Wall clock time and date at job start Tue Mar 31 2020 14:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35900 * 117.00298 * 2 1 4 4 C 1.38754 * 120.04982 * 0.20380 * 3 2 1 5 5 C 1.38131 * 119.94146 * 180.23063 * 4 3 2 6 6 C 1.38283 * 120.05500 * 359.81966 * 5 4 3 7 7 C 1.50703 * 119.94742 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46812 * 239.97712 * 7 6 5 9 9 C 1.53006 * 109.46903 * 359.97022 * 7 6 5 10 10 C 1.52999 * 109.47566 * 119.97227 * 7 6 5 11 11 C 1.38246 * 120.11181 * 359.96831 * 6 5 4 12 12 C 1.38158 * 120.05700 * 359.97438 * 11 6 5 13 13 S 1.76204 * 120.03189 * 179.97438 * 12 11 6 14 14 O 1.42105 * 106.39972 * 1.45800 * 13 12 11 15 15 O 1.42098 * 106.40426 * 228.53973 * 13 12 11 16 16 N 1.65595 * 107.21987 * 114.99685 * 13 12 11 17 17 C 1.46508 * 119.99876 * 65.00402 * 16 13 12 18 18 C 1.50701 * 109.47193 * 165.00215 * 17 16 13 19 19 H 1.07998 * 119.99882 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99798 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99682 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00295 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47175 * 89.99594 * 22 20 18 24 24 H 1.48493 * 109.47571 * 209.99980 * 22 20 18 25 25 H 1.48507 * 109.47248 * 330.00085 * 22 20 18 26 26 H 1.08993 * 109.47667 * 300.00404 * 1 2 3 27 27 H 1.09001 * 109.47046 * 60.00477 * 1 2 3 28 28 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.03663 * 0.02666 * 4 3 2 30 30 H 1.07997 * 119.97018 * 179.79129 * 5 4 3 31 31 H 1.09000 * 109.47425 * 59.99706 * 8 7 6 32 32 H 1.09003 * 109.47146 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47374 * 299.99018 * 8 7 6 34 34 H 1.09006 * 109.46595 * 60.00207 * 9 7 6 35 35 H 1.08996 * 109.47317 * 180.02562 * 9 7 6 36 36 H 1.08995 * 109.47077 * 300.00673 * 9 7 6 37 37 H 1.08996 * 109.46929 * 60.00215 * 10 7 6 38 38 H 1.08996 * 109.46990 * 180.02562 * 10 7 6 39 39 H 1.09002 * 109.46954 * 300.00080 * 10 7 6 40 40 H 1.08000 * 119.97272 * 179.97438 * 11 6 5 41 41 H 0.96997 * 120.00034 * 245.00430 * 16 13 12 42 42 H 1.09006 * 109.46715 * 285.00199 * 17 16 13 43 43 H 1.08993 * 109.46869 * 44.99478 * 17 16 13 44 44 H 0.97003 * 119.99390 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2913 2.3752 0.0043 5 6 1.9208 3.6048 -0.0006 6 6 3.3018 3.6758 -0.0059 7 6 3.9860 5.0185 -0.0105 8 6 4.8559 5.1432 -1.2630 9 6 2.9323 6.1279 -0.0091 10 6 4.8644 5.1478 1.2355 11 6 4.0559 2.5171 -0.0057 12 6 3.4311 1.2849 0.0003 13 16 4.3929 -0.1915 -0.0002 14 8 5.7539 0.2162 0.0273 15 8 3.8511 -1.0231 -1.0171 16 7 4.1069 -0.9634 1.4367 17 6 2.7698 -1.4821 1.7361 18 6 2.8507 -2.4393 2.8973 19 1 3.8029 -2.6414 3.3651 20 6 1.7091 -3.0570 3.3623 21 7 1.7799 -3.8927 4.3753 22 14 0.0622 -2.7069 2.5535 23 1 -0.1629 -3.6744 1.4496 24 1 -1.0220 -2.8424 3.5592 25 1 0.0620 -1.3254 2.0086 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2127 2.3204 0.0080 30 1 1.3339 4.5113 -0.0006 31 1 4.2301 5.0511 -2.1507 32 1 5.3505 6.1145 -1.2667 33 1 5.6067 4.3530 -1.2641 34 1 2.3125 6.0390 0.8832 35 1 3.4271 7.0990 -0.0129 36 1 2.3065 6.0357 -0.8967 37 1 5.6151 4.3575 1.2344 38 1 5.3589 6.1191 1.2323 39 1 4.2446 5.0589 2.1277 40 1 5.1343 2.5752 -0.0103 41 1 4.8245 -1.0721 2.0801 42 1 2.1082 -0.6547 1.9927 43 1 2.3781 -2.0029 0.8624 44 1 0.9767 -4.3275 4.7022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827529100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:44 Heat of formation + Delta-G solvation = -93.501776 kcal Electronic energy + Delta-G solvation = -27317.313018 eV Core-core repulsion = 23555.034951 eV Total energy + Delta-G solvation = -3762.278067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.48829 -38.70903 -36.61494 -35.67473 -35.28174 -34.62543 -32.15056 -31.59237 -29.56145 -27.80871 -27.40433 -27.31745 -27.08918 -23.18629 -22.61426 -21.94329 -19.93642 -18.74944 -18.43862 -17.52375 -16.52046 -16.23797 -16.00050 -15.93725 -15.54788 -15.21896 -14.61533 -14.45523 -14.35922 -14.14812 -13.48027 -13.43867 -13.12564 -12.96395 -12.76110 -12.43738 -12.38368 -12.30707 -12.16998 -11.87991 -11.81807 -11.70494 -11.54034 -11.42520 -11.34261 -11.15016 -10.93605 -10.85072 -10.80026 -10.47583 -10.25104 -9.86444 -9.42516 -9.38083 -8.83060 -8.42545 -8.20173 -6.15281 -4.15358 0.81134 1.08578 1.32317 3.18575 3.23171 3.25404 3.29269 3.37990 3.76998 4.18729 4.33491 4.38609 4.51975 4.75242 4.77966 4.79335 5.00061 5.07752 5.17723 5.18694 5.24490 5.32339 5.37764 5.44231 5.52545 5.55948 5.61846 5.65263 5.70246 5.70868 5.73958 5.86815 6.02552 6.07217 6.13300 6.15603 6.36553 6.42237 6.63951 7.01108 7.09720 7.23142 7.47992 7.94219 8.42472 8.87113 9.43135 10.97128 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.004600 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.686657 B = 6086.021627 C = 6733.072256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.294 6.294 3 C 0.225 3.775 4 C -0.228 4.228 5 C -0.032 4.032 6 C -0.136 4.136 7 C -0.023 4.023 8 C -0.143 4.143 9 C -0.144 4.144 10 C -0.143 4.143 11 C 0.018 3.982 12 C -0.701 4.701 13 S 2.696 3.304 14 O -0.981 6.981 15 O -0.954 6.954 16 N -1.095 6.095 17 C 0.226 3.774 18 C -0.529 4.529 19 H 0.080 0.920 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.867 3.133 23 H -0.272 1.272 24 H -0.288 1.288 25 H -0.250 1.250 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.145 0.855 41 H 0.414 0.586 42 H 0.021 0.979 43 H 0.036 0.964 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.259 19.656 -9.251 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.205 6.205 3 C 0.176 3.824 4 C -0.247 4.247 5 C -0.050 4.050 6 C -0.137 4.137 7 C -0.023 4.023 8 C -0.200 4.200 9 C -0.201 4.201 10 C -0.200 4.200 11 C -0.001 4.001 12 C -0.787 4.787 13 S 2.783 3.217 14 O -0.971 6.971 15 O -0.944 6.944 16 N -0.857 5.857 17 C 0.102 3.898 18 C -0.568 4.568 19 H 0.098 0.902 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.694 3.306 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.175 1.175 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.163 0.837 41 H 0.249 0.751 42 H 0.038 0.962 43 H 0.054 0.946 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.936 19.083 -9.940 21.537 hybrid contribution -1.519 0.598 0.387 1.678 sum -2.455 19.681 -9.553 22.014 Atomic orbital electron populations 1.23308 0.77584 1.04829 1.01156 1.86366 1.22369 1.25467 1.86336 1.18412 0.90646 0.85229 0.88089 1.21304 1.00292 0.92243 1.10856 1.21177 0.94134 0.97134 0.92553 1.19754 0.93460 0.94586 1.05911 1.19416 0.95303 0.91265 0.96363 1.21947 0.99455 1.02004 0.96597 1.21971 0.98540 0.97765 1.01848 1.21947 0.99438 1.01978 0.96675 1.20595 1.00269 0.89514 0.89760 1.30368 1.04375 1.20305 1.23620 1.01684 0.72676 0.73401 0.73894 1.93514 1.32715 1.83663 1.87190 1.93569 1.80027 1.64708 1.56097 1.55214 1.21069 1.71690 1.37721 1.19475 0.78238 0.94504 0.97596 1.21164 0.96596 1.24773 1.14260 0.90160 1.24857 0.99035 0.94498 0.94700 1.69891 1.29303 1.28737 1.25490 0.87047 0.83738 0.80235 0.79627 1.19763 1.21403 1.17469 0.91913 0.92439 0.87673 0.84771 0.84960 0.92474 0.92256 0.92058 0.92256 0.92244 0.92363 0.91992 0.92289 0.92321 0.83718 0.75135 0.96172 0.94579 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 8.18 101.05 0.83 1.18 16 2 O -0.29 -5.26 5.59 -29.50 -0.17 -5.43 16 3 C 0.22 3.73 6.31 -39.22 -0.25 3.48 16 4 C -0.23 -3.01 9.04 -39.43 -0.36 -3.37 16 5 C -0.03 -0.37 8.97 -39.60 -0.36 -0.72 16 6 C -0.14 -1.66 4.76 -104.60 -0.50 -2.16 16 7 C -0.02 -0.22 0.85 -155.66 -0.13 -0.35 16 8 C -0.14 -1.26 8.29 37.16 0.31 -0.95 16 9 C -0.14 -1.09 7.13 37.16 0.27 -0.83 16 10 C -0.14 -1.32 8.29 37.16 0.31 -1.01 16 11 C 0.02 0.26 8.21 -39.61 -0.33 -0.07 16 12 C -0.70 -11.97 5.90 -39.44 -0.23 -12.21 16 13 S 2.70 52.53 5.46 -107.50 -0.59 51.94 16 14 O -0.98 -19.35 16.97 -57.17 -0.97 -20.32 16 15 O -0.95 -21.22 16.75 -62.59 -1.05 -22.27 16 16 N -1.09 -22.81 5.99 -11.65 -0.07 -22.88 16 17 C 0.23 5.35 3.33 -5.19 -0.02 5.33 16 18 C -0.53 -14.56 9.83 -34.44 -0.34 -14.90 16 19 H 0.08 2.35 7.90 -52.49 -0.41 1.94 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 21 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 22 Si 0.87 19.80 26.85 -169.99 -4.56 15.23 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.25 -4.98 4.04 56.52 0.23 -4.75 16 26 H 0.06 0.78 7.43 -51.93 -0.39 0.39 16 27 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 28 H 0.10 1.44 7.09 -51.93 -0.37 1.07 16 29 H 0.13 1.42 6.30 -52.49 -0.33 1.09 16 30 H 0.13 1.14 5.89 -52.49 -0.31 0.83 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.57 7.38 -51.93 -0.38 0.19 16 34 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.41 7.51 -51.93 -0.39 0.02 16 37 H 0.06 0.61 7.38 -51.93 -0.38 0.22 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.15 1.96 6.37 -52.49 -0.33 1.62 16 41 H 0.41 8.03 8.54 -34.47 -0.29 7.74 16 42 H 0.02 0.47 5.73 -51.93 -0.30 0.17 16 43 H 0.04 0.88 6.57 -51.93 -0.34 0.54 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -33.71 352.66 -8.65 -42.36 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.44 Total: 6.62 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: -0.89 Total: -24.66 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.70 Total: -48.79 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -2.18 Total: -48.02 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.56 Total: 15.23 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.59 Total: 51.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.71 -8.65 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827529100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.142 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds