Wall clock time and date at job start Tue Mar 31 2020 15:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47480 * 2 1 4 4 H 1.09008 * 109.47098 * 54.42667 * 3 2 1 5 5 C 1.50695 * 109.47478 * 174.42829 * 3 2 1 6 6 H 1.07997 * 120.00127 * 119.99624 * 5 3 2 7 7 C 1.37878 * 120.00024 * 300.00355 * 5 3 2 8 8 N 1.31513 * 119.99881 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99939 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47287 * 89.99546 * 9 7 5 11 11 H 1.48501 * 109.46978 * 209.99618 * 9 7 5 12 12 H 1.48504 * 109.47206 * 329.99745 * 9 7 5 13 13 N 1.46905 * 109.46951 * 294.43193 * 3 2 1 14 14 C 1.46903 * 110.99924 * 152.67893 * 13 3 2 15 15 C 1.53001 * 109.46840 * 175.65911 * 14 13 3 16 16 H 1.09002 * 109.46727 * 304.99491 * 15 14 13 17 17 O 1.42900 * 109.47349 * 64.99824 * 15 14 13 18 18 C 1.50694 * 109.47007 * 185.00108 * 15 14 13 19 19 C 1.38238 * 120.00220 * 99.99446 * 18 15 14 20 20 C 1.38233 * 119.99881 * 179.97438 * 19 18 15 21 21 C 1.38241 * 120.00351 * 0.02562 * 20 19 18 22 22 S 1.76197 * 119.99999 * 179.97438 * 21 20 19 23 23 C 1.81403 * 104.44771 * 89.99872 * 22 21 20 24 24 O 1.42100 * 104.27888 * 333.92811 * 22 21 20 25 25 O 1.42096 * 104.27580 * 206.06694 * 22 21 20 26 26 C 1.38234 * 119.99346 * 0.24838 * 21 20 19 27 27 C 1.38234 * 120.00343 * 359.47250 * 26 21 20 28 28 H 1.09002 * 109.47349 * 60.24521 * 1 2 3 29 29 H 1.08998 * 109.47389 * 180.25114 * 1 2 3 30 30 H 1.09005 * 109.47191 * 300.25098 * 1 2 3 31 31 H 1.08996 * 109.46800 * 239.99639 * 2 1 3 32 32 H 1.09003 * 109.46651 * 120.00061 * 2 1 3 33 33 H 0.96998 * 119.99526 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99904 * 28.72198 * 13 3 2 35 35 H 1.08995 * 109.47196 * 55.65936 * 14 13 3 36 36 H 1.08994 * 109.46742 * 295.65642 * 14 13 3 37 37 H 0.96691 * 113.99718 * 59.99673 * 17 15 14 38 38 H 1.07994 * 119.99893 * 359.97438 * 19 18 15 39 39 H 1.08007 * 119.99770 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47349 * 300.00073 * 23 22 21 41 41 H 1.09007 * 109.47305 * 59.99826 * 23 22 21 42 42 H 1.08993 * 109.47257 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.99047 * 179.72977 * 26 21 20 44 44 H 1.07994 * 119.99806 * 180.27805 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5975 1.9843 0.8359 5 6 3.5407 1.4447 0.1379 6 1 4.1533 1.8866 -0.6339 7 6 4.1316 0.8824 1.2495 8 7 3.3857 0.3446 2.1897 9 14 5.9918 0.8845 1.4202 10 1 6.4231 2.1198 2.1226 11 1 6.4185 -0.3040 2.2016 12 1 6.6126 0.8395 0.0719 13 7 1.6632 2.0950 -1.2610 14 6 1.5292 3.5471 -1.0828 15 6 1.2433 4.2026 -2.4354 16 1 2.0202 3.9219 -3.1466 17 8 -0.0271 3.7622 -2.9192 18 6 1.2277 5.7008 -2.2741 19 6 2.3365 6.4459 -2.6295 20 6 2.3218 7.8203 -2.4821 21 6 1.1986 8.4496 -1.9787 22 16 1.1803 10.2014 -1.7901 23 6 0.5401 10.8200 -3.3707 24 8 2.5487 10.5515 -1.6350 25 8 0.2424 10.4318 -0.7478 26 6 0.0919 7.7039 -1.6180 27 6 0.1044 6.3301 -1.7709 28 1 -0.3634 0.5100 -0.8922 29 1 -0.3634 -1.0276 0.0045 30 1 -0.3634 0.5177 0.8878 31 1 1.8932 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.8014 -0.0507 2.9718 34 1 0.8148 1.6968 -1.6349 35 1 2.4552 3.9497 -0.6723 36 1 0.7074 3.7546 -0.3975 37 1 -0.7668 3.9786 -2.3352 38 1 3.2141 5.9543 -3.0224 39 1 3.1883 8.4024 -2.7594 40 1 1.2003 10.5046 -4.1786 41 1 -0.4590 10.4185 -3.5402 42 1 0.4938 11.9086 -3.3428 43 1 -0.7840 8.1952 -1.2207 44 1 -0.7618 5.7480 -1.4933 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846996257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:46 Heat of formation + Delta-G solvation = -96.069656 kcal Electronic energy + Delta-G solvation = -25538.603654 eV Core-core repulsion = 21776.214236 eV Total energy + Delta-G solvation = -3762.389418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.91314 -37.44198 -37.36958 -36.20201 -35.80424 -32.63983 -31.98242 -31.23273 -30.97665 -29.89817 -27.73165 -26.06511 -23.54185 -23.10755 -22.38005 -21.17331 -19.57338 -19.31485 -18.23158 -17.00407 -16.53245 -16.48877 -16.26912 -15.57004 -15.41815 -14.88927 -14.70609 -14.44951 -14.01790 -13.88235 -13.71836 -13.60698 -13.50633 -13.22119 -13.02643 -12.60823 -12.35157 -12.32127 -12.24653 -12.10804 -11.57439 -11.44149 -11.28991 -11.20183 -11.18185 -10.88594 -10.84964 -10.65883 -10.30126 -9.98197 -9.71348 -9.64898 -9.24198 -9.18349 -9.12142 -8.36927 -7.30468 -5.99200 -4.03648 -0.24999 0.59722 1.11073 2.57641 3.18380 3.31271 3.38055 3.42133 3.66825 3.80362 4.35948 4.38263 4.41855 4.44957 4.47534 4.65037 4.67766 5.07700 5.14929 5.21383 5.28460 5.34396 5.38535 5.53212 5.59756 5.74728 5.84422 5.95278 6.06795 6.13332 6.13992 6.31382 6.39563 6.41050 6.62305 6.81274 7.02984 7.13968 7.42628 7.59195 7.75491 7.88626 8.23216 8.36572 8.71545 9.03842 9.61617 11.06216 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.002823 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.093976 B = 9917.596100 C =11001.782198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.045 3.955 15 C 0.138 3.862 16 H 0.121 0.879 17 O -0.551 6.551 18 C -0.048 4.048 19 C -0.128 4.128 20 C -0.022 4.022 21 C -0.667 4.667 22 S 2.503 3.497 23 C -0.651 4.651 24 O -0.938 6.938 25 O -0.939 6.939 26 C -0.022 4.022 27 C -0.134 4.134 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.260 0.740 34 H 0.324 0.676 35 H 0.084 0.916 36 H 0.019 0.981 37 H 0.368 0.632 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.141 0.859 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.912 17.613 -11.953 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.314 5.314 14 C -0.085 4.085 15 C 0.079 3.921 16 H 0.138 0.862 17 O -0.356 6.356 18 C -0.049 4.049 19 C -0.147 4.147 20 C -0.041 4.041 21 C -0.754 4.754 22 S 2.683 3.317 23 C -0.800 4.800 24 O -0.935 6.935 25 O -0.936 6.936 26 C -0.041 4.041 27 C -0.153 4.153 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.103 0.897 36 H 0.037 0.963 37 H 0.215 0.785 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.158 0.842 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.618 17.783 -11.770 22.645 hybrid contribution -0.358 -0.377 0.592 0.788 sum -7.976 17.406 -11.179 22.171 Atomic orbital electron populations 1.21885 0.99581 0.99674 0.99641 1.21778 0.91268 1.00299 1.03148 1.19160 0.95535 0.90014 0.84101 0.98104 1.21202 0.91213 1.36649 1.04297 0.92073 1.24967 0.98182 0.95574 0.95841 1.69868 1.34755 1.39431 1.09544 0.86545 0.85684 0.77390 0.78068 1.20855 1.21334 1.19873 1.60619 1.37962 1.00620 1.32193 1.22436 1.01141 0.91890 0.93066 1.21241 0.86646 0.86122 0.98076 0.86166 1.86652 1.16161 1.82048 1.50741 1.21107 0.93674 0.97576 0.92541 1.21214 0.98619 0.93744 1.01087 1.20930 0.95628 0.95262 0.92256 1.30427 1.02262 1.25370 1.17318 1.05032 0.75031 0.74615 0.76999 1.30232 1.13873 1.12886 1.23031 1.93591 1.32255 1.82492 1.85212 1.93585 1.64484 1.84495 1.51082 1.20858 0.96254 0.94205 0.92747 1.21020 0.98713 0.94696 1.00906 0.94509 0.94338 0.93961 0.93986 0.88195 0.93045 0.85784 0.89736 0.96256 0.78468 0.84490 0.84045 0.84983 0.85019 0.85148 0.84160 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.75 37.16 0.36 -2.50 16 2 C -0.13 -2.94 5.34 -26.73 -0.14 -3.08 16 3 C 0.22 5.34 2.02 -68.87 -0.14 5.20 16 4 H 0.00 0.04 7.82 -51.92 -0.41 -0.37 16 5 C -0.49 -13.47 8.66 -34.44 -0.30 -13.77 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.37 11.29 55.43 0.63 -24.74 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -13.91 6.28 -107.95 -0.68 -14.58 16 14 C 0.05 0.79 5.09 -3.82 -0.02 0.77 16 15 C 0.14 1.92 3.45 -27.89 -0.10 1.82 16 16 H 0.12 1.74 8.00 -51.93 -0.42 1.32 16 17 O -0.55 -7.22 12.79 -35.23 -0.45 -7.67 16 18 C -0.05 -0.59 4.97 -104.63 -0.52 -1.11 16 19 C -0.13 -1.47 9.67 -39.58 -0.38 -1.86 16 20 C -0.02 -0.23 9.47 -39.58 -0.37 -0.60 16 21 C -0.67 -6.61 5.66 -39.58 -0.22 -6.83 16 22 S 2.50 20.60 5.80 -107.50 -0.62 19.98 16 23 C -0.65 -2.44 10.80 101.05 1.09 -1.35 16 24 O -0.94 -10.89 17.13 -57.54 -0.99 -11.88 16 25 O -0.94 -10.77 17.12 -57.54 -0.98 -11.75 16 26 C -0.02 -0.22 9.47 -39.58 -0.37 -0.59 16 27 C -0.13 -1.46 9.32 -39.58 -0.37 -1.83 16 28 H 0.04 0.63 6.47 -51.93 -0.34 0.29 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.32 6.15 6.16 -39.29 -0.24 5.91 16 35 H 0.08 1.65 8.02 -51.93 -0.42 1.23 16 36 H 0.02 0.33 8.13 -51.93 -0.42 -0.09 16 37 H 0.37 3.62 7.50 45.56 0.34 3.96 16 38 H 0.14 1.40 8.04 -52.49 -0.42 0.98 16 39 H 0.14 1.20 7.57 -52.48 -0.40 0.80 16 40 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 42 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.14 1.13 7.56 -52.48 -0.40 0.74 16 44 H 0.13 1.13 6.79 -52.49 -0.36 0.77 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -35.19 373.22 -9.93 -45.12 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.86 Total: 7.83 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -1.58 Total: -24.32 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.05 Total: -39.32 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -2.42 Total: -31.31 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 20.60 SS G_CDS: -0.62 Total: 19.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.19 -9.93 -45.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.949 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds