Wall clock time and date at job start Tue Mar 31 2020 15:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 C 1.53006 * 109.46817 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47209 * 55.00557 * 4 3 2 6 6 C 1.53003 * 109.46629 * 175.00193 * 4 3 2 7 7 C 1.53002 * 109.46865 * 188.74999 * 6 4 3 8 8 S 1.81397 * 109.47507 * 295.00024 * 4 3 2 9 9 O 1.42108 * 110.54047 * 58.80059 * 8 4 3 10 10 O 1.42098 * 110.54507 * 195.55170 * 8 4 3 11 11 N 1.65600 * 104.45079 * 307.18200 * 8 4 3 12 12 C 1.39676 * 119.99781 * 292.57006 * 11 8 4 13 13 C 1.39001 * 120.03993 * 312.91757 * 12 11 8 14 14 C 1.38150 * 120.06152 * 179.69617 * 13 12 11 15 15 C 1.38166 * 120.14135 * 0.60141 * 14 13 12 16 16 C 1.38915 * 120.08155 * 359.67345 * 15 14 13 17 17 O 1.35746 * 120.03360 * 180.02562 * 16 15 14 18 18 C 1.34833 * 117.00195 * 186.09817 * 17 16 15 19 19 H 1.08006 * 119.99783 * 5.03134 * 18 17 16 20 20 C 1.38652 * 120.00243 * 185.03611 * 18 17 16 21 21 N 1.31557 * 119.99578 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99950 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47197 * 59.99882 * 22 20 18 24 24 H 1.48505 * 109.46812 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46975 * 299.99546 * 22 20 18 26 26 C 1.38746 * 120.03996 * 133.18795 * 12 11 8 27 27 H 1.09003 * 109.46643 * 59.99535 * 1 2 3 28 28 H 1.08992 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47175 * 299.99902 * 1 2 3 30 30 H 1.08997 * 109.47175 * 240.00098 * 2 1 3 31 31 H 1.08995 * 109.47145 * 119.99812 * 2 1 3 32 32 H 1.09009 * 109.47013 * 60.00411 * 3 2 1 33 33 H 1.08993 * 109.47746 * 299.99805 * 3 2 1 34 34 H 1.08997 * 109.47216 * 308.74526 * 6 4 3 35 35 H 1.08997 * 109.47434 * 68.75415 * 6 4 3 36 36 H 1.09003 * 109.47228 * 301.33071 * 7 6 4 37 37 H 1.09004 * 109.47398 * 61.32685 * 7 6 4 38 38 H 1.09002 * 109.47447 * 181.33020 * 7 6 4 39 39 H 0.96997 * 120.00401 * 112.57101 * 11 8 4 40 40 H 1.08003 * 119.97290 * 359.97438 * 13 12 11 41 41 H 1.08005 * 119.92941 * 180.27363 * 14 13 12 42 42 H 1.08001 * 119.96182 * 179.70204 * 15 14 13 43 43 H 0.97009 * 119.99612 * 180.02562 * 21 20 18 44 44 H 1.08005 * 120.07237 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0800 2.8795 -0.1250 7 6 5.5943 2.8659 -0.3435 8 16 4.1742 0.7199 1.5510 9 8 3.6904 -0.6075 1.7042 10 8 5.5489 1.0251 1.7410 11 7 3.3978 1.5768 2.7364 12 6 3.6936 2.9282 2.9288 13 6 5.0170 3.3496 2.9857 14 6 5.3102 4.6870 3.1697 15 6 4.2898 5.6080 3.3102 16 6 2.9652 5.1926 3.2600 17 8 1.9635 6.0983 3.3976 18 6 0.7065 5.6153 3.4662 19 1 0.5387 4.5487 3.4933 20 6 -0.3705 6.4877 3.5017 21 7 -0.1660 7.7868 3.4690 22 14 -2.1119 5.8183 3.5973 23 1 -2.2642 5.0098 4.8336 24 1 -3.0756 6.9479 3.6233 25 1 -2.3801 4.9653 2.4117 26 6 2.6670 3.8509 3.0690 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6768 1.9564 -0.8899 34 1 3.5951 3.3643 -0.9723 35 1 3.8497 3.4280 0.7883 36 1 6.0775 2.3601 0.4924 37 1 5.8232 2.3377 -1.2691 38 1 5.9612 3.8902 -0.4094 39 1 2.7376 1.1403 3.2971 40 1 5.8169 2.6314 2.8814 41 1 6.3392 5.0127 3.2091 42 1 4.5224 6.6521 3.4587 43 1 -0.9195 8.3972 3.4942 44 1 1.6378 3.5257 3.0292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844650519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:42 Heat of formation + Delta-G solvation = -103.338857 kcal Electronic energy + Delta-G solvation = -27453.881719 eV Core-core repulsion = 23691.177084 eV Total energy + Delta-G solvation = -3762.704634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94862 -38.99191 -38.39857 -37.63583 -37.15855 -35.61439 -34.26576 -34.15705 -30.79178 -30.07192 -29.68677 -27.24676 -25.34303 -23.45445 -23.18274 -22.98925 -22.05433 -20.71409 -19.75619 -19.34303 -18.80096 -17.95618 -17.41333 -16.72640 -16.46786 -16.08578 -15.83145 -15.68549 -15.45240 -15.25009 -14.99384 -14.68529 -14.54591 -14.36971 -13.82771 -13.76557 -13.59983 -13.46808 -13.41045 -13.29151 -13.19535 -13.03402 -12.66071 -12.57843 -12.37213 -12.17584 -12.15280 -12.00762 -11.92470 -11.60238 -11.39152 -11.35763 -11.31532 -10.96446 -10.72169 -9.39877 -8.91768 -8.43893 -6.11455 -0.87317 0.52679 0.73481 1.37031 1.46343 1.49558 1.51734 2.18792 2.63871 2.82354 3.00813 3.17704 3.35547 3.53784 3.66231 3.94002 4.07348 4.16747 4.21042 4.25511 4.39503 4.43896 4.47026 4.56096 4.61172 4.73103 4.76768 4.85242 4.91322 4.97091 5.07037 5.13543 5.14148 5.19405 5.22534 5.24106 5.29969 5.43880 5.56257 5.58741 5.70142 5.75280 5.94012 6.05176 6.26346 7.01361 7.81642 8.78600 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012038 B = 0.005079 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.491139 B = 5511.740797 C = 6937.211353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.163 4.163 3 C -0.107 4.107 4 C -0.562 4.562 5 H 0.164 0.836 6 C -0.117 4.117 7 C -0.193 4.193 8 S 2.611 3.389 9 O -0.972 6.972 10 O -0.961 6.961 11 N -1.051 6.051 12 C 0.194 3.806 13 C -0.219 4.219 14 C -0.047 4.047 15 C -0.205 4.205 16 C 0.132 3.868 17 O -0.226 6.226 18 C -0.408 4.408 19 H 0.103 0.897 20 C -0.019 4.019 21 N -0.918 5.918 22 Si 1.009 2.991 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.255 1.255 26 C -0.244 4.244 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.429 0.571 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.118 0.882 43 H 0.271 0.729 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.877 -14.288 -8.126 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.145 4.145 4 C -0.675 4.675 5 H 0.182 0.818 6 C -0.155 4.155 7 C -0.250 4.250 8 S 2.708 3.292 9 O -0.962 6.962 10 O -0.951 6.951 11 N -0.802 5.802 12 C 0.098 3.902 13 C -0.241 4.241 14 C -0.066 4.066 15 C -0.225 4.225 16 C 0.081 3.919 17 O -0.132 6.132 18 C -0.484 4.484 19 H 0.120 0.880 20 C -0.217 4.217 21 N -0.556 5.556 22 Si 0.829 3.171 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.179 1.179 26 C -0.267 4.267 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.267 0.733 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.136 0.864 43 H 0.080 0.920 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.504 -14.576 -8.065 17.883 hybrid contribution -1.670 0.481 0.057 1.739 sum 4.834 -14.094 -8.008 16.916 Atomic orbital electron populations 1.21755 0.94719 1.02405 1.02167 1.22125 0.97651 0.95611 1.04618 1.21532 0.89096 0.98741 1.05174 1.30274 1.07043 1.09230 1.20927 0.81824 1.21522 0.97685 0.91632 1.04696 1.22404 0.94410 1.03860 1.04347 1.05238 0.74187 0.73144 0.76594 1.93532 1.81295 1.35618 1.85803 1.93446 1.32932 1.84236 1.84481 1.53092 1.58923 1.17925 1.50252 1.16948 0.92632 0.81872 0.98730 1.21645 0.95063 0.97781 1.09588 1.20932 0.98991 0.91517 0.95118 1.20540 0.89764 1.00901 1.11326 1.19666 0.89656 0.89192 0.93381 1.83984 1.14855 1.33425 1.80918 1.21711 0.79907 0.94162 1.52669 0.87973 1.26456 1.03937 0.95215 0.96093 1.70172 1.33528 1.03115 1.48784 0.84777 0.74464 0.77941 0.79933 1.18383 1.20006 1.17939 1.21053 0.99682 0.92246 1.13679 0.92089 0.91602 0.93042 0.90119 0.90028 0.91079 0.88756 0.89463 0.91218 0.89253 0.91040 0.91620 0.73325 0.82536 0.82592 0.86404 0.91961 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.91 71.98 0.71 -2.14 16 2 C -0.16 -3.19 5.62 30.59 0.17 -3.02 16 3 C -0.11 -2.23 4.60 30.60 0.14 -2.08 16 4 C -0.56 -11.47 2.45 30.60 0.07 -11.40 16 5 H 0.16 2.38 8.12 -2.39 -0.02 2.36 16 6 C -0.12 -2.72 5.18 30.60 0.16 -2.56 16 7 C -0.19 -4.17 9.74 71.98 0.70 -3.46 16 8 S 2.61 64.54 5.01 -56.49 -0.28 64.26 16 9 O -0.97 -26.87 15.21 -127.65 -1.94 -28.81 16 10 O -0.96 -26.92 11.68 -127.65 -1.49 -28.41 16 11 N -1.05 -27.87 4.89 -51.41 -0.25 -28.12 16 12 C 0.19 6.23 4.02 38.20 0.15 6.38 16 13 C -0.22 -6.81 8.24 22.43 0.18 -6.63 16 14 C -0.05 -1.47 10.03 22.23 0.22 -1.24 16 15 C -0.21 -7.98 9.99 22.41 0.22 -7.75 16 16 C 0.13 6.03 6.64 22.56 0.15 6.18 16 17 O -0.23 -12.67 9.76 -22.72 -0.22 -12.90 16 18 C -0.41 -22.28 9.44 67.92 0.64 -21.64 16 19 H 0.10 5.04 5.29 -2.91 -0.02 5.02 16 20 C -0.02 -1.03 5.49 84.83 0.47 -0.56 16 21 N -0.92 -54.26 13.67 21.61 0.30 -53.96 16 22 Si 1.01 40.90 29.55 68.60 2.03 42.92 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 24 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 26 C -0.24 -9.50 8.69 22.52 0.20 -9.30 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.81 5.18 -2.39 -0.01 1.79 16 32 H 0.07 1.67 7.49 -2.38 -0.02 1.65 16 33 H 0.09 1.80 8.13 -2.39 -0.02 1.78 16 34 H 0.09 1.89 8.11 -2.39 -0.02 1.87 16 35 H 0.07 1.96 4.35 -2.39 -0.01 1.95 16 36 H 0.09 2.13 4.81 -2.39 -0.01 2.12 16 37 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.43 9.93 8.92 -96.75 -0.86 9.06 16 40 H 0.16 4.60 5.61 -2.91 -0.02 4.59 16 41 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 44 H 0.13 4.99 5.71 -2.91 -0.02 4.98 16 Total: -1.00 -68.69 356.16 2.50 -66.19 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.17 Total: 38.05 kcal Atomic # 6 Polarization: -63.43 SS G_CDS: 4.20 Total: -59.23 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: 0.04 Total: -82.08 kcal Atomic # 8 Polarization: -66.46 SS G_CDS: -3.66 Total: -70.12 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: 64.54 SS G_CDS: -0.28 Total: 64.26 kcal Total: -68.69 2.50 -66.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844650519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.148 kcal (2) G-P(sol) polarization free energy of solvation -68.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds