Wall clock time and date at job start Tue Mar 31 2020 15:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47234 * 2 1 4 4 H 1.08995 * 109.47061 * 185.15847 * 3 2 1 5 5 C 1.50701 * 109.47081 * 305.15671 * 3 2 1 6 6 H 1.08003 * 119.99882 * 120.00015 * 5 3 2 7 7 C 1.37875 * 120.00225 * 300.00188 * 5 3 2 8 8 N 1.31514 * 119.99858 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00119 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46915 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46894 * 120.00049 * 9 7 5 12 12 H 1.48500 * 109.46956 * 239.99997 * 9 7 5 13 13 N 1.46896 * 109.47334 * 65.15864 * 3 2 1 14 14 C 1.46901 * 111.00481 * 85.89790 * 13 3 2 15 15 C 1.53001 * 109.47484 * 174.83280 * 14 13 3 16 16 H 1.08992 * 109.46971 * 60.00263 * 15 14 13 17 17 O 1.42904 * 109.46873 * 300.00207 * 15 14 13 18 18 C 1.50696 * 109.46779 * 180.02562 * 15 14 13 19 19 C 1.38239 * 120.00219 * 84.72558 * 18 15 14 20 20 C 1.38231 * 120.00122 * 179.80402 * 19 18 15 21 21 C 1.38240 * 119.99806 * 0.42301 * 20 19 18 22 22 S 1.76198 * 119.99742 * 179.78778 * 21 20 19 23 23 C 1.81401 * 104.45094 * 270.02278 * 22 21 20 24 24 O 1.42102 * 104.27998 * 26.09560 * 22 21 20 25 25 O 1.42105 * 104.27688 * 153.95121 * 22 21 20 26 26 C 1.38230 * 120.00060 * 359.81167 * 21 20 19 27 27 C 1.38233 * 120.00052 * 359.97438 * 26 21 20 28 28 H 1.09003 * 109.46767 * 294.85007 * 1 2 3 29 29 H 1.08993 * 109.47094 * 174.84754 * 1 2 3 30 30 H 1.09003 * 109.47004 * 54.84807 * 1 2 3 31 31 H 1.09002 * 109.46604 * 119.99579 * 2 1 3 32 32 H 1.08997 * 109.47220 * 239.99685 * 2 1 3 33 33 H 0.96995 * 120.00274 * 179.97438 * 8 7 5 34 34 H 1.00911 * 110.99985 * 321.94783 * 13 3 2 35 35 H 1.08998 * 109.46976 * 294.83834 * 14 13 3 36 36 H 1.09004 * 109.46501 * 54.83205 * 14 13 3 37 37 H 0.96704 * 113.99556 * 299.99695 * 17 15 14 38 38 H 1.08001 * 119.99656 * 359.97438 * 19 18 15 39 39 H 1.08004 * 120.00353 * 180.21081 * 20 19 18 40 40 H 1.09001 * 109.46989 * 60.00001 * 23 22 21 41 41 H 1.08998 * 109.47435 * 180.02562 * 23 22 21 42 42 H 1.09007 * 109.46869 * 299.99973 * 23 22 21 43 43 H 1.08001 * 120.00044 * 179.97438 * 26 21 20 44 44 H 1.08004 * 119.99990 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4438 -0.0924 5 6 1.4362 2.1888 -1.1616 6 1 0.8270 3.0628 -0.9840 7 6 1.6613 1.7559 -2.4512 8 7 2.4026 0.6914 -2.6674 9 14 0.9121 2.6806 -3.8910 10 1 0.1260 3.8337 -3.3836 11 1 1.9948 3.1731 -4.7802 12 1 0.0206 1.7704 -4.6539 13 7 1.6548 2.0981 1.2568 14 6 2.6432 1.8367 2.3116 15 6 2.2774 2.6373 3.5631 16 1 1.2884 2.3378 3.9098 17 8 2.2709 4.0319 3.2514 18 6 3.2918 2.3695 4.6449 19 6 4.4699 3.0919 4.6819 20 6 5.3985 2.8490 5.6766 21 6 5.1531 1.8778 6.6292 22 16 6.3393 1.5644 7.8938 23 6 7.4188 0.2849 7.1949 24 8 7.0426 2.7920 8.0267 25 8 5.5742 1.0383 8.9695 26 6 3.9773 1.1521 6.5893 27 6 3.0466 1.3980 5.5972 28 1 -0.3633 0.4319 0.9326 29 1 -0.3633 -1.0234 -0.0923 30 1 -0.3633 0.5917 -0.8403 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 2.5607 0.3866 -3.5746 34 1 0.7320 1.8104 1.5467 35 1 2.6482 0.7730 2.5493 36 1 3.6323 2.1362 1.9649 37 1 3.1208 4.3683 2.9358 38 1 4.6634 3.8478 3.9353 39 1 6.3175 3.4157 5.7076 40 1 7.8847 0.6605 6.2839 41 1 8.1916 0.0263 7.9187 42 1 6.8282 -0.6013 6.9622 43 1 3.7857 0.3930 7.3333 44 1 2.1281 0.8307 5.5658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846996258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:50 Heat of formation + Delta-G solvation = -93.409765 kcal Electronic energy + Delta-G solvation = -25502.100947 eV Core-core repulsion = 21739.826870 eV Total energy + Delta-G solvation = -3762.274077 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.94267 -37.42368 -37.40799 -36.25115 -35.93964 -32.72749 -31.94270 -31.26434 -30.61425 -29.89522 -27.70082 -25.84425 -23.54083 -23.18859 -22.96682 -21.27576 -19.41511 -19.36136 -18.25924 -17.00117 -16.52554 -16.48398 -16.28415 -15.58732 -15.23791 -14.88247 -14.75337 -14.50066 -14.03232 -13.80901 -13.75679 -13.59821 -13.46920 -13.28300 -12.95245 -12.62734 -12.49327 -12.39316 -12.29390 -11.93751 -11.77207 -11.54255 -11.46495 -11.13659 -10.99839 -10.90663 -10.81853 -10.56338 -10.18080 -9.99235 -9.79950 -9.64078 -9.32688 -9.28425 -8.97378 -8.39279 -7.27710 -6.02145 -4.03405 -0.28284 0.55102 1.06002 2.53670 3.13535 3.28801 3.37343 3.42881 3.62268 3.77826 4.31466 4.37080 4.39419 4.45938 4.52958 4.62755 4.64921 5.02847 5.10190 5.23098 5.27394 5.29958 5.31773 5.42768 5.56591 5.67563 5.79185 5.90680 5.95489 6.07205 6.27070 6.30462 6.34568 6.50136 6.56916 6.81390 7.18405 7.20168 7.45334 7.62671 7.76811 7.85070 8.21493 8.45886 8.55317 9.03295 9.60618 11.05005 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.024202 B = 0.002354 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.659905 B =11892.124559 C =11956.658592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.487 4.487 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.674 5.674 14 C 0.036 3.964 15 C 0.142 3.858 16 H 0.107 0.893 17 O -0.537 6.537 18 C -0.049 4.049 19 C -0.132 4.132 20 C -0.021 4.021 21 C -0.667 4.667 22 S 2.503 3.497 23 C -0.650 4.650 24 O -0.940 6.940 25 O -0.940 6.940 26 C -0.022 4.022 27 C -0.133 4.133 28 H 0.027 0.973 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.009 0.991 32 H 0.093 0.907 33 H 0.258 0.742 34 H 0.328 0.672 35 H 0.027 0.973 36 H 0.069 0.931 37 H 0.372 0.628 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.311 -2.099 18.685 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.525 4.525 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.304 5.304 14 C -0.095 4.095 15 C 0.082 3.918 16 H 0.124 0.876 17 O -0.342 6.342 18 C -0.051 4.051 19 C -0.151 4.151 20 C -0.039 4.039 21 C -0.754 4.754 22 S 2.683 3.317 23 C -0.800 4.800 24 O -0.937 6.937 25 O -0.938 6.938 26 C -0.041 4.041 27 C -0.152 4.152 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.146 0.854 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.220 0.780 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.075 -1.244 19.327 20.983 hybrid contribution -0.077 -1.017 -1.699 1.982 sum 7.998 -2.261 17.628 19.489 Atomic orbital electron populations 1.21601 0.97589 0.98735 1.00841 1.22118 0.95115 1.01135 1.00185 1.19231 0.95838 0.88562 0.85525 0.95158 1.21106 1.30408 1.11484 0.89551 0.91846 1.24920 0.95553 0.95177 0.98794 1.69885 1.39168 1.24039 1.20632 0.86510 0.78977 0.79910 0.82455 1.19683 1.21206 1.21235 1.60730 1.03407 1.63151 1.03147 1.22534 0.98291 0.96626 0.92038 1.21013 0.96795 0.83098 0.90877 0.87561 1.86646 1.38195 1.21822 1.87492 1.21172 0.95282 0.93343 0.95255 1.21077 0.93778 1.00775 0.99440 1.20896 0.99010 0.93057 0.90980 1.30428 1.15074 1.09758 1.20171 1.05032 0.75550 0.76192 0.74952 1.30227 1.16437 1.18961 1.14380 1.93585 1.74110 1.40669 1.85328 1.93582 1.69016 1.81129 1.50036 1.20902 0.91273 0.95898 0.96060 1.21155 1.00344 0.98716 0.94952 0.95403 0.95745 0.91135 0.97268 0.88865 0.93175 0.85403 0.95484 0.91220 0.78013 0.84843 0.84055 0.84868 0.85075 0.84917 0.84117 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.40 37.16 0.35 -2.33 16 2 C -0.15 -3.27 5.51 -26.73 -0.15 -3.42 16 3 C 0.22 5.09 2.33 -68.87 -0.16 4.93 16 4 H 0.03 0.79 7.70 -51.93 -0.40 0.39 16 5 C -0.49 -12.80 7.25 -34.44 -0.25 -13.05 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.06 1.49 5.28 -17.82 -0.09 1.40 16 8 N -0.90 -24.72 11.38 55.43 0.63 -24.09 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.67 -13.33 6.07 -107.95 -0.66 -13.99 16 14 C 0.04 0.57 5.15 -3.82 -0.02 0.55 16 15 C 0.14 1.90 3.46 -27.88 -0.10 1.80 16 16 H 0.11 1.38 8.05 -51.93 -0.42 0.96 16 17 O -0.54 -7.82 13.00 -35.23 -0.46 -8.28 16 18 C -0.05 -0.58 5.00 -104.62 -0.52 -1.10 16 19 C -0.13 -1.41 9.33 -39.58 -0.37 -1.77 16 20 C -0.02 -0.20 9.47 -39.58 -0.37 -0.58 16 21 C -0.67 -6.28 5.66 -39.58 -0.22 -6.50 16 22 S 2.50 19.66 5.80 -107.50 -0.62 19.04 16 23 C -0.65 -2.58 10.80 101.05 1.09 -1.49 16 24 O -0.94 -10.33 17.13 -57.54 -0.99 -11.32 16 25 O -0.94 -10.26 17.13 -57.54 -0.99 -11.25 16 26 C -0.02 -0.22 9.47 -39.59 -0.37 -0.59 16 27 C -0.13 -1.40 9.68 -39.58 -0.38 -1.78 16 28 H 0.03 0.50 6.63 -51.93 -0.34 0.16 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 1.60 6.85 -51.93 -0.36 1.25 16 31 H 0.01 0.18 7.50 -51.93 -0.39 -0.21 16 32 H 0.09 2.38 6.22 -51.93 -0.32 2.05 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.33 6.28 6.70 -39.29 -0.26 6.02 16 35 H 0.03 0.43 7.53 -51.93 -0.39 0.04 16 36 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 37 H 0.37 4.39 7.39 45.56 0.34 4.72 16 38 H 0.13 1.19 6.62 -52.49 -0.35 0.84 16 39 H 0.14 1.11 7.57 -52.48 -0.40 0.71 16 40 H 0.13 0.39 8.14 -51.92 -0.42 -0.04 16 41 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.13 0.38 8.14 -51.92 -0.42 -0.05 16 43 H 0.14 1.08 7.57 -52.49 -0.40 0.68 16 44 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -34.25 370.20 -9.86 -44.11 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.76 Total: 8.17 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -1.58 Total: -23.93 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.03 Total: -38.08 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -2.43 Total: -30.85 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 19.66 SS G_CDS: -0.62 Total: 19.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.25 -9.86 -44.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.298 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds