Wall clock time and date at job start Tue Mar 31 2020 15:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 C 1.53006 * 109.46817 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47209 * 55.00557 * 4 3 2 6 6 C 1.53003 * 109.46629 * 175.00193 * 4 3 2 7 7 C 1.53002 * 109.46865 * 188.74999 * 6 4 3 8 8 S 1.81397 * 109.47507 * 295.00024 * 4 3 2 9 9 O 1.42108 * 110.54047 * 58.80059 * 8 4 3 10 10 O 1.42098 * 110.54507 * 195.55170 * 8 4 3 11 11 N 1.65600 * 104.45079 * 307.18200 * 8 4 3 12 12 C 1.39676 * 119.99781 * 292.57006 * 11 8 4 13 13 C 1.39001 * 120.03993 * 312.91757 * 12 11 8 14 14 C 1.38150 * 120.06152 * 179.69617 * 13 12 11 15 15 C 1.38166 * 120.14135 * 0.60141 * 14 13 12 16 16 C 1.38915 * 120.08155 * 359.67345 * 15 14 13 17 17 O 1.35746 * 120.03360 * 180.02562 * 16 15 14 18 18 C 1.34833 * 117.00195 * 186.09817 * 17 16 15 19 19 H 1.08006 * 119.99783 * 5.03134 * 18 17 16 20 20 C 1.38652 * 120.00243 * 185.03611 * 18 17 16 21 21 N 1.31557 * 119.99578 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99950 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47197 * 59.99882 * 22 20 18 24 24 H 1.48505 * 109.46812 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46975 * 299.99546 * 22 20 18 26 26 C 1.38746 * 120.03996 * 133.18795 * 12 11 8 27 27 H 1.09003 * 109.46643 * 59.99535 * 1 2 3 28 28 H 1.08992 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47175 * 299.99902 * 1 2 3 30 30 H 1.08997 * 109.47175 * 240.00098 * 2 1 3 31 31 H 1.08995 * 109.47145 * 119.99812 * 2 1 3 32 32 H 1.09009 * 109.47013 * 60.00411 * 3 2 1 33 33 H 1.08993 * 109.47746 * 299.99805 * 3 2 1 34 34 H 1.08997 * 109.47216 * 308.74526 * 6 4 3 35 35 H 1.08997 * 109.47434 * 68.75415 * 6 4 3 36 36 H 1.09003 * 109.47228 * 301.33071 * 7 6 4 37 37 H 1.09004 * 109.47398 * 61.32685 * 7 6 4 38 38 H 1.09002 * 109.47447 * 181.33020 * 7 6 4 39 39 H 0.96997 * 120.00401 * 112.57101 * 11 8 4 40 40 H 1.08003 * 119.97290 * 359.97438 * 13 12 11 41 41 H 1.08005 * 119.92941 * 180.27363 * 14 13 12 42 42 H 1.08001 * 119.96182 * 179.70204 * 15 14 13 43 43 H 0.97009 * 119.99612 * 180.02562 * 21 20 18 44 44 H 1.08005 * 120.07237 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0800 2.8795 -0.1250 7 6 5.5943 2.8659 -0.3435 8 16 4.1742 0.7199 1.5510 9 8 3.6904 -0.6075 1.7042 10 8 5.5489 1.0251 1.7410 11 7 3.3978 1.5768 2.7364 12 6 3.6936 2.9282 2.9288 13 6 5.0170 3.3496 2.9857 14 6 5.3102 4.6870 3.1697 15 6 4.2898 5.6080 3.3102 16 6 2.9652 5.1926 3.2600 17 8 1.9635 6.0983 3.3976 18 6 0.7065 5.6153 3.4662 19 1 0.5387 4.5487 3.4933 20 6 -0.3705 6.4877 3.5017 21 7 -0.1660 7.7868 3.4690 22 14 -2.1119 5.8183 3.5973 23 1 -2.2642 5.0098 4.8336 24 1 -3.0756 6.9479 3.6233 25 1 -2.3801 4.9653 2.4117 26 6 2.6670 3.8509 3.0690 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6768 1.9564 -0.8899 34 1 3.5951 3.3643 -0.9723 35 1 3.8497 3.4280 0.7883 36 1 6.0775 2.3601 0.4924 37 1 5.8232 2.3377 -1.2691 38 1 5.9612 3.8902 -0.4094 39 1 2.7376 1.1403 3.2971 40 1 5.8169 2.6314 2.8814 41 1 6.3392 5.0127 3.2091 42 1 4.5224 6.6521 3.4587 43 1 -0.9195 8.3972 3.4942 44 1 1.6378 3.5257 3.0292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844650519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:43 Heat of formation + Delta-G solvation = -84.134401 kcal Electronic energy + Delta-G solvation = -27453.048951 eV Core-core repulsion = 23691.177084 eV Total energy + Delta-G solvation = -3761.871867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.38629 -37.54935 -37.24350 -36.48724 -36.00147 -34.23331 -33.33191 -32.29692 -29.25821 -29.06009 -28.28701 -25.37957 -24.43405 -21.99750 -21.94099 -21.68268 -21.16142 -19.45571 -18.11206 -17.99414 -17.49916 -16.79584 -15.98519 -15.31306 -15.04077 -14.79863 -14.48096 -14.30588 -14.19520 -13.95774 -13.76450 -13.60594 -13.13865 -12.88692 -12.70270 -12.55296 -12.46813 -12.40718 -12.21227 -12.13360 -11.84090 -11.61636 -11.47109 -11.21653 -11.12842 -11.02347 -10.86090 -10.69823 -10.62693 -10.54530 -10.44424 -10.00112 -9.88704 -9.57843 -8.89294 -7.94741 -7.31161 -6.52591 -4.12363 0.22194 1.99606 2.26771 2.64275 3.07259 3.07950 3.11122 3.71340 3.89363 4.07664 4.27830 4.42009 4.69451 4.84356 5.01514 5.03940 5.11747 5.17283 5.31750 5.37881 5.40206 5.53642 5.61085 5.71500 5.73130 5.80729 5.86473 5.95944 6.01906 6.05695 6.09520 6.12733 6.22577 6.26988 6.28272 6.44121 6.53730 6.69810 6.93625 7.09743 7.19721 7.25882 7.34803 7.72757 7.91226 8.92725 9.61501 10.64943 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012038 B = 0.005079 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.491139 B = 5511.740797 C = 6937.211353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.161 4.161 3 C -0.104 4.104 4 C -0.577 4.577 5 H 0.132 0.868 6 C -0.114 4.114 7 C -0.190 4.190 8 S 2.607 3.393 9 O -0.961 6.961 10 O -0.944 6.944 11 N -1.052 6.052 12 C 0.178 3.822 13 C -0.232 4.232 14 C -0.060 4.060 15 C -0.195 4.195 16 C 0.164 3.836 17 O -0.173 6.173 18 C -0.393 4.393 19 H 0.091 0.909 20 C 0.042 3.958 21 N -0.860 5.860 22 Si 0.938 3.062 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.244 4.244 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.421 0.579 40 H 0.144 0.856 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.271 0.729 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 -11.849 -6.817 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.199 4.199 3 C -0.143 4.143 4 C -0.688 4.688 5 H 0.150 0.850 6 C -0.152 4.152 7 C -0.247 4.247 8 S 2.701 3.299 9 O -0.951 6.951 10 O -0.934 6.934 11 N -0.803 5.803 12 C 0.083 3.917 13 C -0.254 4.254 14 C -0.079 4.079 15 C -0.215 4.215 16 C 0.109 3.891 17 O -0.076 6.076 18 C -0.470 4.470 19 H 0.108 0.892 20 C -0.163 4.163 21 N -0.494 5.494 22 Si 0.762 3.238 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.267 4.267 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.257 0.743 40 H 0.161 0.839 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.768 -12.074 -6.783 15.002 hybrid contribution -1.748 -0.088 -0.270 1.771 sum 4.020 -12.162 -7.053 14.622 Atomic orbital electron populations 1.21723 0.95120 1.01732 1.02179 1.22110 0.97185 0.96150 1.04425 1.21483 0.89304 0.98234 1.05237 1.30382 1.06974 1.09675 1.21723 0.84973 1.21522 0.96903 0.91302 1.05488 1.22378 0.95208 1.03542 1.03619 1.05367 0.74769 0.73512 0.76218 1.93536 1.81227 1.34922 1.85403 1.93472 1.31899 1.84095 1.83949 1.53070 1.58680 1.19242 1.49334 1.17043 0.93190 0.81129 1.00349 1.21332 0.94886 0.97453 1.11724 1.20556 0.97914 0.92169 0.97269 1.20328 0.90077 1.00119 1.10977 1.19166 0.89419 0.88405 0.92085 1.84018 1.14085 1.31530 1.78017 1.21230 0.79426 0.93388 1.52910 0.89184 1.25266 0.99534 0.95041 0.96494 1.70023 1.32308 1.01507 1.45579 0.85832 0.80281 0.78439 0.79214 1.19461 1.20226 1.19493 1.21074 0.99140 0.92772 1.13717 0.92773 0.92563 0.92276 0.91664 0.88916 0.89783 0.89822 0.90410 0.88829 0.88274 0.93219 0.91677 0.74265 0.83879 0.86339 0.86326 0.91889 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.16 -1.78 5.62 -26.73 -0.15 -1.93 16 3 C -0.10 -1.20 4.60 -26.73 -0.12 -1.33 16 4 C -0.58 -6.71 2.45 -26.73 -0.07 -6.78 16 5 H 0.13 1.24 8.12 -51.93 -0.42 0.82 16 6 C -0.11 -1.46 5.18 -26.73 -0.14 -1.60 16 7 C -0.19 -2.33 9.74 37.16 0.36 -1.97 16 8 S 2.61 35.17 5.01 -107.50 -0.54 34.63 16 9 O -0.96 -14.31 15.21 -57.54 -0.88 -15.18 16 10 O -0.94 -14.42 11.68 -57.54 -0.67 -15.09 16 11 N -1.05 -14.76 4.89 32.40 0.16 -14.60 16 12 C 0.18 2.96 4.02 -83.81 -0.34 2.63 16 13 C -0.23 -3.86 8.24 -39.33 -0.32 -4.18 16 14 C -0.06 -1.00 10.03 -39.64 -0.40 -1.39 16 15 C -0.19 -3.77 9.99 -39.36 -0.39 -4.17 16 16 C 0.16 3.63 6.64 -39.14 -0.26 3.37 16 17 O -0.17 -4.63 9.76 0.05 0.00 -4.63 16 18 C -0.39 -10.32 9.44 30.89 0.29 -10.03 16 19 H 0.09 2.16 5.29 -52.48 -0.28 1.88 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.21 13.67 55.48 0.76 -23.45 16 22 Si 0.94 19.61 29.55 -169.99 -5.02 14.59 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.24 -4.72 8.69 -39.20 -0.34 -5.07 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.12 5.18 -51.93 -0.27 0.85 16 32 H 0.08 1.04 7.49 -51.92 -0.39 0.65 16 33 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 35 H 0.09 1.39 4.35 -51.93 -0.23 1.16 16 36 H 0.10 1.33 4.81 -51.93 -0.25 1.08 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.42 5.13 8.92 -34.47 -0.31 4.82 16 40 H 0.14 2.32 5.61 -52.48 -0.29 2.03 16 41 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 42 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.13 2.53 5.71 -52.48 -0.30 2.23 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -30.63 356.16 -8.52 -39.15 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.10 Total: 11.85 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: -1.60 Total: -32.64 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.92 Total: -38.05 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.55 Total: -34.90 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 35.17 SS G_CDS: -0.54 Total: 34.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.63 -8.52 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844650519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.980 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds