Wall clock time and date at job start Tue Mar 31 2020 15:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47480 * 2 1 4 4 H 1.09008 * 109.47098 * 54.42667 * 3 2 1 5 5 C 1.50695 * 109.47478 * 174.42829 * 3 2 1 6 6 H 1.07997 * 120.00127 * 119.99624 * 5 3 2 7 7 C 1.37878 * 120.00024 * 300.00355 * 5 3 2 8 8 N 1.31513 * 119.99881 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99939 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47287 * 89.99546 * 9 7 5 11 11 H 1.48501 * 109.46978 * 209.99618 * 9 7 5 12 12 H 1.48504 * 109.47206 * 329.99745 * 9 7 5 13 13 N 1.46905 * 109.46951 * 294.43193 * 3 2 1 14 14 C 1.46903 * 110.99924 * 152.67893 * 13 3 2 15 15 C 1.53001 * 109.46840 * 175.65911 * 14 13 3 16 16 H 1.09002 * 109.46727 * 304.99491 * 15 14 13 17 17 O 1.42900 * 109.47349 * 64.99824 * 15 14 13 18 18 C 1.50694 * 109.47007 * 185.00108 * 15 14 13 19 19 C 1.38238 * 120.00220 * 99.99446 * 18 15 14 20 20 C 1.38233 * 119.99881 * 179.97438 * 19 18 15 21 21 C 1.38241 * 120.00351 * 0.02562 * 20 19 18 22 22 S 1.76197 * 119.99999 * 179.97438 * 21 20 19 23 23 C 1.81403 * 104.44771 * 89.99872 * 22 21 20 24 24 O 1.42100 * 104.27888 * 333.92811 * 22 21 20 25 25 O 1.42096 * 104.27580 * 206.06694 * 22 21 20 26 26 C 1.38234 * 119.99346 * 0.24838 * 21 20 19 27 27 C 1.38234 * 120.00343 * 359.47250 * 26 21 20 28 28 H 1.09002 * 109.47349 * 60.24521 * 1 2 3 29 29 H 1.08998 * 109.47389 * 180.25114 * 1 2 3 30 30 H 1.09005 * 109.47191 * 300.25098 * 1 2 3 31 31 H 1.08996 * 109.46800 * 239.99639 * 2 1 3 32 32 H 1.09003 * 109.46651 * 120.00061 * 2 1 3 33 33 H 0.96998 * 119.99526 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99904 * 28.72198 * 13 3 2 35 35 H 1.08995 * 109.47196 * 55.65936 * 14 13 3 36 36 H 1.08994 * 109.46742 * 295.65642 * 14 13 3 37 37 H 0.96691 * 113.99718 * 59.99673 * 17 15 14 38 38 H 1.07994 * 119.99893 * 359.97438 * 19 18 15 39 39 H 1.08007 * 119.99770 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47349 * 300.00073 * 23 22 21 41 41 H 1.09007 * 109.47305 * 59.99826 * 23 22 21 42 42 H 1.08993 * 109.47257 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.99047 * 179.72977 * 26 21 20 44 44 H 1.07994 * 119.99806 * 180.27805 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5975 1.9843 0.8359 5 6 3.5407 1.4447 0.1379 6 1 4.1533 1.8866 -0.6339 7 6 4.1316 0.8824 1.2495 8 7 3.3857 0.3446 2.1897 9 14 5.9918 0.8845 1.4202 10 1 6.4231 2.1198 2.1226 11 1 6.4185 -0.3040 2.2016 12 1 6.6126 0.8395 0.0719 13 7 1.6632 2.0950 -1.2610 14 6 1.5292 3.5471 -1.0828 15 6 1.2433 4.2026 -2.4354 16 1 2.0202 3.9219 -3.1466 17 8 -0.0271 3.7622 -2.9192 18 6 1.2277 5.7008 -2.2741 19 6 2.3365 6.4459 -2.6295 20 6 2.3218 7.8203 -2.4821 21 6 1.1986 8.4496 -1.9787 22 16 1.1803 10.2014 -1.7901 23 6 0.5401 10.8200 -3.3707 24 8 2.5487 10.5515 -1.6350 25 8 0.2424 10.4318 -0.7478 26 6 0.0919 7.7039 -1.6180 27 6 0.1044 6.3301 -1.7709 28 1 -0.3634 0.5100 -0.8922 29 1 -0.3634 -1.0276 0.0045 30 1 -0.3634 0.5177 0.8878 31 1 1.8932 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.8014 -0.0507 2.9718 34 1 0.8148 1.6968 -1.6349 35 1 2.4552 3.9497 -0.6723 36 1 0.7074 3.7546 -0.3975 37 1 -0.7668 3.9786 -2.3352 38 1 3.2141 5.9543 -3.0224 39 1 3.1883 8.4024 -2.7594 40 1 1.2003 10.5046 -4.1786 41 1 -0.4590 10.4185 -3.5402 42 1 0.4938 11.9086 -3.3428 43 1 -0.7840 8.1952 -1.2207 44 1 -0.7618 5.7480 -1.4933 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846996257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:45 Heat of formation + Delta-G solvation = -124.002506 kcal Electronic energy + Delta-G solvation = -25539.814914 eV Core-core repulsion = 21776.214236 eV Total energy + Delta-G solvation = -3763.600677 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.82764 -38.69027 -38.12930 -37.37188 -36.95490 -34.38774 -33.31602 -32.41165 -32.03918 -30.27296 -29.25862 -27.71303 -25.04558 -24.00623 -23.78868 -22.30337 -21.42268 -20.02412 -19.00996 -18.41853 -17.96332 -17.33113 -17.12979 -16.89281 -16.58680 -16.31793 -15.80457 -15.67799 -15.49397 -14.98531 -14.63809 -14.43515 -14.29754 -14.09763 -13.91722 -13.86446 -13.81358 -13.53207 -13.13180 -13.12449 -13.03151 -12.96465 -12.75258 -12.57671 -12.36098 -12.15155 -12.09592 -12.00018 -11.85704 -11.63317 -11.52991 -11.07586 -10.97262 -10.45371 -10.16484 -10.05373 -9.04702 -8.09094 -6.21132 -0.84316 -0.24344 0.28794 1.39481 1.40727 1.51115 1.92922 2.36268 2.42248 3.05623 3.15604 3.19974 3.30429 3.44495 3.72288 3.92056 3.95038 4.09598 4.13626 4.16398 4.27058 4.31498 4.47423 4.50574 4.55950 4.66823 4.68411 4.82741 4.84629 4.98531 4.98678 5.04314 5.07785 5.10218 5.21660 5.34890 5.45435 5.56674 5.72299 5.80716 5.87936 6.32796 6.46323 6.69010 6.92075 6.98380 7.48083 8.94065 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.002823 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.093976 B = 9917.596100 C =11001.782198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.225 3.775 4 H -0.032 1.032 5 C -0.513 4.513 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.683 5.683 14 C 0.049 3.951 15 C 0.159 3.841 16 H 0.112 0.888 17 O -0.556 6.556 18 C -0.067 4.067 19 C -0.141 4.141 20 C -0.032 4.032 21 C -0.667 4.667 22 S 2.509 3.491 23 C -0.621 4.621 24 O -0.979 6.979 25 O -0.977 6.977 26 C -0.030 4.030 27 C -0.140 4.140 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.260 0.740 34 H 0.334 0.666 35 H 0.057 0.943 36 H 0.024 0.976 37 H 0.384 0.616 38 H 0.142 0.858 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.160 0.840 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.015 19.035 -13.732 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.117 3.883 4 H -0.014 1.014 5 C -0.552 4.552 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.780 3.220 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.315 5.315 14 C -0.082 4.082 15 C 0.099 3.901 16 H 0.129 0.871 17 O -0.363 6.363 18 C -0.068 4.068 19 C -0.160 4.160 20 C -0.050 4.050 21 C -0.752 4.752 22 S 2.693 3.307 23 C -0.775 4.775 24 O -0.976 6.976 25 O -0.975 6.975 26 C -0.049 4.049 27 C -0.159 4.159 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.154 0.846 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.233 0.767 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.172 0.828 43 H 0.178 0.822 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.724 19.179 -13.523 25.036 hybrid contribution -0.077 -0.715 1.084 1.301 sum -8.801 18.464 -12.439 23.940 Atomic orbital electron populations 1.21747 0.96134 1.01296 1.00441 1.21611 0.94379 0.98930 1.01230 1.18923 0.94017 0.90717 0.84629 1.01415 1.21493 0.92895 1.36597 1.04198 0.93162 1.25683 1.02275 0.95327 0.95625 1.69996 1.36242 1.39913 1.09849 0.85615 0.80836 0.77436 0.78090 1.20545 1.20790 1.19427 1.60479 1.38751 1.02233 1.30062 1.22418 0.99959 0.90170 0.95625 1.20813 0.86937 0.87061 0.95276 0.87062 1.86618 1.16282 1.82195 1.51162 1.20977 0.94821 0.96460 0.94572 1.21406 0.98730 0.94493 1.01375 1.21164 0.96496 0.94974 0.92397 1.30742 1.01875 1.26597 1.16001 1.04792 0.73836 0.73548 0.78571 1.30011 1.15037 1.14125 1.18354 1.93538 1.34689 1.82559 1.86864 1.93534 1.64795 1.84519 1.54613 1.21171 0.97123 0.94057 0.92550 1.21298 0.98869 0.95382 1.00306 0.92309 0.92309 0.94484 0.94478 0.91411 0.93065 0.84645 0.92493 0.95796 0.76688 0.84038 0.82535 0.82874 0.82732 0.82771 0.82222 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.75 71.98 0.70 -4.43 16 2 C -0.12 -5.79 5.34 30.59 0.16 -5.62 16 3 C 0.23 11.27 2.02 44.17 0.09 11.36 16 4 H -0.03 -1.77 7.82 -2.38 -0.02 -1.78 16 5 C -0.51 -28.70 8.66 25.60 0.22 -28.48 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 7 C 0.01 0.51 5.29 84.66 0.45 0.95 16 8 N -0.92 -53.28 11.29 21.45 0.24 -53.04 16 9 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.68 -28.10 6.28 -495.45 -3.11 -31.21 16 14 C 0.05 1.72 5.09 86.30 0.44 2.16 16 15 C 0.16 4.35 3.45 29.85 0.10 4.45 16 16 H 0.11 3.23 8.00 -2.39 -0.02 3.21 16 17 O -0.56 -13.72 12.79 -148.98 -1.90 -15.63 16 18 C -0.07 -1.62 4.97 -19.87 -0.10 -1.72 16 19 C -0.14 -3.24 9.67 22.27 0.22 -3.02 16 20 C -0.03 -0.64 9.47 22.27 0.21 -0.43 16 21 C -0.67 -12.39 5.66 22.27 0.13 -12.27 16 22 S 2.51 37.61 5.80 -56.49 -0.33 37.28 16 23 C -0.62 -2.10 10.80 113.37 1.22 -0.88 16 24 O -0.98 -22.19 17.13 -127.65 -2.19 -24.37 16 25 O -0.98 -21.54 17.12 -127.65 -2.19 -23.72 16 26 C -0.03 -0.57 9.47 22.27 0.21 -0.36 16 27 C -0.14 -2.87 9.32 22.27 0.21 -2.66 16 28 H 0.06 1.90 6.47 -2.39 -0.02 1.88 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 32 H 0.07 3.65 5.94 -2.39 -0.01 3.63 16 33 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.33 12.43 6.16 -89.69 -0.55 11.88 16 35 H 0.06 2.32 8.02 -2.39 -0.02 2.31 16 36 H 0.02 0.82 8.13 -2.39 -0.02 0.80 16 37 H 0.38 6.76 7.50 -74.06 -0.56 6.20 16 38 H 0.14 2.95 8.04 -2.91 -0.02 2.92 16 39 H 0.16 2.54 7.57 -2.91 -0.02 2.52 16 40 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.16 2.28 7.56 -2.91 -0.02 2.26 16 44 H 0.15 2.31 6.79 -2.91 -0.02 2.29 16 Total: -1.00 -78.16 373.22 -3.27 -81.44 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.09 Total: 23.58 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 4.26 Total: -40.94 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.87 Total: -84.25 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -6.28 Total: -63.72 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 37.61 SS G_CDS: -0.33 Total: 37.28 kcal Total: -78.16 -3.27 -81.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.565 kcal (2) G-P(sol) polarization free energy of solvation -78.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds