Wall clock time and date at job start Tue Mar 31 2020 14:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35900 * 117.00298 * 2 1 4 4 C 1.38754 * 120.04982 * 0.20380 * 3 2 1 5 5 C 1.38131 * 119.94146 * 180.23063 * 4 3 2 6 6 C 1.38283 * 120.05500 * 359.81966 * 5 4 3 7 7 C 1.50703 * 119.94742 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46812 * 239.97712 * 7 6 5 9 9 C 1.53006 * 109.46903 * 359.97022 * 7 6 5 10 10 C 1.52999 * 109.47566 * 119.97227 * 7 6 5 11 11 C 1.38246 * 120.11181 * 359.96831 * 6 5 4 12 12 C 1.38158 * 120.05700 * 359.97438 * 11 6 5 13 13 S 1.76204 * 120.03189 * 179.97438 * 12 11 6 14 14 O 1.42105 * 106.39972 * 1.45800 * 13 12 11 15 15 O 1.42098 * 106.40426 * 228.53973 * 13 12 11 16 16 N 1.65595 * 107.21987 * 114.99685 * 13 12 11 17 17 C 1.46508 * 119.99876 * 65.00402 * 16 13 12 18 18 C 1.50701 * 109.47193 * 165.00215 * 17 16 13 19 19 H 1.07998 * 119.99882 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99798 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99682 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00295 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47175 * 89.99594 * 22 20 18 24 24 H 1.48493 * 109.47571 * 209.99980 * 22 20 18 25 25 H 1.48507 * 109.47248 * 330.00085 * 22 20 18 26 26 H 1.08993 * 109.47667 * 300.00404 * 1 2 3 27 27 H 1.09001 * 109.47046 * 60.00477 * 1 2 3 28 28 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.03663 * 0.02666 * 4 3 2 30 30 H 1.07997 * 119.97018 * 179.79129 * 5 4 3 31 31 H 1.09000 * 109.47425 * 59.99706 * 8 7 6 32 32 H 1.09003 * 109.47146 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47374 * 299.99018 * 8 7 6 34 34 H 1.09006 * 109.46595 * 60.00207 * 9 7 6 35 35 H 1.08996 * 109.47317 * 180.02562 * 9 7 6 36 36 H 1.08995 * 109.47077 * 300.00673 * 9 7 6 37 37 H 1.08996 * 109.46929 * 60.00215 * 10 7 6 38 38 H 1.08996 * 109.46990 * 180.02562 * 10 7 6 39 39 H 1.09002 * 109.46954 * 300.00080 * 10 7 6 40 40 H 1.08000 * 119.97272 * 179.97438 * 11 6 5 41 41 H 0.96997 * 120.00034 * 245.00430 * 16 13 12 42 42 H 1.09006 * 109.46715 * 285.00199 * 17 16 13 43 43 H 1.08993 * 109.46869 * 44.99478 * 17 16 13 44 44 H 0.97003 * 119.99390 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2913 2.3752 0.0043 5 6 1.9208 3.6048 -0.0006 6 6 3.3018 3.6758 -0.0059 7 6 3.9860 5.0185 -0.0105 8 6 4.8559 5.1432 -1.2630 9 6 2.9323 6.1279 -0.0091 10 6 4.8644 5.1478 1.2355 11 6 4.0559 2.5171 -0.0057 12 6 3.4311 1.2849 0.0003 13 16 4.3929 -0.1915 -0.0002 14 8 5.7539 0.2162 0.0273 15 8 3.8511 -1.0231 -1.0171 16 7 4.1069 -0.9634 1.4367 17 6 2.7698 -1.4821 1.7361 18 6 2.8507 -2.4393 2.8973 19 1 3.8029 -2.6414 3.3651 20 6 1.7091 -3.0570 3.3623 21 7 1.7799 -3.8927 4.3753 22 14 0.0622 -2.7069 2.5535 23 1 -0.1629 -3.6744 1.4496 24 1 -1.0220 -2.8424 3.5592 25 1 0.0620 -1.3254 2.0086 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2127 2.3204 0.0080 30 1 1.3339 4.5113 -0.0006 31 1 4.2301 5.0511 -2.1507 32 1 5.3505 6.1145 -1.2667 33 1 5.6067 4.3530 -1.2641 34 1 2.3125 6.0390 0.8832 35 1 3.4271 7.0990 -0.0129 36 1 2.3065 6.0357 -0.8967 37 1 5.6151 4.3575 1.2344 38 1 5.3589 6.1191 1.2323 39 1 4.2446 5.0589 2.1277 40 1 5.1343 2.5752 -0.0103 41 1 4.8245 -1.0721 2.0801 42 1 2.1082 -0.6547 1.9927 43 1 2.3781 -2.0029 0.8624 44 1 0.9767 -4.3275 4.7022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827529100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:43 Heat of formation + Delta-G solvation = -118.014622 kcal Electronic energy + Delta-G solvation = -27318.375974 eV Core-core repulsion = 23555.034951 eV Total energy + Delta-G solvation = -3763.341023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53031 -39.69742 -38.19867 -36.91612 -36.59444 -36.44992 -34.21797 -32.63121 -30.56099 -29.30227 -28.56565 -28.08393 -27.98385 -24.28269 -23.93025 -23.58889 -21.01438 -20.21398 -19.57003 -19.19655 -17.96297 -17.64783 -17.52762 -17.14884 -16.70621 -16.44480 -16.13719 -15.57967 -15.26784 -15.15806 -15.09542 -14.60217 -14.42767 -14.27204 -13.97323 -13.89131 -13.56081 -13.36256 -13.20448 -13.10497 -13.08389 -12.95375 -12.72184 -12.66489 -12.51993 -12.35888 -12.14482 -11.99527 -11.75381 -11.62664 -11.58238 -11.48708 -11.32222 -10.85598 -10.46750 -10.21202 -9.27448 -8.30201 -6.37979 -0.54251 -0.17976 0.28134 1.35513 1.42824 1.52687 2.07887 2.16944 2.38482 2.45545 2.72987 3.04326 3.34430 3.64629 3.73110 3.89629 4.01414 4.13656 4.21137 4.26818 4.33868 4.36295 4.50040 4.54925 4.66362 4.68917 4.80872 4.83479 4.84835 4.93618 5.01169 5.06490 5.07325 5.12523 5.18336 5.20626 5.27812 5.39117 5.45042 5.45672 5.57244 5.66668 6.16655 6.21268 6.27483 6.67459 7.25795 8.84852 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.004600 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.686657 B = 6086.021627 C = 6733.072256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.329 6.329 3 C 0.202 3.798 4 C -0.223 4.223 5 C -0.021 4.021 6 C -0.130 4.130 7 C -0.024 4.024 8 C -0.145 4.145 9 C -0.143 4.143 10 C -0.145 4.145 11 C 0.003 3.997 12 C -0.716 4.716 13 S 2.706 3.294 14 O -0.991 6.991 15 O -0.988 6.988 16 N -1.104 6.104 17 C 0.242 3.758 18 C -0.544 4.544 19 H 0.042 0.958 20 C 0.009 3.991 21 N -0.945 5.945 22 Si 0.932 3.068 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.206 1.206 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.166 0.834 30 H 0.172 0.828 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.144 0.856 41 H 0.416 0.584 42 H 0.037 0.963 43 H 0.030 0.970 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 23.495 -10.525 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.241 6.241 3 C 0.154 3.846 4 C -0.242 4.242 5 C -0.039 4.039 6 C -0.132 4.132 7 C -0.024 4.024 8 C -0.202 4.202 9 C -0.200 4.200 10 C -0.203 4.203 11 C -0.016 4.016 12 C -0.807 4.807 13 S 2.799 3.201 14 O -0.982 6.982 15 O -0.978 6.978 16 N -0.864 5.864 17 C 0.117 3.883 18 C -0.584 4.584 19 H 0.061 0.939 20 C -0.189 4.189 21 N -0.585 5.585 22 Si 0.753 3.247 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.128 1.128 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.184 0.816 30 H 0.189 0.811 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.162 0.838 41 H 0.250 0.750 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.363 22.895 -11.216 25.716 hybrid contribution -0.649 -0.509 0.793 1.144 sum -4.012 22.386 -10.423 25.018 Atomic orbital electron populations 1.23639 0.75856 1.05522 1.03589 1.86297 1.24464 1.26602 1.86784 1.18662 0.90529 0.86112 0.89329 1.21683 1.01752 0.91352 1.09375 1.21674 0.94015 0.98101 0.90090 1.20138 0.94073 0.94963 1.03979 1.19513 0.95916 0.90443 0.96537 1.21971 0.99244 1.02599 0.96371 1.21979 0.98102 0.97401 1.02527 1.21974 0.99215 1.02569 0.96509 1.20734 1.00634 0.89693 0.90574 1.29831 1.04787 1.19085 1.26964 1.01000 0.72570 0.73803 0.72756 1.93488 1.33757 1.83891 1.87068 1.93517 1.80521 1.66758 1.56979 1.55179 1.20296 1.72824 1.38134 1.19181 0.79739 0.93949 0.95452 1.21452 0.95452 1.25972 1.15485 0.93943 1.25914 1.03885 0.93930 0.95176 1.70055 1.30768 1.30193 1.27437 0.86068 0.77485 0.82584 0.78533 1.19476 1.21033 1.12831 0.90347 0.89216 0.87954 0.81645 0.81119 0.92330 0.90452 0.93355 0.91704 0.90877 0.91442 0.93359 0.90447 0.92655 0.83799 0.74951 0.94555 0.95218 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.18 113.37 0.93 1.10 16 2 O -0.33 -11.11 5.59 -82.78 -0.46 -11.58 16 3 C 0.20 6.28 6.31 22.51 0.14 6.42 16 4 C -0.22 -4.96 9.04 22.37 0.20 -4.76 16 5 C -0.02 -0.39 8.97 22.25 0.20 -0.20 16 6 C -0.13 -2.81 4.76 -19.85 -0.09 -2.90 16 7 C -0.02 -0.38 0.85 -52.93 -0.05 -0.42 16 8 C -0.14 -2.18 8.29 71.98 0.60 -1.58 16 9 C -0.14 -1.50 7.13 71.98 0.51 -0.98 16 10 C -0.15 -2.34 8.29 71.98 0.60 -1.75 16 11 C 0.00 0.08 8.21 22.25 0.18 0.27 16 12 C -0.72 -24.02 5.90 22.36 0.13 -23.88 16 13 S 2.71 108.06 5.46 -56.49 -0.31 107.75 16 14 O -0.99 -40.38 16.97 -128.00 -2.17 -42.55 16 15 O -0.99 -45.09 16.75 -122.82 -2.06 -47.14 16 16 N -1.10 -47.59 5.99 -190.77 -1.14 -48.73 16 17 C 0.24 11.56 3.33 85.63 0.29 11.85 16 18 C -0.54 -31.08 9.83 25.60 0.25 -30.82 16 19 H 0.04 2.65 7.90 -2.91 -0.02 2.63 16 20 C 0.01 0.53 5.47 84.65 0.46 0.99 16 21 N -0.94 -58.11 13.96 21.45 0.30 -57.82 16 22 Si 0.93 40.44 26.85 68.60 1.84 42.28 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.21 -7.38 4.04 99.48 0.40 -6.98 16 26 H 0.08 1.58 7.43 -2.39 -0.02 1.56 16 27 H 0.09 1.51 7.67 -2.39 -0.02 1.49 16 28 H 0.10 2.46 7.09 -2.38 -0.02 2.44 16 29 H 0.17 2.57 6.30 -2.91 -0.02 2.55 16 30 H 0.17 1.89 5.89 -2.91 -0.02 1.87 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.84 7.38 -2.39 -0.02 0.83 16 34 H 0.06 0.63 7.51 -2.38 -0.02 0.61 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 0.60 7.51 -2.39 -0.02 0.59 16 37 H 0.05 0.90 7.38 -2.39 -0.02 0.88 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.14 3.92 6.37 -2.91 -0.02 3.91 16 41 H 0.42 17.12 8.54 -96.75 -0.83 16.29 16 42 H 0.04 1.63 5.73 -2.38 -0.01 1.62 16 43 H 0.03 1.47 6.57 -2.39 -0.02 1.45 16 44 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.56 352.66 0.24 -76.32 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.11 Total: 28.13 kcal Atomic # 6 Polarization: -51.02 SS G_CDS: 4.35 Total: -46.67 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -0.84 Total: -106.55 kcal Atomic # 8 Polarization: -96.58 SS G_CDS: -4.69 Total: -101.27 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.84 Total: 42.28 kcal Atomic # 16 Polarization: 108.06 SS G_CDS: -0.31 Total: 107.75 kcal Total: -76.56 0.24 -76.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827529100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.696 kcal (2) G-P(sol) polarization free energy of solvation -76.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds