 3.913 4 C 0.151 3.849 5 C -0.140 4.140 6 O -0.564 6.564 7 C -0.118 4.118 8 C -0.117 4.117 9 C -0.131 4.131 10 C -0.126 4.126 11 C -0.125 4.125 12 C -0.121 4.121 13 S 2.608 3.392 14 O -1.001 7.001 15 O -0.994 6.994 16 C -0.590 4.590 17 C 0.024 3.976 18 C -0.530 4.530 19 H 0.072 0.928 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.972 3.028 23 H -0.258 1.258 24 H -0.278 1.278 25 H -0.277 1.277 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.385 0.615 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.164 0.836 41 H 0.128 0.872 42 H -0.001 1.001 43 H 0.005 0.995 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 25.182 -3.198 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.827 5.827 3 C -0.039 4.039 4 C 0.109 3.891 5 C -0.196 4.196 6 O -0.372 6.372 7 C -0.119 4.119 8 C -0.135 4.135 9 C -0.149 4.149 10 C -0.144 4.144 11 C -0.143 4.143 12 C -0.139 4.139 13 S 2.707 3.293 14 O -0.992 6.992 15 O -0.985 6.985 16 C -0.722 4.722 17 C -0.015 4.015 18 C -0.569 4.569 19 H 0.090 0.910 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.796 3.204 23 H -0.181 1.181 24 H -0.204 1.204 25 H -0.203 1.203 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.143 0.857 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.140 0.860 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.181 0.819 41 H 0.146 0.854 42 H 0.017 0.983 43 H 0.023 0.977 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.305 24.531 -3.702 25.862 hybrid contribution 0.897 -0.666 1.039 1.526 sum -6.408 23.865 -2.663 24.853 Atomic orbital electron populations 1.21973 0.76901 1.04754 1.03322 1.57095 1.15791 1.19939 1.89886 1.22381 0.98730 0.85741 0.97002 1.20639 0.92019 0.85129 0.91350 1.21973 0.92983 1.03528 1.01153 1.86550 1.28890 1.64542 1.57263 1.20393 0.99427 0.96398 0.95716 1.21142 0.97160 0.96757 0.98440 1.21406 1.00022 0.94062 0.99416 1.21502 0.98583 1.00426 0.93891 1.21465 0.97223 0.96441 0.99184 1.21371 1.00397 0.94173 0.97914 1.04842 0.72912 0.73134 0.78450 1.93478 1.65637 1.64082 1.75968 1.93459 1.45603 1.83532 1.75865 1.30612 1.10658 1.08414 1.22486 1.18795 0.93999 0.89915 0.98773 1.21499 1.36310 1.07080 0.92039 0.90981 1.26094 0.95049 0.96049 1.03011 1.70117 1.38639 1.13388 1.35386 0.85287 0.78049 0.78381 0.78666 1.18147 1.20368 1.20255 0.91673 0.91515 0.87059 0.85655 0.89365 0.88642 0.90799 0.92372 0.76481 0.86028 0.84932 0.84232 0.83807 0.83877 0.81858 0.85400 0.98316 0.97664 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 8.95 127.77 1.14 2.58 16 2 N -0.99 -24.90 2.79 -539.11 -1.50 -26.41 16 3 C 0.09 1.75 4.41 86.38 0.38 2.13 16 4 C 0.15 2.97 1.01 -11.54 -0.01 2.96 16 5 C -0.14 -2.38 7.36 71.98 0.53 -1.85 16 6 O -0.56 -14.09 8.36 -148.98 -1.25 -15.34 16 7 C -0.12 -2.16 4.81 -19.86 -0.10 -2.26 16 8 C -0.12 -2.28 9.35 22.27 0.21 -2.07 16 9 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 10 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 11 C -0.13 -1.70 10.05 22.27 0.22 -1.47 16 12 C -0.12 -1.80 9.14 22.27 0.20 -1.59 16 13 S 2.61 97.57 5.25 -56.49 -0.30 97.27 16 14 O -1.00 -43.80 17.09 -127.65 -2.18 -45.99 16 15 O -0.99 -41.67 16.53 -127.65 -2.11 -43.78 16 16 C -0.59 -23.76 5.77 71.98 0.42 -23.35 16 17 C 0.02 1.30 4.98 29.85 0.15 1.45 16 18 C -0.53 -30.23 9.11 25.60 0.23 -30.00 16 19 H 0.07 3.87 7.74 -2.91 -0.02 3.84 16 20 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 21 N -0.94 -57.91 13.29 21.45 0.28 -57.62 16 22 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.39 7.79 -2.39 -0.02 1.37 16 28 H 0.11 1.34 5.42 -2.39 -0.01 1.33 16 29 H 0.13 1.64 6.18 -2.38 -0.01 1.63 16 30 H 0.09 2.05 6.82 -2.39 -0.02 2.03 16 31 H 0.09 1.10 7.77 -2.39 -0.02 1.08 16 32 H 0.07 1.32 5.79 -2.39 -0.01 1.31 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.39 8.95 8.94 -74.05 -0.66 8.29 16 35 H 0.12 2.52 7.49 -2.91 -0.02 2.50 16 36 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.14 1.50 6.05 -2.91 -0.02 1.48 16 40 H 0.16 6.03 4.71 -2.39 -0.01 6.02 16 41 H 0.13 4.72 8.14 -2.39 -0.02 4.70 16 42 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -78.65 362.51 -0.39 -79.04 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.35 Total: 23.26 kcal Atomic # 6 Polarization: -61.07 SS G_CDS: 4.29 Total: -56.78 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -1.22 Total: -84.03 kcal Atomic # 8 Polarization: -99.57 SS G_CDS: -5.54 Total: -105.10 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 97.57 SS G_CDS: -0.30 Total: 97.27 kcal Total: -78.65 -0.39 -79.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819913985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.626 kcal (2) G-P(sol) polarization free energy of solvation -78.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds